The DOI matches its Crossref record; 160 of the 163 references it cites were found in a registry or an index.
Spliceosome Structure and Function
Open accessAbstract
Pre-mRNA splicing is catalyzed by the spliceosome, a multimegadalton ribonucleoprotein (RNP) complex comprised of five snRNPs and numerous proteins. Intricate RNA-RNA and RNP networks, which serve to align the reactive groups of the pre-mRNA for catalysis, are formed and repeatedly rearranged during spliceosome assembly and catalysis. Both the conformation and composition of the spliceosome are highly dynamic, affording the splicing machinery its accuracy and flexibility, and these remarkable dynamics are largely conserved between yeast and metazoans. Because of its dynamic and complex nature, obtaining structural information about the spliceosome represents a major challenge. Electron microscopy has revealed the general morphology of several spliceosomal complexes and their snRNP subunits, and also the spatial arrangement of some of their components. X-ray and NMR studies have provided high resolution structure information about spliceosomal proteins alone or complexed with one or more binding partners. The extensive interplay of RNA and proteins in aligning the pre-mRNA's reactive groups, and the presence of both RNA and protein at the core of the splicing machinery, suggest that the spliceosome is an RNP enzyme. However, elucidation of the precise nature of the spliceosome's active site, awaits the generation of a high-resolution structure of its RNP core.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Alternative splicing patterns (BOX 1) are regulated by specialized pre-mRNA binding proteins that alter spliceosome assembly at specific splice sites5–8”
From The neurogenetics of alternative splicing (2016) · cites this paper as [5]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Lysine acetylation targets protein complexes and co-regulates major cellular functions
Choudhary, C., Kumar, C., Gnad, F., Nielsen, M. L., Rehman, M., Walther, T. C., Olsen, J. V., & Mann, M. (2009) · Science · doi:10.1126/science.1175371 · Cited by 4,040
Mechanisms of Alternative Pre-Messenger RNA Splicing
Black, D. L. (2003) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.72.121801.161720 · Cited by 2,704
The Spliceosome: Design Principles of a Dynamic RNP Machine
Wahl, M. C., Will, C. L., & Lührmann, R. (2009) · Cell · doi:10.1016/j.cell.2009.02.009 · Cited by 2,665
Self-citationExpansion of the eukaryotic proteome by alternative splicing
Nilsen, T. W., & Graveley, B. R. (2010) · Nature · doi:10.1038/nature08909 · Cited by 2,254
Understanding alternative splicing: towards a cellular code
Matlin, A. J., Clark, F., & Smith, C. W. J. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1645 · Cited by 1,299
Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches
Chen, M., & Manley, J. L. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2777 · Cited by 1,284
An extensive network of coupling among gene expression machines
Maniatis, T., & Reed, R. (2002) · Nature · doi:10.1038/416499a · Cited by 1,148
Mechanical Devices of the Spliceosome: Motors, Clocks, Springs, and Things
Staley, J. P., & Guthrie, C. (1998) · Cell · doi:10.1016/s0092-8674(00)80925-3 · Cited by 1,133
Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
Wang, Z., & Burge, C. B. (2008) · RNA · doi:10.1261/rna.876308 · Cited by 1,127
Exon Recognition in Vertebrate Splicing
Berget, S. M. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.6.2411 · Cited by 1,090
Jurica, M. S., & Moore, M. J. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00270-3 · Cited by 963
Alternative pre-mRNA splicing: the logic of combinatorial control
Smith, C. W. J., & Valcárcel, J. (2000) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(00)01604-2 · Cited by 901
Oubridge, C., Ito, N., Evans, P. R., Teo, C.-H., & Nagai, K. (1994) · Nature · doi:10.1038/372432a0 · Cited by 832
GraFix: sample preparation for single-particle electron cryomicroscopy
Kastner, B., Fischer, N., Golas, M. M., Sander, B. O., Dube, P., Boehringer, D., Hartmuth, K., Deckert, J., Hauer, F., Wolf, E., et al. (2007) · Nature Methods · doi:10.1038/nmeth1139 · Cited by 578
How did alternative splicing evolve?
