Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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Items 1,801–1,900 of 4,071

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2. Family‐based SNP association study on 8q24 in bipolar disorder
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3. Towards realistic benchmarks for multiple alignments of non-coding sequences
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4. Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
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5. Selection Against Maternal microRNA Target Sites in Maternal Transcripts
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6. Identification of potential cancer-related pseudogenes in lung adenocarcinoma based on ceRNA hypothesis
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8. The temporal landscape of recursive splicing during Pol II transcription elongation in human cells
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9. Numerous recursive sites contribute to accuracy of splicing in long introns in flies
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10. Setup and Validation of a Targeted Next-Generation Sequencing Approach for the Diagnosis of Lysosomal Storage Disorders
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13. An integrated expression phenotype mapping approach defines common variants in LEP, ALOX15 and CAPNS1 associated with induction of IL-6
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14. Patterns of sequence conservation in presynaptic neural genes
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16. Resolving the three-dimensional interactome of human accelerated regions during human and chimpanzee neurodevelopment
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17. mRNA initiation and termination are spatially coordinated
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18. A Two-Stage Evaluation of Genetic Variation in Immune and Inflammation Genes with Risk of Non-Hodgkin Lymphoma Identifies New Susceptibility Locus in 6p21.3 Region
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19. Neutral Evolution of Robustness in Drosophila microRNA Precursors
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21. Loss of the Hematopoietic Stem Cell Factor GATA2 in the Osteogenic Lineage Impairs Trabecularization and Mechanical Strength of Bone
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23. Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome
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24. Retrotransposons spread potential cis-regulatory elements during mammary gland evolution
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25. Parallel Accelerated Evolution in Distant Hibernators Reveals Candidate Cis Elements and Genetic Circuits Regulating Mammalian Obesity
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26. EEF1D facilitates milk lipid synthesis by regulation of PI3K‐Akt signaling in mammals
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27. Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes
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28. Phylogenomics
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29. Short open reading frame genes in innate immunity: from discovery to characterization
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30. Sex differences in interindividual gene expression variability across human tissues
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31. Conserved Noncoding Elements Follow Power-Law-Like Distributions in Several Genomes as a Result of Genome Dynamics
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32. Identification of anHMGB3Frameshift Mutation in a Family With an X-linked Colobomatous Microphthalmia Syndrome Using Whole-Genome and X-Exome Sequencing
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33. Phylogenetic Gaussian Process Model for the Inference of Functionally Important Regions in Protein Tertiary Structures
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34. Temperature and length-dependent modulation of the MH class IIβ gene expression in brook charr (Salvelinus fontinalis) by a cis-acting minisatellite
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35. Genomic Landscape of Human, Bat, and Ex Vivo DNA Transposon Integrations
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36. Computational discovery of human coding and non-coding transcripts with conserved splice sites
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37. Studying the System-Level Involvement of MicroRNAs in Parkinson's Disease
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38. Understanding genome browsing
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39. cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data
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40. Poly(A) code analyses reveal key determinants for tissue-specific mRNA alternative polyadenylation
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41. Non-Coding Loss-of-Function Variation in Human Genomes
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42. Estimating the prevalence of functional exonic splice regulatory information
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43. The Molecular Revolution in Cutaneous Biology: EDC and Locus Control
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44. Systematic Identification and Molecular Characteristics of Long Noncoding RNAs in Pig Tissues
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45. The genome of the tegu lizard Salvator merianae: combining Illumina, PacBio, and optical mapping data to generate a highly contiguous assembly
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46. Significant Strain Variation in the Mutation Spectra of Inbred Laboratory Mice
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47. Genome-wide analysis of mRNAs and lncRNAs in Mycoplasma bovis infected and non-infected bovine mammary gland tissues
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48. Systematic identification of cis-regulatory variants that cause gene expression differences in a yeast cross
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49. Mechanistic insights into mutually exclusive splicing in dynamin 1
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50. Identification of Novel Drosophila melanogaster MicroRNAs
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51. FootPrinter3: phylogenetic footprinting in partially alignable sequences
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52. Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome
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53. The evolutionary history of human spindle genes includes back-and-forth gene flow with Neandertals
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54. The genomic distribution of transposable elements is driven by spatially variable purifying selection
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55. Genomic findings and their implications for the evolutionary social sciences
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56. RNALocate v3.0: Advancing the Repository of RNA Subcellular Localization with Dynamic Analysis and Prediction
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57. Whole-genome sequencing analysis identifies rare, large-effect noncoding variants and regulatory regions associated with circulating protein levels
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58. Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain
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59. Scale-invariant structure of strongly conserved sequence in genomic intersections and alignments
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60. Prevalence of Multinucleotide Replacements in Evolution of Primates and Drosophila
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61. An Examination of KCNE1 Mutations and Common Variants in Chronic Tinnitus
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62. Mammalian Alternative Translation Initiation Is Mostly Nonadaptive
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63. Learning the properties of adaptive regions with functional data analysis
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64. SegAlign: A Scalable GPU-Based Whole Genome Aligner
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65. Monoallelic and bi-allelic variants in NCDN cause neurodevelopmental delay, intellectual disability, and epilepsy
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66. Exploring Common Therapeutic Targets for Neurodegenerative Disorders Using Transcriptome Study
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67. Learning a genome-wide score of human–mouse conservation at the functional genomics level
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68. Toward comprehensive functional analysis of gene lists weighted by gene essentiality scores
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69. Functional Validation of Osteoporosis Genetic Findings Using Small Fish Models
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70. Microbiome-associated human genetic variants impact phenome-wide disease risk
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71. Changes in the Mucosa-Associated Microbiome and Transcriptome across Gut Segments Are Associated with Obesity in a Metabolic Syndrome Porcine Model
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72. The conservation of human functional variants and their effects across livestock species
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73. An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
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74. Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
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75. Flexibility of transcription factor target site position in conserved cis-regulatory modules
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76. Splicing predictions reliably classify different types of alternative splicing
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77. Application of high-throughput sequencing for studying genomic variations in congenital heart disease
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79. Disruption of promoter memory by synthesis of a long noncoding RNA
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80. Mitochondrial mutations in human cancer: Curation of translation
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81. RegulationSpotter: annotation and interpretation of extratranscriptic DNA variants
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82. Meta‐analysis of massively parallel reporter assays enables prediction of regulatory function across cell types
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83. In the presence of population structure: From genomics to candidate genes underlying local adaptation
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84. Comparative Genomic Analysis Using the UCSC Genome Browser
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85. Using computational simulations to quantify genetic load and predict extinction risk
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86. RMVar 2.0: an updated database of functional variants in RNA modifications
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87. Genomic tools in acute myeloid leukemia: From the bench to the bedside
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88. A two-step site and mRNA-level model for predicting microRNA targets
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89. Rare, Potentially Pathogenic Variants in ZNF469 Are Not Enriched in Keratoconus in a Large Australian Cohort of European Descent
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90. Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation
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91. Strategies for the Identification of Bioactive Neuropeptides in Vertebrates
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92. Independent Transposon Exaptation Is a Widespread Mechanism of Redundant Enhancer Evolution in the Mammalian Genome
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93. Non-coding de novo mutations in chromatin interactions are implicated in autism spectrum disorder
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95. The Analysis of ChIP-Seq Data
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96. Identification and characterization of long intergenic non-coding RNAs related to mouse liver development
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97. Selective Genomic Targeting by FRA-2/FOSL2 Transcription Factor
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98. Clustering of DNA words and biological function: A proof of principle
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99. Deletion of a conserved noncoding sequence in Plzf intron leads to Plzf down‐regulation in limb bud and polydactyly in the rat
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100. Algebraic Distribution of Segmental Duplication Lengths in Whole-Genome Sequence Self-Alignments
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