The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Ancient DNA Damage
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Ancient DNA fragments are typically ultrashort, often less than 100 bp.
“Small amounts of preserved DNA and extensive DNA fragmentation to lengths <100 bp 109 pose serious challenges for extracting DNA molecules from ancient samples.”
From Ancient DNA analysis (2021) · cites this paper as [109]
The FRAGMENTATION section says that DNA from almost all ancient remains is degraded into short fragments, citing a range of 40–500 bp in an early study. It does not establish that fragments are typically shorter than 100 bp; the reported range extends well above that threshold. (LLM, conf=0.86)
Experimental — accuracy not yet measuredPostmortem alterations potentially hinder manipulation of ancient DNA and reduce the amount of retrievable genetic information.
“These postmortem alterations potentially hinder the manipulation of aDNA and reduce the amount of retrievable genetic information 109,120 .”
From Ancient DNA analysis (2021) · cites this paper as [109]
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Citations
Cites
Instability and decay of the primary structure of DNA
Lindahl, T. (1993) · Nature · doi:10.1038/362709a0 · Cited by 5,679
A high-coverage genome sequence from an archaic denisovan individual
Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967
Self-citationHofreiter, M. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.23.4793 · Cited by 684
Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., & Pääbo, S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034131 · Cited by 489
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Flagged first, then by citations
Research works printed but not linked: 1
- Allentoft ME, Collins M, Harker D, Haile J, Oskam CL, Hale ML, Campos PF, Samaniego JA, Gilbert MTP, Willerslev E, et al. 2012. The half-life of DNA in bone: Measuring decay kinetics in 158 dated fossils. Proc R Soc B doi: 10.1098/rspb.2012.1745. · DOI · Paper page
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Orlando, L., Allaby, R., Skoglund, P., Der Sarkissian, C., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-020-00011-0 · Cited by 411
Martiniano, R., Garrison, E., Jones, E. R., Manica, A., & Durbin, R. (2020) · Genome Biology · doi:10.1186/s13059-020-02160-7 · Cited by 128
The Genomic History of the Bronze Age Southern Levant
Agranat-Tamir, L., Waldman, S., Martin, M. A. S., Gokhman, D., Mishol, N., Eshel, T., Cheronet, O., Rohland, N., Mallick, S., Adamski, N., et al. (2020) · Cell · doi:10.1016/j.cell.2020.04.024 · Cited by 80
Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe
Peyrégne, S., Slon, V., Mafessoni, F., de Filippo, C., Hajdinjak, M., Nagel, S., Nickel, B., Essel, E., Le Cabec, A., Wehrberger, K., et al. (2019) · Science Advances · doi:10.1126/sciadv.aaw5873 · Cited by 82
Self-citationSuccessful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus
Ozga, A. T., Nieves‐Colón, M. A., Honap, T. P., Sankaranarayanan, K., Hofman, C. A., Milner, G. R., Lewis, C. M., Stone, A. C., & Warinner, C. (2016) · American Journal of Physical Anthropology · doi:10.1002/ajpa.22960 · Cited by 79
“KAPA HiFi Uracil 1 is a family-B polymerase that has been designed (through inactivation of its uracil-binding pocket) to tolerate and amplify over deaminated cytosine residues (uracils), the most common miscoding lesion observed in ancient DNA (Dabney et al., 2013b).”
Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences
de Filippo, C., Meyer, M., & Prüfer, K. (2018) · BMC Biology · doi:10.1186/s12915-018-0581-9 · Cited by 53
Self-citationThe earliest farmers of northwest China exploited grain-fed pheasants not chickens
Barton, L., Bingham, B., Sankaranarayanan, K., Monroe, C., Thomas, A., & Kemp, B. M. (2020) · Scientific Reports · doi:10.1038/s41598-020-59316-5 · Cited by 28
Early Pleistocene enamel proteome sequences from Dmanisi resolve Stephanorhinus phylogeny
Cappellini, E., Welker, F., Pandolfi, L., Madrigal, J. R., Fotakis, A. K., Lyon, D., Moreno Mayar, V. J., Bukhsianidze, M., Jersie-Christensen, R. R., Mackie, M., et al. (2018) · doi:10.1101/407692 · Cited by 20
Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., et al. (2021) · Ecology and Evolution · doi:10.1002/ece3.7056 · Cited by 20
Metadata
- Authors
- Dabney, J., Meyer, M., & Paabo, S.
- Venue
- Cold Spring Harbor Perspectives in Biology
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2013-05-31
- Volume
- 5
- Issue
- 7
- Pages
- a012567-a012567
- ISSN
- 1943-0264
- Cited by
- 541
- References
- 4
- Language
- en
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