Ast, G. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1451 · Cited by 544
20 Splicing of Precursors to mRNAs by the Spliceosomes
Burge, C. B., Tuschl, T., & Sharp, P. A. (1999) · doi:10.1101/087969589.37.525 · Cited by 538
Crystal Structure of a Self-Spliced Group II Intron
Toor, N., Keating, K. S., Taylor, S. D., & Pyle, A. M. (2008) · Science · doi:10.1126/science.1153803 · Cited by 498
Splicing double: insights from the second spliceosome
Patel, A. A., & STEITZ, J. A. (2003) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1259 · Cited by 479
Madhani, H. D., & Guthrie, C. (1992) · Cell · doi:10.1016/0092-8674(92)90556-r · Cited by 438
Jmjd6 Catalyses Lysyl-Hydroxylation of U2AF65, a Protein Associated with RNA Splicing
Webby, C. J., Wolf, A., Gromak, N., Dreger, M., Kramer, H., Kessler, B. M., Nielsen, M. L., Schmitz, C., Butler, D. S., Yates, J. R., et al. (2009) · Science · doi:10.1126/science.1175865 · Cited by 423
Intron—exon structures of eukaryotic model organisms
Long, M., & Deutsch, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.15.3219 · Cited by 417
Ward, A. J., & Cooper, T. A. (2009) · The Journal of Pathology · doi:10.1002/path.2649 · Cited by 415
Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays
Clark, T. A., Sugnet, C. W., & Ares, M. (2002) · Science · doi:10.1126/science.1069415 · Cited by 411
Xiao, S.-H., & Manley, J. L. (1997) · Genes & Development · doi:10.1101/gad.11.3.334 · Cited by 397
Isolation of an active step I spliceosome and composition of its RNP core
Bessonov, S., Anokhina, M. M., Will, C. L., Urlaub, H., & Lührmann, R. (2008) · Nature · doi:10.1038/nature06842 · Cited by 396
Self-citationKambach, C., Walke, S., Young, R., Avis, J. M., de la Fortelle, E., Raker, V. A., Lührmann, R., Li, J., & Nagai, K. (1999) · Cell · doi:10.1016/s0092-8674(00)80550-4 · Cited by 387
Prp8 protein: At the heart of the spliceosome
Grainger, R. J. R., & Beggs, J. D. (2005) · RNA · doi:10.1261/rna.2220705 · Cited by 374
Allosteric Cascade of Spliceosome Activation
Brow, D. A. (2002) · Annual Review of Genetics · doi:10.1146/annurev.genet.36.043002.091635 · Cited by 372
Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolution
Krummel, D. P., Oubridge, C., Leung, A. K.-W., Li, J., & Nagai, K. (2009) · Nature · doi:10.1038/nature07851 · Cited by 358
Price, S. R., Evans, P. R., & Nagai, K. (1998) · Nature · doi:10.1038/29234 · Cited by 356
An RNA Switch at the 5′ Splice Site Requires ATP and the DEAD Box Protein Prp28p
Staley, J. P., & Guthrie, C. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80174-4 · Cited by 339
The Prp19p-Associated Complex in Spliceosome Activation
Chan, S., Kao, D.-I., Tsai, W.-Y., & Cheng, S.-C. (2003) · Science · doi:10.1126/science.1086602 · Cited by 323
The Evolutionarily Conserved Core Design of the Catalytic Activation Step of the Yeast Spliceosome
Fabrizio, P., Dannenberg, J., Dube, P., Kastner, B., Stark, H., Urlaub, H., & Lührmann, R. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.09.040 · Cited by 313
13 Splicing of Precursors to mRNA by the SpliceosomePreprint
Moore, M. J., Query, C. C., & Sharp, P. A. (1993) · Cold Spring Harbor Monograph Archive · doi:10.1101/087969380.24.303 · Cited by 309
Deckert, J., Hartmuth, K., Boehringer, D., Behzadnia, N., Will, C. L., Kastner, B., Stark, H., Urlaub, H., & Lührmann, R. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.00582-06 · Cited by 301
Self-citationCrystal Structure of the Spliceosomal 15.5kD Protein Bound to a U4 snRNA Fragment
Vidovic, I., Nottrott, S., Hartmuth, K., Lührmann, R., & Ficner, R. (2000) · Molecular Cell · doi:10.1016/s1097-2765(00)00131-3 · Cited by 298
