PreprintCited by 32Functional Brain Connectivity StudiesAcute Ischemic Stroke ManagementStroke Rehabilitation and Recovery

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Brain connectivity measures improve modeling of functional outcome after acute ischemic stroke

Open access

Preprint — published as 10.1161/strokeaha.119.025738 · Paper page

Abstract

Background: The ability to model long-term functional outcomes after acute ischemic stroke (AIS) represents a major clinical challenge. One approach to potentially improve prediction modeling involves the analysis of connectomics. The field of connectomics represents the brain’s connectivity as a graph, whose topological properties have helped uncover underlying mechanisms of brain function in health and disease. Specifically, we assessed the impact of stroke lesions on rich club (RC) organization, a high capacity backbone system of brain function. Methods: In a hospital-based cohort of 41 AIS patients, we investigated the effect of acute infarcts on the brain’s pre-stroke RC backbone and post-stroke functional connectomes with respect to post-stroke outcome. Functional connectomes were created utilizing three anatomical atlases and characteristic path-length ( L ) was calculated for each connectome. The number of RC regions (N RC ) affected were manually determined using each patient’s diffusion weighted image (DWI). We investigated differences in L with respect to outcome (modified Rankin Scale score (mRS); 90-days; poor: mRS>2) and the National Institutes of Health Stroke Scale (NIHSS; early: 2-5 days; late: 90-day follow-up). Furthermore, we assessed the effect of including N RC and L in ‘outcome’ models, using linear regression and assessing the explained variance (R 2 ). Results: Of 41 patients (mean age (range): 70 (45-89) years), 61% were male. There were differences in L between patients with good and poor outcome (mRS). Including NRC in the backward selection models of outcome, R 2 increased between 1.3- and 2.6-fold beyond that of traditional markers (age and acute lesion volume) for NIHSS and mRS. Conclusion: In this proof-of-concept study, we showed that information on network topology can be leveraged to improve modeling of post-stroke functional outcome. Future studies are warranted to validate this approach in larger prospective studies of outcome prediction in stroke.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/590497

