PIWI-interacting small RNAs: the vanguard of genome defence
Abstract
PIWI-interacting RNAs (piRNAs) are a distinct class of small non-coding RNAs that form the piRNA-induced silencing complex (piRISC) in the germ line of many animal species. The piRISC protects the integrity of the genome from invasion by 'genomic parasites'--transposable elements--by silencing them. Owing to their limited expression in gonads and their sequence diversity, piRNAs have been the most mysterious class of small non-coding RNAs regulating RNA silencing. Now, much progress is being made into our understanding of their biogenesis and molecular functions, including the specific subcellular compartmentalization of the piRNA pathway in granular cytoplasmic bodies.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The function of piwi in regard to piRNA production and transposable element silencing is well established in the germline.
“While the function of piwi in regard to piRNA production and transposable element silencing is well established in the germline29, and piRNAs are known to exist in the Drosophila and mammalian brain30,31, it is currently unknown if piwi reduction affects transposable element transcripts in the brain.”
From Pathogenic tau-induced piRNA depletion promotes neuronal death through transposable element dysregulation in neurodegenerative tauopathies (2018) · cites this paper as [29]
Cites
The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race
Aravin, A. A., Hannon, G. J., & Brennecke, J. (2007) · Science · doi:10.1126/science.1146484 · Cited by 1,096 · see citing works
Self-citationFunctional involvement of Tudor and dPRMT5 in the piRNA processing pathway in Drosophila germlines
Nishida, K. M., Okada, T. N., Kawamura, T., Mituyama, T., Kawamura, Y., Inagaki, S., Huang, H., Chen, D., Kodama, T., Siomi, H., et al. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.365 · Cited by 197 · see citing works
Self-citationMével-Ninio, M., Pelisson, A., Kinder, J., Campos, A. R., & Bucheton, A. (2007) · Genetics · doi:10.1534/genetics.106.068106 · Cited by 128 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Regulation of microRNA biogenesis
Ha, M., & Kim, V. N. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3838 · Cited by 5,462 · see citing works
DNA methylation: roles in mammalian development
Smith, Z. D., & Meissner, A. (2013) · Nature Reviews Genetics · doi:10.1038/nrg3354 · Cited by 3,045 · see citing works
Long noncoding RNAs: past, present, and future
Kung, J. T. Y., Colognori, D., & Lee, J. T. (2013) · Genetics · doi:10.1534/genetics.112.146704 · Cited by 1,874 · see citing works
CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
Bhaya, D., Davison, M., & Barrangou, R. (2011) · Annual Review of Genetics · doi:10.1146/annurev-genet-110410-132430 · Cited by 914 · see citing works
Restricting retrotransposons: a review
Goodier, J. L. (2016) · Mobile DNA · doi:10.1186/s13100-016-0070-z · Cited by 436 · see citing works
Mobile DNA in Health and Disease
Kazazian, H. H., & Moran, J. V. (2017) · New England Journal of Medicine · doi:10.1056/nejmra1510092 · Cited by 445 · see citing works
de Castro Barbosa, T., Ingerslev, L. R., Alm, P. S., Versteyhe, S., Massart, J., Rasmussen, M., Donkin, I., Sjögren, R., Mudry, J. M., Vetterli, L., et al. (2016) · Molecular Metabolism · doi:10.1016/j.molmet.2015.12.002 · Cited by 417 · see citing works
Sun, W., Samimi, H., Gamez, M., Zare, H., & Frost, B. (2018) · Nature Neuroscience · doi:10.1038/s41593-018-0194-1 · Cited by 315 · see citing works
A heterochromatin-dependent transcription machinery drives piRNA expression
Andersen, P. R., Tirian, L., Vunjak, M., & Brennecke, J. (2017) · Nature · doi:10.1038/nature23482 · Cited by 280 · see citing works