Identification of alternative splicing regulators by RNA interference in Drosophila
Park, J. W., Parisky, K. M., Celotto, A. M., Reenan, R. A., & Graveley, B. R. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407004101 · Cited by 290
Valcárcel, J., Gaur, R. K., Singh, R., & Green, M. R. (1996) · Science · doi:10.1126/science.273.5282.1706 · Cited by 288
Molecular Architecture of the Multiprotein Splicing Factor SF3b
Golas, M. M., Sander, B. O., Will, C. L., Lührmann, R., & Stark, H. (2003) · Science · doi:10.1126/science.1084155 · Cited by 277
Self-citationComposition and Functional Characterization of the Yeast Spliceosomal Penta-snRNP
Stevens, S. W., Ryan, D. E., Ge, H. Y., Moore, R. E., Young, M. K., Lee, T. D., & Abelson, J. N. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00436-7 · Cited by 273
The architecture of pre-mRNAs affects mechanisms of splice-site pairing
Fox-Walsh, K. L., Dou, Y., Lam, B. J., Hung, S., Baldi, P., & Hertel, K. J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508489102 · Cited by 267
Mechanisms of fidelity in pre-mRNA splicing
Reed, R. (2000) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(00)00097-1 · Cited by 253
Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle
Stark, H., Dube, P., Lührmann, R., & Kastner, B. (2001) · Nature · doi:10.1038/35054102 · Cited by 253
Structural Basis for Recognition of the Intron Branch Site RNA by Splicing Factor 1
Liu, Z., Luyten, I., Bottomley, M. J., Messias, A. C., Houngninou-Molango, S., Sprangers, R., Zanier, K., Krämer, A., & Sattler, M. (2001) · Science · doi:10.1126/science.1064719 · Cited by 244
Splicing-related catalysis by protein-free snRNAs
Valadkhan, S., & Manley, J. L. (2001) · Nature · doi:10.1038/35099500 · Cited by 222
Behzadnia, N., Golas, M. M., Hartmuth, K., Sander, B. O., Kastner, B., Deckert, J., Dube, P., Will, C. L., Urlaub, H., Stark, H., et al. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601631 · Cited by 218
Self-citationHoffman, B. E., & Grabowski, P. J. (1992) · Genes & Development · doi:10.1101/gad.6.12b.2554 · Cited by 215
Structural Basis for the Molecular Recognition between Human Splicing Factors U2AF65 and SF1/mBBP
Selenko, P., Gregorovic, G., Sprangers, R., Stier, G., Rhani, Z., Krämer, A., & Sattler, M. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00115-1 · Cited by 212
Kistler, A. L. (2001) · Genes & Development · doi:10.1101/gad.851301 · Cited by 207
A Novel Peptide Recognition Mode Revealed by the X-Ray Structure of a Core U2AF35/U2AF65 Heterodimer
Kielkopf, C. L., Rodionova, N. A., Green, M. R., & Burley, S. K. (2001) · Cell · doi:10.1016/s0092-8674(01)00480-9 · Cited by 203
Pleiss, J. A., Whitworth, G. B., Bergkessel, M., & Guthrie, C. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050090 · Cited by 199
Shen, H., & Green, M. R. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.10.021 · Cited by 199
Chen, J. Y., Stands, L., Staley, J. P., Jackups, R., Latus, L. J., & Chang, T. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00170-8 · Cited by 199
The EF-G-like GTPase Snu114p Regulates Spliceosome Dynamics Mediated by Brr2p, a DExD/H Box ATPase
Small, E. C., Leggett, S. R., Winans, A. A., & Staley, J. P. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.05.043 · Cited by 194
A novel U2-U6 snRNA structure is necessary for mammalian mRNA splicing.Preprint
Sun, J., & Manley, J. L. (1995) · Genes & Development · doi:10.1101/gad.9.7.843 · Cited by 193
Both phosphorylation and dephosphorylation of ASF/SF2 are required for pre-mRNA splicing in vitro.
