piRNA-mediated transgenerational inheritance of an acquired trait
Open accessAbstract
The maintenance of genome integrity is an essential trait to the successful transmission of genetic information. In animal germ cells, piRNAs guide PIWI proteins to silence transposable elements (TEs) in order to maintain genome integrity. In insects, most TE silencing in the germline is achieved by secondary piRNAs that are produced by a feed-forward loop (the ping-pong cycle), which requires the piRNA-directed cleavage of two types of RNAs: mRNAs of functional euchromatic TEs and heterochromatic transcripts that contain defective TE sequences. The first cleavage that initiates such an amplification loop remains poorly understood. Taking advantage of the existence of strains that are devoid of functional copies of the LINE-like I-element, we report here that in such Drosophila ovaries, the initiation of a ping-pong cycle is exclusively achieved by secondary I-element piRNAs that are produced in the ovary and deposited in the embryonic germline. This unusual secondary piRNA biogenesis, detected in the absence of functional I-element copies, results from the processing of sense and antisense transcripts of several different defective I-element. Once acquired, for instance after ancestor aging, this capacity to produce heterochromatic-only secondary piRNAs is partially transmitted through generations via maternal piRNAs. Furthermore, such piRNAs acting as ping-pong initiators in a chromatin-independent manner confer to the progeny a high capacity to repress the I-element mobility. Our study explains, at the molecular level, the basis for epigenetic memory of maternal immunity that protects females from hybrid dysgenesis caused by transposition of paternally inherited functional I-element.
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piRNAs are inherited maternally and can be amplified by a ping-pong system, helping the organism resist new invasions and adapt its genome to them.
“piRNAs are maternally heritable and can be amplified via a ping-pong system, effectively allowing the organism to resist new invasions and adapt their genome to them 69 .”
From Advances in epigenetics link genetics to the environment and disease (2019) · cites this paper as [69]
In Drosophila, piRNAs produce transgenerational epigenetic inheritance in response to transposable element activity.
“In Drosophila (Fig. 3c), heterochromatin components can induce TEI upon heat shock or osmotic stress 108 , whereas piRNAs produce TEI in response to transposable element activity 69 .”
From Advances in epigenetics link genetics to the environment and disease (2019) · cites this paper as [69]
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Cites
Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216 · see citing works
Repbase Update, a database of eukaryotic repetitive elements
Jurka, J., Kapitonov, V. V., Pavlı́ček, A., Klonowski, P., Kohany, O., & Walichiewicz, J. (2005) · Cytogenetic and Genome Research · doi:10.1159/000084979 · Cited by 3,331 · see citing works
miRBase: integrating microRNA annotation and deep-sequencing data
Kozomara, A., & Griffiths-Jones, S. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1027 · Cited by 3,042 · see citing works
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
Brennecke, J., Aravin, A. A., Stark, A., Dus, M., Kellis, M., Sachidanandam, R., & Hannon, G. J. (2007) · Cell · doi:10.1016/j.cell.2007.01.043 · Cited by 2,524 · see citing works
Spradling, A. C., Drummond‐Barbosa, D., & Kai, T. (2001) · Nature · doi:10.1038/35102160 · Cited by 1,429 · see citing works
PIWI-interacting small RNAs: the vanguard of genome defence
Siomi, M. C., Sato, K., Pezic, D., & Aravin, A. A. (2011) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3089 · Cited by 1,319 · see citing works
A Slicer-Mediated Mechanism for Repeat-Associated siRNA 5' End Formation in Drosophila
Gunawardane, L. S., Saito, K., Nishida, K. M., Miyoshi, K., Kawamura, Y., Nagami, T., Siomi, H., & Siomi, M. C. (2007) · Science · doi:10.1126/science.1140494 · Cited by 1,173 · see citing works
A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice
Aravin, A. A., Sachidanandam, R., Bourc’his, D., Schaefer, C. B., Pezić, D., Tóth, K. F., Bestor, T. H., & Hannon, G. J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.09.003 · Cited by 1,173 · see citing works
Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary
Malone, C. D., Brennecke, J., Dus, M., Stark, A., McCombie, W. R., Sachidanandam, R., & Hannon, G. J. (2009) · Cell · doi:10.1016/j.cell.2009.03.040 · Cited by 864 · see citing works
An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
Brennecke, J., Malone, C. D., Aravin, A. A., Sachidanandam, R., Stark, A., & Hannon, G. J. (2008) · Science · doi:10.1126/science.1165171 · Cited by 773 · see citing works
Unlocking the secrets of the genome
Celniker, S., Dillon, L. A. L., Gerstein, M., Gunsalus, K. C., Henikoff, S., Karpen, G. H., Kellis, M., Lai, E. C., Lieb, J. D., MacAlpine, D. M., et al. (2009) · Nature · doi:10.1038/459927a · Cited by 767 · see citing works
A Niche Maintaining Germ Line Stem Cells in the Drosophila Ovary
Xie, T., & Spradling, A. C. (2000) · Science · doi:10.1126/science.290.5490.328 · Cited by 765 · see citing works
Characterization of the piRNA Complex from Rat Testes
Iseni, F., Barge, A., Baudin, F., Blondel, D., Ruigrok, R. W. H., Schoehn, G., & Mavrakis, M. (2006) · Cited by 714 · see citing works
Junk DNA as an evolutionary force
Biémont, C., & Vieira, C. P. (2006) · Nature · doi:10.1038/443521a · Cited by 705 · see citing works
An endogenous small interfering RNA pathway in Drosophila
Czech, B., Malone, C. D., Zhou, R., Stark, A., Schlingeheyde, C., Dus, M., Perrimon, N., Kellis, M., Wohlschlegel, J. A., Sachidanandam, R., et al. (2008) · Nature · doi:10.1038/nature07007 · Cited by 692 · see citing works
Endogenous siRNAs Derived from Transposons and mRNAs in <i>Drosophila</i> Somatic Cells
Ghildiyal, M., Seitz, H., Horwich, M. D., Li, C., Du, T., Lee, S., Xu, J., Kittler, E. L. W., Zapp, M. L., Weng, Z., et al. (2008) · Science · doi:10.1126/science.1157396 · Cited by 645 · see citing works
Nicol, J. W., Helt, G. A., Blanchard, S. G., Raja, A. N., & Loraine, A. E. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp472 · Cited by 623 · see citing works
Klattenhoff, C., Xi, H. S., Li, C., Lee, S., Xu, J. L., Khurana, J. S., Zhang, F., Schultz, N., Koppetsch, B. S., Nowosielska, A., et al. (2009) · Cell · doi:10.1016/j.cell.2009.07.014 · Cited by 461 · see citing works
Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
Kawamura, Y., Saito, K., Taishin Kin, A., Ono, Y., Asai, K., Sunohara, T., Okada, T. N., Siomi, M. C., & Siomi, H. (2008) · Nature · doi:10.1038/nature06938 · Cited by 450 · see citing works
The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
Okamura, K., Chung, W., Ruby, J. G., Guo, H., Bartel, D. P., & Lai, E. C. (2008) · Nature · doi:10.1038/nature07015 · Cited by 391 · see citing works
<i>Drosophila</i> PIWI associates with chromatin and interacts directly with HP1a
Brower-Toland, B., Findley, S. D., Jiang, L., Liu, L., Yin, H., Dus, M., Zhou, P., Elgin, S. C. R., & Lin, H. (2007) · Genes & Development · doi:10.1101/gad.1564307 · Cited by 350 · see citing works
ISOLATION AND CHARACTERIZATION OF SEX-LINKED FEMALE-STERILE MUTANTS IN DROSOPHILA MELANOGASTER
Gans, M., Audit, C., & Masson, M. (1975) · Genetics · doi:10.1093/genetics/81.4.683 · Cited by 329 · see citing works
Harris, A. N., & Macdonald, P. M. (2001) · Development · doi:10.1242/dev.128.14.2823 · Cited by 329 · see citing works
Huang, H., Gao, Q., Peng, X., Choi, S., Sarma, K., Ren, H., Morris, A. J., & Frohman, M. A. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.01.004 · Cited by 323 · see citing works
Watanabe, T., Chuma, S., Yamamoto, Y., Kuramochi‐Miyagawa, S., Totoki, Y., Toyoda, A., Hoki, Y., Fujiyama, A., Shibata, T., Sado, T., et al. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.01.005 · Cited by 306 · see citing works
Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in DrosophilaPreprint
Saito, K., Ishizu, H., Komai, M., Kotani, H., Kawamura, Y., Nishida, K. M., Siomi, H., & Siomi, M. C. (2010) · Genes & Development · doi:10.1101/gad.1989510 · Cited by 301 · see citing works
