Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
Siepel, Adam, Bejerano, Gill, Pedersen, Jakob S., Hinrichs, Angie S., Hou, Minmei, Rosenbloom, Kate, Clawson, Hiram, Spieth, John, Hillier, LaDeana W., Richards, Stephen, Weinstock, George M., Wilson, Richard K., Gibbs, Richard A., Kent, W. James, Miller, Webb, Haussler, David·2005·Genome Research
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Items 1,401–1,500 of 4,071
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- Conserved long-range base pairings are associated with pre-mRNA processing of human genesSvetlana Kalmykova, Marina Kalinina, Stepan Denisov, Alexey Mironov, Dmitry Aleksandrovich Skvortsov, Roderic Guigó, Dmitri Davidovich Pervouchine · 2021 · Nature Communications
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- Using Computational Simulations to Model Deleterious Variation and Genetic Load in Natural PopulationsChristopher C. Kyriazis, Jacqueline A. Robinson, Kirk E. Lohmueller · 2023 · The American Naturalist
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- microPIR: An Integrated Database of MicroRNA Target Sites within Human Promoter SequencesJittima Piriyapongsa, Chaiwat Bootchai, Chumpol Ngamphiw, Sissades Tongsima · 2012 · PLoS ONE
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- Prediction of Polycomb target genes in mouse embryonic stem cellsYingchun Liu, Zhen Shao, Guo‐Cheng Yuan · 2010 · Genomics
- LEAP: Using machine learning to support variant classification in a clinical settingCarmen Lai, Anjali D. Zimmer, Robert O'Connor, Serra Kim, Ray Chan, Jeroen van den Akker, Alicia Yiran Zhou, Scott Topper, Gilad Mishne · 2020 · Human Mutation
- Transcription factor RFX7 governs a tumor suppressor network in response to p53 and stressLuis Coronel, Konstantin Riege, Katjana Schwab, Silke Förste, David Häckes, Lena Semerau, Stephan H. Bernhart, Reiner Siebert, Steve Hoffmann, Martin Fischer · 2021 · Nucleic Acids Research
- Polymorphisms in the hepatic lipase gene affect plasma HDL-cholesterol levels in a Turkish populationUğur Hodoğlugil, David W. Williamson, Robert W. Mahley · 2009 · Journal of Lipid Research
- Nkx3-1 and LEF-1 Function as Transcriptional Inhibitors of Estrogen Receptor ActivityKelly A. Holmes, Jun S. Song, Xiaole S. Liu, Myles A Brown, Jason S. Carroll · 2008 · Cancer Research
- Identifying cis-regulatory modules by combining comparative and compositional analysis of DNANora Pierstorff, Casey Bergman, Thomas Wiehe · 2006 · Bioinformatics
- Conserved introns reveal novel transcripts in Drosophila melanogasterMichael Hiller, Sven Findeiß, Sandro Lein, Manja Marz, Claudia Nickel, Dominic Rose, Christine Schulz, Rolf Backofen, Sonja J. Prohaska, Gunter Reuter et al. · 2009 · Genome Research
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- Identifying Rare Variants Associated with Complex Traits via SequencingBingshan Li, Dajiang J. Liu, Suzanne M. Leal · 2013 · Current Protocols in Human Genetics
- Multiscale representation of genomic signalsTheo Knijnenburg, Stephen A. Ramsey, Benjamin P. Berman, Kathleen A Kennedy, Arian F. A. Smit, Lodewyk F.A. Wessels, Peter W. Laird, Alan A. Aderem, Ilya Shmulevich · 2014 · Nature Methods
- Emerging trends of long non‐coding RNA s in gene activationJaya Krishnan, Rakesh K. Mishra · 2013 · FEBS Journal
- A post-transcriptional mechanism pacing expression of neural genes with precursor cell differentiation statusWeijun Dai, Wencheng Li, Mainul Hoque, Zhuyun Li, Bin Tian, Eugene V. Makeyev · 2015 · Nature Communications
- CDH23 Methylation Status and Presbycusis Risk in Elderly WomenAmal Bouzid, Ibtihel Smeti, Amine Chakroun, Salma Loukil, Abdullah Ahmed Gibriel, M’hamed Grati, Abdelmonem Ghorbel, Saber Masmoudi · 2018 · Frontiers in Aging Neuroscience
- Detection of long non–coding RNA homology, a comparative study on alignment and alignment–free metricsTeresa Noviello, Antonella Di Liddo, Giovanna Maria Ventola, Antonietta Spagnuolo, Salvatore D’Aniello, Michele Ceccarelli, Luigi Cerulo · 2018 · BMC Bioinformatics
- PIANO: A Web Server for Pseudouridine-Site (Ψ) Identification and Functional AnnotationBowen Song, Yujiao Tang, Zhen Cheng Wei, Gang Liu, Jionglong Su, Jia Meng, Kunqi Chen · 2020 · Frontiers in Genetics
- The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicatesDamiano Porcelli, Paolo Barsanti, Graziano Pesole, Corrado Caggese · 2007 · BMC Evolutionary Biology
- Maintenance of transposon-free regions throughout vertebrate evolutionCas Simons, Igor V. Makunin, Michael Pheasant, John S. Mattick · 2007 · BMC Genomics
- VIPdb, a genetic variant impact predictor databaseHu, Zhiqiang, Yu, Changhua, Furutsuki, Mabel, Andreoletti, Gaia, Ly, Melissa, Hoskins, Roger, Adhikari, Aashish N., Brenner, Steven E. · 2019 · Human Mutation
- UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regionsClaudio Lo Giudice, Federico Zambelli, Matteo Chiara, Giulio Pavesi, Marco Antonio Tangaro, Ernesto Picardi, Graziano Pesole · 2022 · Nucleic Acids Research
- Regulation of the Dynamic Chromatin Architecture of the Epidermal Differentiation Complex Is Mediated by a c-Jun/AP-1-Modulated EnhancerInez Y. Oh, Danielle Albea, Zane A. Goodwin, A. Quiggle, Breeana P Baker, Ann M. Guggisberg, Jessica H. Geahlen, Grace M. Kroner, Cristina de Guzman Strong · 2014 · Journal of Investigative Dermatology
- Identification of a dopaminergic enhancer indicates complexity in vertebrate dopamine neuron phenotype specificationEsther Fujimoto, Tamara J. Stevenson, Chi-Bin Chien, Joshua L. Bonkowsky · 2011 · Developmental Biology
- COMPARING SEQUENCE AND EXPRESSION FOR PREDICTING microRNA TARGETS USING GenMiR3Jong‐Chin Huang, Brendan J. Frey, Quaid Morris · 2007 · Pacific Symposium on Biocomputing (PSB)
- A homolog of lariat-debranching enzyme modulates turnover of branched RNAStephen M. Garrey, Adam Katolik, Mantas Prekeris, Xueni Li, Kerri T. York, Sarah S. Bernards, Stanley Fields, Rui Zhao, Masad José Damha, Jay R. Hesselberth · 2014 · RNA
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- Analysis of the Entire Ryanodine Receptor type 1 and Alpha 1 Subunit of the Dihydropyridine Receptor (CACNA1S) Coding Regions for Variants Associated with Malignant Hyperthermia in Australian FamiliesRobyn Gillies, Andrew R. Bjorksten, Desirée du Sart, Brad Hockey · 2015 · Anaesthesia and Intensive Care
- Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequencesMickaël Leclercq, Abdoulaye Baniré Diallo, Mathieu Blanchette · 2016 · Nucleic Acids Research
- m6ASNP: a tool for annotating genetic variants by m6A functionShuai Jiang, Yubin Xie, Zhihao He, Ya Zhang, Yuli Zhao, Li Chen, Yueyuan Zheng, Yanyan Miao, Zhixiang Zuo, Jian Ren · 2018 · GigaScience
- Genome Wide Identification of Novel Long Non-coding RNAs and Their Potential Associations With Milk Proteins in Chinese Holstein CowsWentao Cai, Cong Li, Shuli Liu, Chenghao Zhou, Hongwei Holly Yin, Jiuzhou Song, Qin Zhang, Shengli Zhang · 2018 · Frontiers in Genetics
- Familial Cancer Variant Prioritization Pipeline version 2 (FCVPPv2) applied to a papillary thyroid cancer familyAbhishek Kumar, Obul Reddy Bandapalli, Nagarajan Paramasivam, Sara Giangiobbe, Chiara Diquigiovanni, Elena Bonora, Roland Eils, Matthias Schlesner, Kari Hemminki, Asta Försti · 2018 · Scientific Reports
- Extensive Structural Differences of Closely Related 3′ mRNA Isoforms: Links to Pab1 Binding and mRNA StabilityZarmik Moqtaderi, Joseph V. Geisberg, Kevin Struhl · 2018 · Molecular Cell
- Evolution of Mechanisms that Control Mating in Drosophila MalesOsama M. Ahmed, Aram Avila-Herrera, Khin May Tun, Paula Hayakawa Serpa, Justin Peng, Srinivas Parthasarathy, Jon-Michael Knapp, David L. Stern, Graeme W. Davis, Katherine S. Pollard et al. · 2019 · Cell Reports
- The impact of genetic adaptation on chimpanzee subspecies differentiationJoshua M. Schmidt, Marc de Manuel, Tomàs Marquès‐Bonet, Sergi Castellano, Aida M. Andrés · 2019 · PLoS Genetics
- Computational Tools to Assess the Functional Consequences of Rare and Noncoding Pharmacogenetic VariabilityYitian Zhou, Volker Martin Lauschke · 2021 · Clinical Pharmacology & Therapeutics
- The 3D mutational constraint on amino acid sites in the human proteomeBian Li, Dan M. Roden, John A. Capra · 2022 · Nature Communications
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- Gene Expression Profile of the Hippocampus of Rats Subjected to Chronic Immobilization StressXiaohong Li, Jiaxu Chen, Guang-Xin Yue, Yueyun Liu, Xin Zhao, Xiao-Ling Guo, Qun Liu, You-Ming Jiang, Ming-Hua Bai · 2013 · PLoS ONE
- Ultraconserved Elements: Analyses of Dosage Sensitivity, Motifs and BoundariesCharleston W. K. Chiang, Adnan Derti, Daniel Schwartz, Michael F. Chou, Joel N. Hirschhorn, C-ting Wu · 2008 · Genetics
- Orthologous MicroRNA Genes Are Located in Cancer-Associated Genomic Regions in Human and MouseIgor V. Makunin, Michael Pheasant, Cas Simons, John S. Mattick · 2007 · PLoS ONE
- Combinatorial binding of transcription factors in the pluripotency control regions of the genomeLuciana Ferraris, Allan P. Stewart, Jinsuk Kang, Alec M. DeSimone, Matthew P. Gemberling, Dean R Tantin, William Guy Fairbrother · 2011 · Genome Research
- Noncoding origins of anthropoid traits and a new null model of transposon functionalizationRicardo C.H. del Rosario, Nirmala Arul Rayan, Shyam Prabhakar · 2014 · Genome Research
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