Cao, W., Jamison, S. F., & García-Blanco, M. A. (1997) · PubMed · Cited by 193
Phosphorylation of spliceosomal protein SAP 155 coupled with splicing catalysisPreprint
Wang, C., Chua, K. F., Seghezzi, W., Lees, E. M., Gozani, O., & Reed, R. (1998) · Genes & Development · doi:10.1101/gad.12.10.1409 · Cited by 187
Sickmier, E. A., Frato, K. E., Shen, H., Paranawithana, S. R., Green, M. R., & Kielkopf, C. L. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.05.025 · Cited by 187
Exon ligation is proofread by the DExD/H-box ATPase Prp22p
Mayas, R. M., Maita, H., & Staley, J. P. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1093 · Cited by 183
Burgess, S. M., & Guthrie, C. (1993) · Cell · doi:10.1016/0092-8674(93)90363-u · Cited by 178
Sharma, S., Kohlstaedt, L. A., Damianov, A., Rio, D. C., & Black, D. L. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1375 · Cited by 177
RBM5/Luca-15/H37 Regulates Fas Alternative Splice Site Pairing after Exon Definition
Bonnal, S., Martínez, C., Förch, P., Bachi, A., Wilm, M. S., & Valcárcel, J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.08.008 · Cited by 176
Herold, N., Will, C. L., Wolf, E., Kastner, B., Urlaub, H., & Lührmann, R. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.01415-08 · Cited by 176
Self-citationSpliceosome disassembly catalyzed by Prp43 and its associated components Ntr1 and Ntr2Preprint
Tsai, R.-T., Fu, R., Yeh, F.-L., Tseng, C. K., Lin, Y. J., Huang, Y.-H., & Cheng, S.-C. (2005) · Genes & Development · doi:10.1101/gad.1377405 · Cited by 173
Warkocki, Z., Odenwälder, P., Schmitzová, J., Platzmann, F., Stark, H., Urlaub, H., Ficner, R., Fabrizio, P., & Lührmann, R. (2009) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1729 · Cited by 172
Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosomePreprint
Tanaka, N., Aronova, A., & Schwer, B. (2007) · Genes & Development · doi:10.1101/gad.1580507 · Cited by 159
Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines
Staley, J. P., & Woolford, J. L. (2009) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2009.01.003 · Cited by 157
Shen, H., & Green, M. R. (2006) · Genes & Development · doi:10.1101/gad.1422106 · Cited by 153
Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles
Kambach, C., Walket, S., & Nagai, K. (1999) · Current Opinion in Structural Biology · doi:10.1016/s0959-440x(99)80032-3 · Cited by 151
Thiophosphorylation of U1-70K protein inhibits pre-mRNA splicing
Tazi, J., Kornstädt, U., Rossi, F., Jeanteur, P., Cathala, G., Brunel, C., & Lührmann, R. (1993) · Nature · doi:10.1038/363283a0 · Cited by 149
“Nought May Endure but Mutability”: Spliceosome Dynamics and the Regulation of Splicing
Smith, D. J., Query, C. C., & Konarska, M. M. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.04.013 · Cited by 149
Binding of the Human Prp31 Nop Domain to a Composite RNA-Protein Platform in U4 snRNP
Liu, S., Li, P., Dybkov, O., Nottrott, S., Hartmuth, K., Lührmann, R., Carlomagno, T., & Wahl, M. C. (2007) · Science · doi:10.1126/science.1137924 · Cited by 149
snRNAs as the catalysts of pre-mRNA splicing
Valadkhan, S. (2005) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2005.10.008 · Cited by 147
The second catalytic step of pre-mRNA splicing.
Umen, J., & Guthrie, C. (1995) · PubMed · Cited by 145
Mathew, R. S., Hartmuth, K., Möhlmann, S., Urlaub, H., Ficner, R., & Lührmann, R. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1415 · Cited by 145
Query, C. C., & Konarska, M. M. (2004) · Molecular Cell · doi:10.1016/s1097-2765(04)00217-5 · Cited by 144
A structural analysis of the group II intron active site and implications for the spliceosome
Keating, K. S., Toor, N., Perlman, P. S., & Pyle, A. M. (2009) · RNA · doi:10.1261/rna.1791310 · Cited by 143
U2–U6 RNA folding reveals a group II intron-like domain and a four-helix junction
Sashital, D. G., Cornilescu, G., & Butcher, S. E. (2004) · Nature Structural & Molecular Biology · doi:10.1038/nsmb863 · Cited by 139
13 Spliceosome Structure and FunctionPreprint
Will, C. L., & Lührmann, R. (2006) · Cold Spring Harbor Monograph Archive · doi:10.1101/087969739.43.369 · Cited by 138
Self-citationA Conformational Rearrangement in the Spliceosome Sets the Stage for Prp22-Dependent mRNA Release
Schwer, B. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.05.003 · Cited by 136
RNA-RNA Interactions in Nuclear Pre-mRNA SplicingPreprint
Nilsen, T. W. (1998) · Cold Spring Harbor Monograph Archive · doi:10.1101/087969509.35.279 · Cited by 135
A role for ubiquitin in the spliceosome assembly pathway
Bellare, P., Small, E. C., Huang, X., Wohlschlegel, J. A., Staley, J. P., & Sontheimer, E. J. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1401 · Cited by 134
Self-splicing group II and nuclear pre-mRNA introns: how similar are they?