Bucheton, A., Paro, R., Sang, H. M., Pélisson, A., & Finnegan, D. (1984) · Cell · doi:10.1016/0092-8674(84)90536-1 · Cited by 275 · see citing works
Olivieri, D., Sykora, M. M., Sachidanandam, R., Mechtler, K., & Brennecke, J. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.212 · Cited by 268 · see citing works
The piRNA pathway: a fly's perspective on the guardian of the genome
Senti, K.-A., & Brennecke, J. (2010) · Trends in Genetics · doi:10.1016/j.tig.2010.08.007 · Cited by 267 · see citing works
The Role of PIWI and the miRNA Machinery in Drosophila Germline Determination
Megosh, H. B., Cox, D. N., Campbell, C. R., & Lin, H. (2006) · Current Biology · doi:10.1016/j.cub.2006.08.051 · Cited by 263 · see citing works
3′ End Formation of PIWI-Interacting RNAs In Vitro
Kawaoka, S., Izumi, N., Katsuma, S., & Tomari, Y. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.07.029 · Cited by 254 · see citing works
Adaptation to P Element Transposon Invasion in Drosophila melanogaster
Khurana, J. S., Wang, J., Xu, J. L., Koppetsch, B. S., Thomson, T., Nowosielska, A., Li, C., Zamore, P. D., Weng, Z., & Theurkauf, W. E. (2011) · Cell · doi:10.1016/j.cell.2011.11.042 · Cited by 246 · see citing works
piRNA Production Requires Heterochromatin Formation in Drosophila
Rangan, P., Malone, C. D., Navarro, C., Newbold, S. P., Hayes, P. S., Sachidanandam, R., Hannon, G. J., & Lehmann, R. (2011) · Current Biology · doi:10.1016/j.cub.2011.06.057 · Cited by 231 · see citing works
Stem Cell Aging Is Controlled Both Intrinsically and Extrinsically in the Drosophila Ovary
Pan, L., Chen, S., Weng, C., Call, G., Zhu, D., Tang, H., Zhang, N., & Xie, T. (2007) · Cell Stem Cell · doi:10.1016/j.stem.2007.09.010 · Cited by 211 · see citing works
Handler, D., Olivieri, D., Novatchkova, M., Gruber, F. S., Meixner, K., Mechtler, K., Stark, A., Sachidanandam, R., & Brennecke, J. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.308 · Cited by 190 · see citing works
Selectivity of protein oxidative damage during aging in Drosophila melanogaster
Nilanjana, D. A. S., Levine, R. L., Orr, W. C., & Sohal, R. S. (2001) · Biochemical Journal · doi:10.1042/0264-6021:3600209 · Cited by 186 · see citing works
Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell linePreprint
Lau, N. C., Robine, N., Martin, R., Chung, W., Niki, Y., Berezikov, E., & Lai, E. C. (2009) · Genome Research · doi:10.1101/gr.094896.109 · Cited by 184 · see citing works
Separation of stem cell maintenance and transposon silencing functions of Piwi protein
Klenov, M. S., Sokolova, O. A., Yakushev, E. Y., Stolyarenko, A. D., Mikhaleva, E. A., Lavrov, S. A., & Gvozdev, V. A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1106676108 · Cited by 182 · see citing works
Small RNA-Mediated Quiescence of Transposable Elements in Animals
Saito, K., & Siomi, M. C. (2010) · Developmental Cell · doi:10.1016/j.devcel.2010.10.011 · Cited by 172 · see citing works
Hybrid dysgenesis in Drosopjila melanogaster: rules of inheritance of female sterility*
Engels, W. R. (2007) · Genetics Research · doi:10.1017/s0016672308009592 · Cited by 163 · see citing works
Hybrid dysgenesis inDrosophila melanogaster: rules of inheritance of female sterility
Engels, W. R. (1979) · Genetics Research · doi:10.1017/s001667230001836x · Cited by 150 · see citing works
Probing the initiation and effector phases of the somatic piRNA pathway inDrosophilaPreprint
Haase, A. D. D., Fenoglio, S., Muerdter, F., Guzzardo, P. M., Czech, B., Pappin, D., Chen, C., Gordon, A., & Hannon, G. J. (2010) · Genes & Development · doi:10.1101/gad.1968110 · Cited by 143 · see citing works
piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline
Chambeyron, S., Popkova, A., Payen-Groschêne, G., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0805943105 · Cited by 134 · see citing works
Self-citationZamparini, A. L., Davis, M. Y., Malone, C. D., Vieira, E., Zavadil, J., Sachidanandam, R., Hannon, G. J., & Lehmann, R. (2011) · Development · doi:10.1242/dev.069187 · Cited by 121 · see citing works
Vaury, C., Bucheton, A., & Pélisson, A. (1989) · Chromosoma · doi:10.1007/bf00329686 · Cited by 120 · see citing works
Oxidative stress and aging reduce COX I RNA and cytochrome oxidase activity in Drosophila
