PreprintCited by 58Cell Adhesion Molecules ResearchBiotin and Related StudiesAdvanced Proteomics Techniques and Applications

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The N-cadherin interactome in primary cardiomyocytes as defined by quantitative proximity proteomics

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Preprint — published as 10.1242/jcs.221606 · Paper page

Abstract

The junctional complexes that couple cardiomyocytes must transmit the mechanical forces of contraction while maintaining adhesive homeostasis. The adherens junction (AJ) connects the actomyosin networks of neighboring cardiomyocytes and is required for proper heart function. Yet little is known about the molecular composition of the cardiomyocyte AJ or how it is organized to function under mechanical load. Here we define the architecture, dynamics and proteome of the cardiomyocyte AJ. Mouse neonatal cardiomyocytes assemble stable AJs along intercellular contacts with organizational and structural hallmarks similar to mature contacts. We combine quantitative mass spectrometry with proximity labeling to identify the N-cadherin (CDH2) interactome. We define over 350 proteins in this interactome, nearly 200 of which are unique to CDH2 and not part of the E-cadherin (CDH1) interactome. CDH2-specific interactors are comprised primarily of adaptor and adhesion proteins that promote junction specialization. Finally, we find evidence of dynamic interplay between AJ and Z-disc proteins. Together, our results provide novel insight into the cardiomyocyte AJ and provide a proteomic atlas for defining the molecular complexes that regulate cardiomyocyte intercellular adhesion. Summary Statement: Proximity proteomics reveals a specific and specialized N-cadherin (CDH2) interactome along the cell-cell contacts of primary cardiomyocytes.

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Cites

  • Global quantification of mammalian gene expression control

    Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., & Selbach, M. (2011) · Nature · doi:10.1038/nature10098 · Cited by 6,566 · cited 1×

    “As a surrogate for protein abundance, MaxQuant iBAQ values were used for label-free absolute quantification of identified proteins (Schwanhausser et al., 2011).”
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Research works printed but not linked: 83