Jacquier, A. (1990) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(90)90075-m · Cited by 132
Peña, V., Liu, S., Bujnicki, J. M., Lührmann, R., & Wahl, M. C. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.01.023 · Cited by 132
Shi, Y., Reddy, B. D., & Manley, J. L. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.07.022 · Cited by 131
Xu, Y., & Query, C. C. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.09.022 · Cited by 129
ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8
Maeder, C., Kutach, A. K., & Guthrie, C. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1535 · Cited by 128
Rearrangement of competing U2 RNA helices within the spliceosome promotes multiple steps in splicingPreprint
Perriman, R., & Ares, M. (2007) · Genes & Development · doi:10.1101/gad.1524307 · Cited by 124
RNA splicing: What has phosphorylation got to do with it?
Misteli, T. (1999) · Current Biology · doi:10.1016/s0960-9822(99)80128-6 · Cited by 122
Chan, S., & Cheng, S.-C. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m505060200 · Cited by 122
Repositioning of the Reaction Intermediate within the Catalytic Center of the Spliceosome
Konarska, M. M., Vilardell, J., & Query, C. C. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.01.017 · Cited by 120
Schneider, M., Hsiao, H., Will, C. L., Giet, R., Urlaub, H., & Lührmann, R. (2010) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1718 · Cited by 115
Self-citationSilverman, E. J., Maeda, A., Wei, J., Smith, P., Beggs, J. D., & Lin, R.-J. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.23.10101-10110.2004 · Cited by 115
Both Catalytic Steps of Nuclear Pre-mRNA Splicing Are Reversible
Tseng, C. K., & Cheng, S.-C. (2008) · Science · doi:10.1126/science.1158993 · Cited by 112
U2 toggles iteratively between the stem IIa and stem IIc conformations to promote pre-mRNA splicingPreprint
Hilliker, A. K., Mefford, M. A., & Staley, J. P. (2007) · Genes & Development · doi:10.1101/gad.1536107 · Cited by 109
Schneider, M., Will, C. L., Anokhina, M. M., Tazi, J., Urlaub, H., & Lührmann, R. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.02.027 · Cited by 104
Self-citationStructure and function of an RNase H domain at the heart of the spliceosome
Peña, V., Rozov, A., Fabrizio, P., Lührmann, R., & Wahl, M. C. (2008) · The EMBO Journal · doi:10.1038/emboj.2008.209 · Cited by 102
Shen, H., Zheng, X., Shen, J., Zhang, L., Zhao, R., & Green, M. R. (2008) · Genes & Development · doi:10.1101/gad.1657308 · Cited by 100
An exonic splicing silencer represses spliceosome assembly after ATP-dependent exon recognition
House, A. E., & Lynch, K. W. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1149 · Cited by 98
CRYO-ELECTRON MICROSCOPY OF SPLICEOSOMAL COMPONENTS
Stark, H., & Lührmann, R. (2006) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.35.040405.101953 · Cited by 97
Visualizing the splicing of single pre-mRNA molecules in whole cell extract
Crawford, D. J., Hoskins, A. A., Friedman, L. J., Gelles, J., & Moore, M. J. (2007) · RNA · doi:10.1261/rna.794808 · Cited by 97
Kuhn, A. N., van Santen, M. A., Schwienhorst, A., Urlaub, H., & Lührmann, R. (2008) · RNA · doi:10.1261/rna.1332609 · Cited by 97
Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2
Zhang, L., Xu, T., Maeder, C., Bud, L.-O., Shanks, J., Nix, J. C., Guthrie, C., Pleiss, J. A., & Zhao, R. (2009) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1625 · Cited by 93
Spadaccini, R., Reidt, U., Dybkov, O., Will, C. L., Frank, R., Stier, G., Corsini, L., Wahl, M. C., Lührmann, R., & Sattler, M. (2006) · RNA · doi:10.1261/rna.2271406 · Cited by 92
Self-citationLiu, L., Query, C. C., & Konarska, M. M. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1240 · Cited by 91
Spliceosome Assembly and Composition
Matlin, A. J., & Moore, M. J. (2007) · Advances in experimental medicine and biology · doi:10.1007/978-0-387-77374-2_2 · Cited by 88
Bartels, C., Klatt, C., Lührmann, R., & Fabrizio, P. (2002) · EMBO Reports · doi:10.1093/embo-reports/kvf172 · Cited by 88