Czech, B., Preall, J. B., McGinn, J., & Hannon, G. J. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.04.007 · Cited by 269 · see citing works
An epigenetic framework for neurodevelopmental disorders: From pathogenesis to potential therapy
Millan, M. J. (2013) · Neuropharmacology · doi:10.1016/j.neuropharm.2012.11.015 · Cited by 229 · see citing works
piRNA-mediated transgenerational inheritance of an acquired trait
Grentzinger, T., Armenise, C., Brun, C., Mugat, B., Serrano, V., Pelisson, A., & Chambeyron, S. (2012) · Genome Research · doi:10.1101/gr.136614.111 · Cited by 162 · see citing works
A somatic piRNA pathway in the Drosophila fat body ensures metabolic homeostasis and normal lifespan
Jones, B. C., Wood, J. G., Chang, C., Tam, A. D., Franklin, M. J., Siegel, E. R., & Helfand, S. L. (2016) · Nature Communications · doi:10.1038/ncomms13856 · Cited by 130 · see citing works
Lifetime stress experience: Transgenerational epigenetics and germ cell programming
Bale, T. L. (2014) · Dialogues in Clinical Neuroscience · doi:10.31887/dcns.2014.16.3/tbale · Cited by 129 · see citing works
Dennis, S., Sheth, U., Feldman, J. L., English, K. A., & Priess, J. R. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002591 · Cited by 88 · see citing works
Rodgers, A. B., & Bale, T. L. (2015) · Biological Psychiatry · doi:10.1016/j.biopsych.2015.03.018 · Cited by 91 · see citing works
Epigenetic inheritance through the female germ-line: The known, the unknown, and the possible
Clarke, H. J., & Vieux, K.-F. (2015) · Seminars in Cell & Developmental Biology · doi:10.1016/j.semcdb.2015.07.003 · Cited by 79 · see citing works
Mavragani, C. P., Nezos, A., Sagalovskiy, I., Seshan, S., Kirou, K. A., & Crow, M. K. (2018) · Journal of Autoimmunity · doi:10.1016/j.jaut.2017.10.004 · Cited by 85 · see citing works
Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice
Yao, Q., Cao, G., Li, M., Wu, B., Zhang, X., Zhang, T., Guo, J., Yin, H., Shi, L., Chen, J., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1809744115 · Cited by 41 · see citing works
Larriba, E., & Del Mazo, J. (2016) · International Journal of Molecular Sciences · doi:10.3390/ijms17040452 · Cited by 47 · see citing works
Exploring the read-write genome: mobile DNA and mammalian adaptation
Shapiro, J. A. (2017) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/10409238.2016.1226748 · Cited by 30 · see citing works
- Authors
- Siomi, M. C., Sato, K., Pezic, D., & Aravin, A. A.
- Affiliations
- Keio University (JP)
- California Institute of Technology (US)
- Corresponding author
- Siomi, Mikiko C.
- Aravin, Alexei A.
- Venue
- Nature Reviews Molecular Cell Biology
- Published
- 2011-03-23
- Volume
- 12
- Issue
- 4
- Pages
- 246-258
- ISSN
- 1471-0072 (ISSN-L)
- 1471-0080
- OpenAlex
- W2118420574
- Cited by
- 1,319
- References
- 3
- Citations by year
- 2026: 40 · 2025: 71 · 2024: 52 · 2023: 57 · 2022: 82 · 2021: 88 · 2020: 95 · 2019: 82 · 2018: 93 · 2017: 90 · 2016: 119 · 2015: 103 · 2014: 104 · 2013: 104 · 2012: 103
- FWCI
- 11.24
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Reviews Molecular Cell Biology (publishedVersion)
- PubMed (publishedVersion)
- CaltechAUTHORS (California Institute of Technology) (submittedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Funders
- National Institutes of Health (1dp2od007371-01)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (R00HD057233)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- piRNA, transposon silencing, RNA silencing, small RNA, piRNA biogenesis, germline, subcellular compartmentalization
- MeSH terms
- Animals, DNA Transposable Elements, Models, Genetic, Mutagenesis, Insertional, Genome, RNA Interference, RNA, Small Interfering, RNA, Small Untranslated
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review