  1. 10.1161/01.RES.80.1.88 · DOI
  2. 2016, The alternatively-included 11a sequence modifies the effects of Mena on actin cytoskeletal organization and cell behavior, Sci Rep, 6, 35298, 10.1038/srep35298 · DOI
  3. 10.1016/j.ceb.2015.03.005 · DOI
  4. 10.1016/j.ceb.2009.07.002 · DOI
  5. 10.1091/mbc.E05-12-1109 · DOI
  6. 10.1016/j.ejcb.2006.02.009 · DOI
  7. 10.1074/jbc.M116.766824 · DOI
  8. 10.1093/hmg/6.13.2257 · DOI
  9. 10.1016/j.cub.2018.02.003 · DOI
  10. 10.1074/jbc.M109.047928 · DOI
  11. 10.1038/nbt.1511 · DOI · Paper page
  12. 10.1016/j.cell.2005.09.021 · DOI
  13. 10.1016/j.bbamcr.2015.11.006 · DOI
  14. Ehler, E. (2018). Actin-associated proteins and cardiomyopathy-the ‘unknown’ beyond troponin and tropomyosin. Biophys Rev. · DOI
  15. Ehler, E. , Moore-Morris, T. and Lange, S. (2013). Isolation and culture of neonatal mouse cardiomyocytes. J Vis Exp. · DOI
  16. 10.1007/s12551-008-0007-y · DOI
  17. 10.1074/mcp.M113.035600 · DOI · Paper page
  18. 10.1083/jcb.146.2.465 · DOI
  19. 10.1074/jbc.R110.174268 · DOI
  20. 10.1007/s00109-005-0033-1 · DOI · Paper page
  21. 10.1016/j.ejcb.2005.11.003 · DOI
  22. 10.1016/j.ejcb.2006.11.003 · DOI
  23. 10.1083/jcb.200705002 · DOI
  24. Garcia, M. A. , Nelson, W. J. and Chavez, N. (2018). Cell-Cell Junctions Organize Structural and Signaling Networks. Cold Spring Harb Perspect Biol 10. · DOI
  25. 10.1172/JCI27751 · DOI · Paper page
  26. 1992, The involvement of adherens junction components in myofibrillogenesis in cultured cardiac myocytes, Development, 114, 173, 10.1242/dev.114.1.173 · DOI
  27. 10.1242/jcs.004713 · DOI
  28. 10.1126/scisignal.2005473 · DOI
  29. 10.1101/gad.1486806 · DOI
  30. 10.1074/jbc.272.51.32448 · DOI
  31. 10.1073/pnas.95.5.2509 · DOI
  32. Herzog, W. (2018). The multiple roles of titin in muscle contraction and force production. Biophys Rev. · DOI
  33. 10.1016/j.ydbio.2005.10.046 · DOI
  34. 10.1161/CIRCRESAHA.110.225649 · DOI
  35. 10.1016/j.tcb.2015.09.008 · DOI · Paper page
  36. 10.1186/1471-2164-9-488 · DOI
  37. 2015, Costamere proteins and their involvement in myopathic processes, Expert Rev Mol Med, 17, e12, 10.1017/erm.2015.9 · DOI
  38. 10.1073/pnas.0905349106 · DOI
  39. 10.1091/mbc.E15-12-0844 · DOI
  40. 10.1161/01.RES.0000156274.72390.2c · DOI
  41. 10.1002/cpcb.11 · DOI
  42. 10.1038/s41598-017-04520-z · DOI · Paper page
  43. 10.1074/jbc.M111.299669 · DOI
  44. 10.1242/jcs.098640 · DOI
  45. 10.1161/01.RES.0000181132.11393.18 · DOI · Paper page
  46. 10.1038/srep09758 · DOI
  47. 10.1038/nprot.2007.135 · DOI
  48. 10.1002/cm.970320305 · DOI
  49. 10.1016/j.bpj.2012.02.029 · DOI
  50. 10.1074/jbc.M707461200 · DOI
  51. 10.1016/j.tcb.2013.06.004 · DOI
  52. 10.1242/jcs.00422 · DOI
  53. 10.1016/j.ceb.2015.06.008 · DOI
  54. 10.1091/mbc.E05-06-0488 · DOI
  55. 10.1016/j.ejcb.2007.04.001 · DOI
  56. 10.1074/jbc.M114.554709 · DOI
  57. 10.1074/jbc.M201463200 · DOI
  58. 10.1038/nrm3431 · DOI
  59. 10.1073/pnas.92.19.8813 · DOI · Paper page
  60. 10.1152/ajpheart.00749.2005 · DOI
  61. 10.1083/jcb.200904001 · DOI
  62. 10.1161/CIRCULATIONAHA.106.634469 · DOI
  63. 10.1016/j.biocel.2017.03.009 · DOI
  64. 10.1016/S0076-6879(98)98045-4 · DOI
  65. 10.1083/jcb.150.5.1161 · DOI
  66. 2016, Mapping Human Pluripotent-to-Cardiomyocyte Differentiation: Methylomes, Transcriptomes, and Exon DNA Methylation “Memories”, EBioMedicine, 4, 74, 10.1016/j.ebiom.2016.01.021 · DOI
  67. 10.1038/nprot.2016.136 · DOI
  68. 10.1371/journal.pone.0122886 · DOI
  69. 10.1093/nar/gkq1020 · DOI
  70. 10.1093/eurheartj/ehs373 · DOI
  71. 10.1242/jcs.140475 · DOI
  72. 2014, Structural and energetic determinants of adhesive binding specificity in type I cadherins, Proc Natl Acad Sci U S A, 111, 4175, 10.1073/pnas.1416737111 · DOI
  73. 2017, Refining the molecular organization of the cardiac intercalated disc, Cardiovasc Res, 113, 259
  74. 10.1007/s00441-015-2123-x · DOI
  75. 10.3109/15419061.2014.908853 · DOI
  76. 10.1083/jcb.200012039 · DOI
  77. 10.1083/jcb.141.3.755 · DOI
  78. 10.1074/jbc.M116.735423 · DOI
  79. 1999, Domain analysis of supervillin, an F-actin bundling plasma membrane protein with functional nuclear localization signals, J Cell Sci, 112, 2125
  80. 10.1016/j.cell.2005.09.020 · DOI
  81. 10.1038/ncb2055 · DOI · Paper page
  82. 10.1093/jmcb/mjp038 · DOI · Paper page
  83. 10.1083/jcb.201009068 · DOI

Metadata

Authors
Li, Y., Merkel, C. D., Zeng, X., Heier, J. A., Cantrell, P. S., Sun, M., Stolz, D. B., Watkins, S. C., Yates, N. A., & Kwiatkowski, A. V.
Affiliations
University of Pittsburgh (US)
Corresponding author
Kwiatkowski, Adam V.
Venue
Journal of Cell Science
Publisher
openRxiv
Published
2018-06-15
Volume
132
Issue
3
ISSN
0021-9533 (ISSN-L)
OpenAlex
W2808271009
Cited by
58
References
1
Citations by year
2026: 10 · 2025: 3 · 2024: 4 · 2023: 6 · 2022: 10 · 2021: 8 · 2020: 12 · 2019: 4 · 2018: 1
FWCI
6.47
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • Journal of Cell Science (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • Europe PMC (PubMed Central) (publishedVersion, other-oa)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • HighWire Press Open Archive (submittedVersion)
Funders
  • National Institutes of Health (1s10od011967-01a1)
  • National Heart, Lung, and Blood Institute (F31HL136069, R01HL127711)
  • National Cancer Institute (P30CA047904)
Topics
  • Health Sciences › Medicine › Immunology and Allergy › Cell Adhesion Molecules Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Biotin and Related Studies
  • Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
Keywords
N-cadherin, E-cadherin, CDH1, adherens junctions, cardiomyocytes, protein-protein interaction network, cell-cell adhesion, junctional complexes, mechanical force transmission, proximity labeling, neonatal cardiomyocytes
MeSH terms
Actomyosin, Animals, Animals, Newborn, Cell Adhesion, Cell Communication, Gene Expression Regulation, Actin Cytoskeleton, Protein Binding, Cadherins, Adherens Junctions, Protein Interaction Mapping, Myocytes, Cardiac, Mechanotransduction, Cellular, Proteomics, Mice, Molecular Sequence Annotation, Primary Cell Culture, Gene Ontology

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