Beat the clock: paradigms for NTPases in the maintenance of biological fidelity
Burgess, S. M., & Guthrie, C. (1993) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(93)90094-4 · Cited by 88
Three-dimensional structure of C complex spliceosomes by electron microscopy
Jurica, M. S., Sousa, D. R., Moore, M. J., & Grigorieff, N. (2004) · Nature Structural & Molecular Biology · doi:10.1038/nsmb728 · Cited by 85
Sander, B. O., Golas, M. M., Makarov, E. M., Brahms, H., Kastner, B., Lührmann, R., & Stark, H. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.08.021 · Cited by 85
Ubiquitin binding by a variant Jab1/MPN domain in the essential pre-mRNA splicing factor Prp8p
Bellare, P., Kutach, A. K., Rines, A. K., Guthrie, C., & Sontheimer, E. J. (2006) · RNA · doi:10.1261/rna.2152306 · Cited by 84
Tsai, R.-T., Tseng, C. K., Lee, P.-J., Chen, H.-C., Fu, R., Chang, K.-J., Yeh, F.-L., & Cheng, S.-C. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.01213-07 · Cited by 84
Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase
Peña, V., Mozaffari‐Jovin, S., Fabrizio, P., Orlowski, J., Bujnicki, J. M., Lührmann, R., & Wahl, M. C. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.08.006 · Cited by 83
Golas, M. M., Sander, B. O., Will, C. L., Lührmann, R., & Stark, H. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.02.016 · Cited by 82
Self-citationThree-dimensional structure of a pre-catalytic human spliceosomal complex B
Boehringer, D., Makarov, E. M., Sander, B. O., Makarova, O. V., Kastner, B., Lührmann, R., & Stark, H. (2004) · Nature Structural & Molecular Biology · doi:10.1038/nsmb761 · Cited by 81
Mefford, M. A., & Staley, J. P. (2009) · RNA · doi:10.1261/rna.1582609 · Cited by 81
Chiu, Y.-F., Liu, Y.-C., Chiang, T.-W. W., Yeh, T.-C., Tseng, C. K., Wu, N.-Y., & Cheng, S.-C. (2009) · Molecular and Cellular Biology · doi:10.1128/mcb.00773-09 · Cited by 80
Brenner, T. J., & Guthrie, C. (2005) · Genetics · doi:10.1534/genetics.105.042044 · Cited by 79
Commitment to Splice Site Pairing Coincides with A Complex Formation
Lim, S. R., & Hertel, K. J. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.06.025 · Cited by 76
Protein-free small nuclear RNAs catalyze a two-step splicing reaction
Valadkhan, S., Mohammadi, A., Jaladat, Y., & Geisler, S. J. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0902020106 · Cited by 76
Liu, Y.-C., Chen, H.-C., Wu, N.-Y., & Cheng, S.-C. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.00346-07 · Cited by 76
Inhibition of a spliceosome turnover pathway suppresses splicing defects
Pandit, S., Lynn, B. C., & Rymond, B. C. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0603188103 · Cited by 75
Localization of Prp8, Brr2, Snu114 and U4/U6 proteins in the yeast tri-snRNP by electron microscopy
Häcker, I., Sander, B. O., Golas, M. M., Wolf, E., Karagöz, G. E., Kastner, B., Stark, H., Fabrizio, P., & Lührmann, R. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1506 · Cited by 75
Crystal structure of a core spliceosomal protein interface
Schellenberg, M. J., Edwards, R. A., Ritchie, D. B., Kent, O. A., Golas, M. M., Stark, H., Lührmann, R., Glover, J. N. M., & MacMillan, A. M. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508048103 · Cited by 75
Crystal structure of the β-finger domain of Prp8 reveals analogy to ribosomal proteins
Yang, K., Zhang, L., Xu, T., Heroux, A., & Zhao, R. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0805960105 · Cited by 75
Three-Dimensional Structure of the Native Spliceosome by Cryo-Electron Microscopy
Azubel, M., Wolf, S. G., Sperling, J. M., & Sperling, R. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.07.022 · Cited by 73
Structural elucidation of a PRP8 core domain from the heart of the spliceosome
Ritchie, D. B., Schellenberg, M. J., Gesner, E. M., Raithatha, S. A., Stuart, D. T., & MacMillan, A. M. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1505 · Cited by 73
Insights into the mechanisms of splicing: more lessons from the ribosome: Figure 1.Preprint