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 59

  1. Di Carlo A. Human and economic burden of stroke. Oxford University Press; 2009.
  2. 10.1159/000047699 · DOI
  3. 10.1161/hs1001.096588 · DOI
  4. 10.1161/01.STR.0000035261.28528.C8 · DOI
  5. 10.1161/01.STR.0000018684.86293.AB · DOI
  6. 10.1016/j.neuroimage.2009.10.003 · DOI · Paper page
  7. 10.1523/JNEUROSCI.3539-11.2011 · DOI · Paper page
  8. 2016, Characterising brain network topologies: a dynamic analysis approach using heat kernels, Neuroimage, 141, 490, 10.1016/j.neuroimage.2016.07.006 · DOI
  9. Schirmer MD , Chung AW. Structural subnetwork evolution across the life-span: rich-club, feeder, seeder. In: International Workshop on Connectomics in Neuroimaging. Springer; 2018. p. 136–145. · DOI
  10. Schirmer MD , Chung AW , Grant PE , Rost NS. Network Structural Dependency in the Human Connectome Across the Life-Span. Netw. Neurosci. [Internet]. 2018;(in print). Available from: https://arxiv.org/abs/1810.09935 · arXiv
  11. Ktena SI , Arslan S , Parisot S , Rueckert D. Exploring heritability of functional brain networks with inexact graph matching. In: Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on. IEEE; 2017. p. 354–357. · DOI
  12. 10.1523/JNEUROSCI.3874-05.2006 · DOI · Paper page
  13. 10.1371/journal.pcbi.1002885 · DOI
  14. 10.1073/pnas.1502052112 · DOI
  15. 10.1038/nrn3901 · DOI · Paper page
  16. 2017, BrainNetCNN: convolutional neural networks for brain networks; towards predicting neurodevelopment, NeuroImage, 146, 1038, 10.1016/j.neuroimage.2016.09.046 · DOI · Paper page
  17. 2018, Metric learning with spectral graph convolutions on brain connectivity networks, NeuroImage, 169, 431, 10.1016/j.neuroimage.2017.12.052 · DOI
  18. 10.1016/j.neuron.2011.12.040 · DOI · Paper page
  19. 10.1038/nrn3963 · DOI · Paper page
  20. Etherton MR , Wu O , Cougo P , Giese A-K , Cloonan L , Fitzpatrick KM , et al. Integrity of normal-appearing white matter and functional outcomes after acute ischemic stroke. Neurology. 2017;10–1212. · DOI
  21. 2013, Abnormal rich club organization and functional brain dynamics in schizophrenia, JAMA Psychiatry, 70, 783, 10.1001/jamapsychiatry.2013.1328 · DOI
  22. 2010, Cortical hubs form a module for multisensory integration on top of the hierarchy of cortical networks, Front. Neuroinformatics, 4, 1
  23. 10.1073/pnas.1203593109 · DOI · Paper page
  24. 10.1073/pnas.1220826110 · DOI
  25. 10.1093/brain/awu132 · DOI · Paper page
  26. 10.1161/STROKEAHA.115.011242 · DOI
  27. 10.1161/STROKEAHA.115.009643 · DOI
  28. 10.1111/ene.12743 · DOI · Paper page
  29. 10.1161/STROKEAHA.111.646570 · DOI
  30. 2013, Predicting outcome and recovery after stroke with lesions extracted from MRI images, NeuroImage Clin, 2, 424, 10.1016/j.nicl.2013.03.005 · DOI · Paper page
  31. 10.1073/pnas.1214900110 · DOI · Paper page
  32. 10.1093/brain/aww194 · DOI
  33. Park C , Chang WH , Ohn SH , Kim ST , Bang OY , Pascual-Leone A , et al. Longitudinal changes of resting-state functional connectivity during motor recovery after stroke. Stroke. 2011; STROKEAHA–110. · DOI
  34. 10.1177/1545968312457827 · DOI
  35. 10.1002/ana.21905 · DOI
  36. 10.1113/jphysiol.2012.243469 · DOI
  37. 10.2214/ajr.149.2.351 · DOI
  38. 10.1212/WNL.50.4.864 · DOI
  39. 10.1159/000313438 · DOI
  40. 10.1177/003693305700200504 · DOI
  41. 10.1161/01.STR.0000157596.13234.95 · DOI
  42. 10.1161/01.STR.0000258355.23810.c6 · DOI · Paper page
  43. 10.1161/STROKEAHA.109.557256 · DOI
  44. 10.1109/TMI.2010.2046908 · DOI
  45. Schirmer MD , Dalca AV , Sridharan R , Giese A-K , Donahue KL , Nardin MJ , et al. White Matter Hyperintensity Quantification in Large-Scale Clinical Acute Ischemic Stroke Cohorts - The MRI-GENIE Study. bioRxiv. 2019;552844. · DOI
  46. 10.1016/j.neuroimage.2010.09.025 · DOI · Paper page
  47. 10.1016/j.neuroimage.2008.10.055 · DOI · Paper page
  48. 10.1002/hbm.10062 · DOI · Paper page
  49. 10.1016/j.neuroimage.2006.01.021 · DOI · Paper page
  50. 10.1093/cercor/bhg087 · DOI
  51. 10.1006/nimg.2001.0978 · DOI · Paper page
  52. 2013, Machine learning with brain graphs: predictive modeling approaches for functional imaging in systems neuroscience, IEEE Signal Process. Mag, 30, 58, 10.1109/MSP.2012.2233865 · DOI
  53. 10.1093/brain/awq043 · DOI
  54. Cheng L , Wu Z , Fu Y , Miao F , Sun J , Tong S. Reorganization of functional brain networks during the recovery of stroke: a functional MRI study. In: Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE. IEEE; 2012. p. 4132–4135.
  55. 10.1038/35019019 · DOI · Paper page
  56. 10.1177/0271678X17709198 · DOI
  57. 10.1177/0271678X15614846 · DOI
  58. 10.1159/000106983 · DOI
  59. 10.1148/radiol.2342031323 · DOI

Metadata

Authors
Ktena, S. I., Schirmer, M. D., Etherton, M. R., Giese, A.-K., Tuozzo, C., Mills, B. B., Rueckert, D., Wu, O., & Rost, N. S.
Affiliations
  • Harvard University (US)
  • Imperial College London (GB)
  • Massachusetts General Hospital (US)
Corresponding author
Schirmer, Markus D.
Venue
Stroke
Publisher
openRxiv
Published
2019-03-28
Volume
50
Issue
10
Pages
2761-2767
ISSN
0039-2499 (ISSN-L)
OpenAlex
W2972711230
Cited by
32
References
1
Citations by year
2026: 3 · 2025: 3 · 2024: 4 · 2023: 3 · 2022: 7 · 2021: 7 · 2020: 1 · 2019: 4
FWCI
2.76
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • Stroke (publishedVersion)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
  • DZNE Pub (submittedVersion)
  • Zenodo (CERN European Organization for Nuclear Research) (submittedVersion, cc-by)
Funders
National Institute of Neurological Disorders and Stroke (R01NS086905, R01NS082285)
Topics
  • Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
  • Health Sciences › Medicine › Clinical Neurology › Acute Ischemic Stroke Management
  • Health Sciences › Medicine › Rehabilitation › Stroke Rehabilitation and Recovery
Keywords
acute ischemic stroke, functional outcome prediction, connectomics, rich club, functional connectome, network topology, average path length, stroke lesion location, modified Rankin Scale, NIHSS, diffusion-weighted imaging
MeSH terms
Aged, Aged, 80 and over, Brain Ischemia, Female, Humans, Magnetic Resonance Imaging, Male, Middle Aged, Models, Neurological, Neural Pathways, Recovery of Function, Stroke, Connectome

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review