PreprintCited by 2DNA Repair MechanismsNuclear Structure and FunctionDNA and Nucleic Acid Chemistry

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

The interaction of XPG with TFIIH through p62 and XPD is required for the completion of nucleotide excision repair

Open access

Preprint — published as 10.1093/nar/gkag078 · Paper page

Abstract

Nucleotide excision repair (NER) is the key pathway for the removal of DNA damage induced by UV irradiation and chemotherapeutic reagents. Protein-protein interactions are crucial for the dynamic and coordinated assembly of the proteins involved at DNA lesion. Here we focus on the role of interactions between the multi-subunit helicase/translocase complex TFIIH and the 3’ endonuclease XPG. We show that XPG interacts with the p62 and XPD subunits of TFIIH through its long spacer region located in the middle of its split active site. We show the interactions between three acidic regions of XPG with the pleckstrin homology (PH) domain of p62 are of moderate importance for NER, while interactions with XPD are critical for activity. Combining mutations in the p62 and XPD interaction domains leads to additive defects in NER activity. Unexpectedly, we show that these interactions are not required for the recruitment of XPG, but rather for the formation of a catalytically competent NER complex and for triggering the incision 5’ to the lesion by ERCC1-XPF. Our studies provide fundamental insights into how interactions between TFIIH and XPG contribute to the NER pathway and more generally how modular protein-protein interactions control each step along the NER reaction coordinate.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2025.05.20.655039

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 70

  1. 10.1038/nrm3822 · DOI · Paper page
  2. 10.1101/cshperspect.a012609 · DOI
  3. 10.1016/S1097-2765(01)00281-7 · DOI
  4. 10.1016/S1097-2765(00)80132-X · DOI · Paper page
  5. 10.1038/s41556-021-00688-9 · DOI · Paper page
  6. 10.1038/s41467-020-15903-8 · DOI
  7. 10.1016/j.cell.2020.02.010 · DOI
  8. 10.1038/ng.2229 · DOI
  9. 10.1038/s41556-021-00692-z · DOI
  10. 10.1016/j.cell.2024.10.020 · DOI · Paper page
  11. 10.1016/j.molcel.2024.10.030 · DOI
  12. 10.1093/nar/gkae787 · DOI · Paper page
  13. 10.1016/j.cell.2024.10.018 · DOI
  14. 10.1093/emboj/16.21.6559 · DOI · Paper page
  15. 10.1093/emboj/cdg489 · DOI · Paper page
  16. 10.1073/pnas.1004339107 · DOI
  17. 10.1016/j.molcel.2008.04.024 · DOI
  18. 10.1038/emboj.2009.230 · DOI
  19. Kuper, J. , Hove, T. , Maidl, S. , Neitz, H. , Sauer, F. , Kempf, M. , Schroeder, T. , Greiter, E. , Höbartner, C. and Kisker, C . (2024) XPD stalled on cross-linked DNA provides insight into damage verification. Nat Struct Mol Biol, 1–9. · DOI
  20. 10.1073/pnas.95.12.6669 · DOI
  21. 10.1101/gad.14.3.349 · DOI
  22. 10.1038/emboj.2009.49 · DOI · Paper page
  23. 10.1038/sj.emboj.7601948 · DOI
  24. 10.1016/j.molcel.2010.02.009 · DOI · Paper page
  25. 10.1016/j.dnarep.2024.103728 · DOI
  26. 10.1038/s41586-023-05959-z · DOI
  27. 10.1074/jbc.275.13.9870 · DOI
  28. 10.1093/nar/gkx970 · DOI
  29. 10.1074/jbc.270.9.4896 · DOI
  30. 10.1038/s41467-019-10745-5 · DOI · Paper page
  31. 10.1093/nar/gkz1231 · DOI
  32. 10.1016/S0092-8674(00)00136-7 · DOI
  33. 10.1073/pnas.2207408119 · DOI
  34. 10.1074/jbc.M109.067538 · DOI · Paper page
  35. 10.1038/sj.emboj.7601894 · DOI
  36. 10.1093/nar/gkm503 · DOI
  37. 10.1128/MCB.21.7.2281-2291.2001 · DOI
  38. 10.1128/MCB.23.16.5755-5767.2003 · DOI · Paper page
  39. 10.1093/nar/gkac1095 · DOI
  40. 10.1038/363182a0 · DOI
  41. 10.1128/MCB.24.24.10670-10680.2004 · DOI
  42. 10.1074/jbc.M412228200 · DOI
  43. 10.1038/nsmb782 · DOI
  44. 10.1093/nar/gks1321 · DOI
  45. 10.1093/nar/gkae286 · DOI
  46. 10.1093/nar/gks194 · DOI
  47. 10.1016/j.str.2015.07.009 · DOI
  48. 10.1074/jbc.M213155200 · DOI
  49. Salmon, P. and Trono, D . (2006) Production and titration of lentiviral vectors. Curr Protoc Neurosci, Chapter 4, Unit 4 21. · DOI
  50. 10.1038/s41467-024-45664-7 · DOI
  51. 10.1093/nar/gkz629 · DOI
  52. 10.1016/bs.mie.2017.03.008 · DOI
  53. 10.1021/ja9013634 · DOI
  54. 10.1093/emboj/21.8.2045 · DOI
  55. 10.1038/s41467-024-52860-y · DOI
  56. 10.1093/nar/gkad472 · DOI
  57. 10.1074/jbc.M412228200 · DOI
  58. 10.1073/pnas.1921311117 · DOI
  59. 10.1074/jbc.M111.337899 · DOI
  60. 10.1073/pnas.2207408119 · DOI
  61. 10.1074/jbc.272.25.16030 · DOI
  62. 10.1074/jbc.274.9.5637 · DOI · Paper page
  63. 10.1093/nar/gkz1077 · DOI
  64. 10.1093/carcin/bgm157 · DOI · Paper page
  65. 10.1242/jcs.03391 · DOI · Paper page
  66. 10.1073/pnas.95.12.6669 · DOI
  67. 10.1038/s41467-019-10745-5 · DOI · Paper page
  68. 10.1016/j.cell.2011.03.004 · DOI
  69. 10.1128/MCB.00695-06 · DOI
  70. 10.1074/jbc.R400015200 · DOI

Metadata

Authors
Kim, M., Jeong, E., Park, J., Tsai, M.-S., Yan, C., Ivanov, I., Kim, H. S., & Schärer, O. D.
Affiliations
  • Ulsan National Institute of Science and Technology (KR)
  • Lawrence Berkeley National Laboratory (US)
  • Georgia State University (US)
  • University of Pittsburgh (US)
Corresponding author
  • Kim, Hyun Suk
  • Schärer, Orlando D
Venue
Nucleic Acids Research
Publisher
openRxiv
Published
2025-05-23
Volume
54
Issue
4
ISSN
0305-1048 (ISSN-L)
OpenAlex
W7128094628
Cited by
2
References
1
Citations by year
2026: 2
FWCI
4.10
Type
journal article
Language
en
Open access
Locations
  • Nucleic Acids Research (publishedVersion, cc-by-nc)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed Central (submittedVersion)
Funders
  • National Cancer Institute (P01CA092584)
  • National Research Foundation of Korea (RS-2023-00274772)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
Keywords
nucleotide excision repair, XPG, TFIIH, p62, XPD, protein-protein interaction, pleckstrin homology domain, DNA damage, UV-induced DNA damage

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review