Konarska, M. M., & Query, C. C. (2005) · Genes & Development · doi:10.1101/gad.1363105 · Cited by 70
Solution structure of human U1 snRNA. Derivation of a possible three-dimensional model
Krol, A., Westhof, É., Bach, M. A., Lührmann, R., Ebel, J., & Carbon, P. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.13.3803 · Cited by 67
Single-molecule analysis of protein-free U2–U6 snRNAs
Guo, Z., Karunatilaka, K. S., & Rueda, D. S. (2009) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1672 · Cited by 64
Coevolutionary networks of splicing cis -regulatory elements
Xiao, X. G., Wang, Z., Jang, M., & Burge, C. B. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0707349104 · Cited by 61
Spatial mapping of splicing factor complexes involved in exon and intron definition
Ellis, J. D., Llères, D., Denegri, M., Lamond, A. I., & Cáceres, J. F. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200710051 · Cited by 60
Zhang, L., Shen, J., Guarnieri, M. T., Heroux, A., Yang, K., & Zhao, R. (2007) · Protein Science · doi:10.1110/ps.072872007 · Cited by 58
Rhode, B. M., Hartmuth, K., Westhof, É., & Lührmann, R. (2006) · The EMBO Journal · doi:10.1038/sj.emboj.7601134 · Cited by 56
Early organization of pre-mRNA during spliceosome assembly
Kent, O. A., & MacMillan, A. M. (2002) · Nature Structural Biology · doi:10.1038/nsb822 · Cited by 54
Structural characterization of the fission yeast U5.U2/U6 spliceosome complex
Ohi, M. D., Ren, L., Wall, J. S., Gould, K. L., & Walz, T. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611591104 · Cited by 54
Dönmez, G., Hartmuth, K., Kastner, B., Will, C. L., & Lührmann, R. (2007) · Molecular Cell · doi:10.1016/j.molcel.2006.12.019 · Cited by 53
Self-citationSpliceosome structure: Piece by piece
Ritchie, D. B., Schellenberg, M. J., & MacMillan, A. M. (2009) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2009.08.010 · Cited by 53
Exon, intron and splice site locations in the spliceosomal B complex
Wolf, E., Kastner, B., Deckert, J., Merz, C., Stark, H., & Lührmann, R. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.171 · Cited by 51
Splicing of mRNA precursors: the role of RNAs and proteins in catalysis
Wachtel, C., & Manley, J. L. (1900) · Molecular BioSystems · doi:10.1039/b820828j · Cited by 49
RS domain–splicing signal interactions in splicing of U12-type and U2-type introns
Shen, H., & Green, M. R. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1263 · Cited by 49
Splicing Factors SF1 and U2AF Associate in Extraspliceosomal Complexes
Rino, J., Desterro, J. M. P., Pacheco, T. R., Gadella, T. W. J., & Carmo‐Fonseca, M. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.02015-07 · Cited by 49
Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
Burge, C. B., & Wang, Z. (2020) · Carolina Digital Repository (University of North Carolina at Chapel Hill) · doi:10.17615/bzpx-7662 · Cited by 49
Is the spliceosome a ribonucleoprotein enzyme?
Abelson, J. N. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1208-1235 · Cited by 47
Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing
Valadkhan, S., Mohammadi, A., Wachtel, C., & Manley, J. L. (2007) · RNA · doi:10.1261/rna.626207 · Cited by 47
Pre-mRNA Missplicing as a Cause of Human Disease
Novoyatleva, T., Tang, Y., Rafalska, I., & Stamm, S. (2006) · Progress in molecular and subcellular biology · doi:10.1007/978-3-540-34449-0_2 · Cited by 44
Crotti, L. B., Bačíková, D., & Horowitz, D. S. (2007) · Genes & Development · doi:10.1101/gad.1538207 · Cited by 44
Aronova, A., Bačíková, D., Crotti, L. B., Horowitz, D. S., & Schwer, B. (2007) · RNA · doi:10.1261/rna.572807 · Cited by 40
Madhani, H. D., & Guthrie, C. (1994) · Genetics · doi:10.1093/genetics/137.3.677 · Cited by 39
Structural mapping of spliceosomes by electron microscopy
Lührmann, R., & Stark, H. (2009) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2009.01.001 · Cited by 39
Phosphorylation-Dependent Control of the Pre-mRNA Splicing Machinery
Soret, J., & Tazi, J. (2003) · Progress in molecular and subcellular biology · doi:10.1007/978-3-662-09728-1_4 · Cited by 38