Schwarze, S. R., Weindruch, R. H., & Aiken, J. M. (1998) · Free Radical Biology and Medicine · doi:10.1016/s0891-5849(98)00153-1 · Cited by 97 · see citing works
Bucheton, A., Lavige, J.-M., Picard, G., et al. (1976) · Heredity · doi:10.1038/hdy.1976.38 · Cited by 94 · see citing works
Chaboissier, M., Busseau, I., Prosser, J., et al. (1990) · The EMBO Journal · doi:10.1002/j.1460-2075.1990.tb07566.x · Cited by 90 · see citing works
I elements and the Drosophila genome
Bucheton, A., Vaury, C., Chaboissier, M., Abad, P., P�lisson, A., & Simonelig, M. (1992) · Genetica · doi:10.1007/bf00133719 · Cited by 89 · see citing works
Zygotic amplification of secondary piRNAs during silkworm embryogenesis
Kawaoka, S., Arai, Y., Kadota, K., et al. (2011) · RNA · doi:10.1261/rna.2709411 · Cited by 61 · see citing works
Bucheton, A. (1979) · Genetics · doi:10.1093/genetics/93.1.131 · Cited by 56 · see citing works
Ronsseray, S., Lemaître, B., & Coen, D. (1993) · Molecular and General Genetics MGG · doi:10.1007/bf00280208 · Cited by 55 · see citing works
Pélisson, A., & Bregliano, J. C. (1987) · Molecular and General Genetics MGG · doi:10.1007/bf00331594 · Cited by 41 · see citing works
Bucheton, A. (1978) · Heredity · doi:10.1038/hdy.1978.106 · Cited by 40 · see citing works
Vaury, C., Abad, P., Pélisson, A., et al. (1990) · Journal of Molecular Evolution · doi:10.1007/bf02106056 · Cited by 34 · see citing works
Chambeyron, S., Bucheton, A., & Busseau, I. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m200996200 · Cited by 28 · see citing works
Self-citationI elements in Drosophila: in vivo retrotransposition and regulation
Chambeyron, S., & Bucheton, A. (2005) · Cytogenetic and Genome Research · doi:10.1159/000084955 · Cited by 27 · see citing works
Self-citationDramard, X., Heidmann, T., & Jensen, S. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000304 · Cited by 19 · see citing works
I Elements inDrosophila melanogaster
Bucheton, A., Busseau, I., & Teninges, D. (2007) · doi:10.1128/9781555817954.ch33 · Cited by 17 · see citing works
Jannin, L., Arkoun, M., Ourry, A., et al. (2012) · Cited by 10 · see citing works
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Research works printed but not linked: 1
- Bucheton A, Busseau I, Teninges D. 2002. I element in Drosophila melanogaster. In Mobile DNA II (ed. NL Craig et al.), pp. 796-812. ASM, Washington, DC.
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Advances in epigenetics link genetics to the environment and disease
Cavalli, G., & Heard, E. (2019) · Nature · doi:10.1038/s41586-019-1411-0 · Cited by 1,509 · see citing works
Gapp, K., von Ziegler, L., Tweedie‐Cullen, R. Y., & Mansuy, I. M. (2014) · BioEssays · doi:10.1002/bies.201300116 · Cited by 136 · see citing works
- Authors
- Grentzinger, T., Armenise, C., Brun, C., Mugat, B., Serrano, V., Pelisson, A., & Chambeyron, S.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Corresponding author
- Chambeyron, Séverine
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2012-05-03
- Volume
- 22
- Issue
- 10
- Pages
- 1877-1888
- ISSN
- 1088-9051 (ISSN-L)
- PMC
- PMC3460183
- OpenAlex
- W2157193551
- Cited by
- 162
- References
- 60
- Citations by year
- 2026: 2 · 2025: 8 · 2024: 7 · 2023: 4 · 2022: 11 · 2021: 6 · 2020: 15 · 2019: 15 · 2018: 6 · 2017: 14 · 2016: 8 · 2015: 13 · 2014: 24 · 2013: 26 · 2012: 3
- Type
- posted content
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Genome Research (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- HAL (submittedVersion, cc-by-nc)
- Funders
- Association pour la Recherche sur le Cancer
- Agence Nationale de la Recherche
- Centre National de la Recherche Scientifique
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- piRNA, transgenerational inheritance, ping-pong cycle, transposon silencing, Drosophila, epigenetic memory, hybrid dysgenesis, germline, transposon mobility
- MeSH terms
- Aging, Animals, Chromatin, DNA Transposable Elements, Drosophila, Female, Male, RNA Precursors, Transcription, Genetic, Quantitative Trait, Heritable, Gene Silencing, RNA, Small Interfering
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