Roles of the U5 snRNP in spliceosome dynamics and catalysis
Turner, I. A., Norman, C. M., Churcher, M. J., & Newman, A. J. (2004) · Biochemical Society Transactions · doi:10.1042/bst0320928 · Cited by 38
Karaduman, R., Dube, P., Stark, H., Fabrizio, P., Kastner, B., & Lührmann, R. (2008) · RNA · doi:10.1261/rna.1369808 · Cited by 30
A protein-based EM label for RNA identifies the location of exons in spliceosomes
Alcid, E. A., & Jurica, M. S. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1378 · Cited by 25
A critical assessment of the utility of protein-free splicing systems
Smith, D. J., & Konarska, M. M. (2008) · RNA · doi:10.1261/rna.1322709 · Cited by 23
Smith, D. J., Query, C. C., & Konarska, M. M. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.05.020 · Cited by 19
Crystal Structure of Human Spliceosomal U1 snRNP
Krummel, D. A. P., Oubridge, C., Leung, A. K.-W., Li, J., & Nagai, K. (2008) · Worldwide Protein Data Bank · doi:10.2210/pdb3cw1/pdb · Cited by 10
Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolution
Krummel, D. P., Oubridge, C., Leung, A. K.-W., Li, J., & Nagai, K. (2009) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767309099772 · Cited by 9
Identification and characterization of a short 2′–3′ bond-forming ribozyme
Smith, D. J., & Konarska, M. M. (2008) · RNA · doi:10.1261/rna.1321909 · Cited by 5
Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase
Peña, V., Mozaffari‐Jovin, S., Fabrizio, P., Orlowski, J., Bujnicki, J. M., Lührmann, R., & Wahl, M. C. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.01.018 · Cited by 5
Research works printed but not linked: 1
- Stark H, Lührmann R 2006. Electron cryomicroscopy of spliceosomal components. Ann Rev Biophy Biomol Struct 35: 435–457 [DOI] [PubMed] [Google Scholar]
Cited by
Sorted by citations
The Spliceosome: Design Principles of a Dynamic RNP Machine
Wahl, M. C., Will, C. L., & Lührmann, R. (2009) · Cell · doi:10.1016/j.cell.2009.02.009 · Cited by 2,665
Self-citationMechanisms and Regulation of Alternative Pre-mRNA Splicing
Lee, Y., & Rio, D. C. (2015) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060614-034316 · Cited by 1,291
A day in the life of the spliceosome
Matera, A. G., & Wang, Z. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3742 · Cited by 1,074
Goodall, G. J., & Wickramasinghe, V. O. (2020) · Nature reviews. Cancer · doi:10.1038/s41568-020-00306-0 · Cited by 1,081
Complexity of the Alternative Splicing Landscape in Plants
Reddy, A. S. N., Márquez, Y., Kalyna, M., & Barta, A. (2013) · The Plant Cell · doi:10.1105/tpc.113.117523 · Cited by 867
Metadata
- Authors
- Will, C. L., & Luhrmann, R.
- Affiliations
- Max Planck Institute for Biophysical Chemistry (DE)
- Venue
- Cold Spring Harbor Perspectives in Biology
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2010-12-30
- Volume
- 3
- Issue
- 7
- Pages
- a003707-a003707
- ISSN
- 1943-0264 (ISSN-L)
- PMC
- PMC3119917
- OpenAlex
- W2148393113
- Cited by
- 1,829
- References
- 163
- Citations by year
- 2026: 89 · 2025: 130 · 2024: 141 · 2023: 135 · 2022: 127 · 2021: 170 · 2020: 142 · 2019: 141 · 2018: 122 · 2017: 111 · 2016: 123 · 2015: 100 · 2014: 91 · 2013: 77 · 2012: 63
- Type
- posted content
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Cold Spring Harbor Perspectives in Biology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Deutsche Forschungsgemeinschaft
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
- Keywords
- spliceosome, pre-mRNA splicing, small nuclear ribonucleoproteins, ribonucleoprotein complexes, spliceosome assembly, RNA-RNA interactions, spliceosome structure, active site, RNA-protein interactions
- MeSH terms
- Humans, Models, Genetic, Models, Molecular, Nucleic Acid Conformation, Protein Processing, Post-Translational, Ribonucleoproteins, RNA Precursors, RNA Splicing, Spliceosomes, Ribonucleoproteins, Small Nuclear, Protein Structure, Tertiary, Crystallography, X-Ray, Nuclear Magnetic Resonance, Biomolecular, Catalytic Domain
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review