Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

Cited by (4,071)

Items 1,501–1,600 of 4,071

1. Characterization of long non-coding RNA transcriptome in high-energy diet induced nonalcoholic steatohepatitis minipigs
   Ji‐Han Xia, Leilei Xin, Wenjuan Zhu, Li Li, Chenxiao Li, Yanfang Wang, Yulian Mu, Shulin Yang, Kui Li · 2016 · Scientific Reports
2. Multiple myeloma risk variant at 7p15.3 creates an IRF4-binding site and interferes with CDCA7L expression
   Ni Li, David C. Johnson, Niels Weinhold, James B. Studd, Giulia Orlando, Fabio Mirabella, Jonathan S. Mitchell, Tobias Meißner, Martin Kaiser, Hartmut Goldschmidt et al. · 2016 · Nature Communications
3. Genome-wide analysis of long noncoding RNA profiling in PRRSV-infected PAM cells by RNA sequencing
   Jing Zhang, Pu Sun, Lipeng Gan, Weijie Bai, Zhijia Wang, Dong Li, Yimei Cao, Yuanfang Fu, Pinghua Li, Xingwen Bai et al. · 2017 · Scientific Reports
4. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor
   Pau Puigdevall, Robert Castelo · 2018 · Bioinformatics
5. Striking circadian neuron diversity and cycling of Drosophila alternative splicing
   Qingqing Wang, Katharine Compton Abruzzi, Michael Rosbash, Donald C. Rio · 2018 · eLife
6. Phylogenomic Reconstruction of the Neotropical Poison Frogs (Dendrobatidae) and Their Conservation
   Wilson X. Guillory, Morgan R. Muell, Kyle Summers, Jason Lee Brown · 2019 · Diversity
7. Unmasking Retinitis Pigmentosa complex cases by a whole genome sequencing algorithm based on open-access tools: hidden recessive inheritance and potential oligogenic variants
   María González‐del Pozo, Elena Fernández-Suárez, Marta Martín-Sánchez, Nereida Bravo‐Gil, Cristina Méndez‐Vidal, Enrique Rodríguez-de-la-Rúa-Franch, Salud Borrego, Guillermo Antiñolo · 2020 · Journal of Translational Medicine
8. CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome
   Mark F. Rogers, Tom R. Gaunt, Colin Campbell · 2020 · Bioinformatics
9. PredCID: prediction of driver frameshift indels in human cancer
   Zhenyu Yue, Xinlu Chu, Junfeng Xia · 2020 · Briefings in Bioinformatics
10. Integrated genomic analysis reveals key features of long undecoded transcript isoform-based gene repression
    Amy M Tresenrider, Kaitlin Morse, Victoria Jorgensen, Minghao Chia, Hanna Liao, Folkert Jacobus van Werven, Elçin Ünal · 2021 · Molecular Cell
11. A comparison on predicting functional impact of genomic variants
    Dong Wang, Jie Li, Yadong Wang, Edwin Wang · 2022 · NAR Genomics and Bioinformatics
12. Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities
    Roberta Esposito, Taisia Polidori, Dominik F. Meise, Carlos Pulido-Quetglas, Panagiotis Chouvardas, Stefan Forster, Paulina Schaerer, Andrea Kobel, Juliette Schlatter, Erik Kerkhof et al. · 2022 · Cell Genomics
13. Intronic small nucleolar RNAs regulate host gene splicing through base pairing with their adjacent intronic sequences
    Danny Bergeron, Laurence Faucher‐Giguère, Ann‐Kathrin Emmerichs, Karine Choquet, Kristina Sungeun Song, Gabrielle Deschamps-Francoeur, Étienne Fafard-Couture, Andrea Rivera, Sonia Couture, L. Stirling Churchman et al. · 2023 · Genome biology
14. Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem
    Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette · 2007 · Journal of Computational Biology
15. A missense founder mutation in VLDLR is associated with Dysequilibrium Syndrome without quadrupedal locomotion
    Bassam R. Ali, Jennifer L. Silhavy, Matthew J Gleeson, Joseph G. Gleeson, Lihadh Al‐Gazali · 2012 · BMC Medical Genetics
16. Functional single nucleotide polymorphism-based association studies
    Victoria E. H. Carlton, James S. Ireland, Francisco Useche, Malek Faham · 2006 · Human Genomics
17. Importin-13 genetic variation is associated with improved airway responsiveness in childhood asthma
    Benjamin A. Raby, Kristel Van Steen, Jessica Ann Lasky-Su, Kelan G. Tantisira, Feige Kaplan, Scott T. Weiss · 2009 · Respiratory Research
18. Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes
    Hongkai Ji, Wing Hung Wong · 2006 · Biometrics
19. Identifying mRNA sequence elements for target recognition by human Argonaute proteins
    Jingjing Li, Taehyung P. Kim, Razvan Nutiu, Debashish Ray, Timothy R. Hughes, Zhaolei Zhang · 2014 · Genome Research
20. Improved definition of the mouse transcriptome via targeted RNA sequencing
    Giovanni Bussotti, Tommaso Leonardi, Michael B. Clark, Tim R. Mercer, Joanna Crawford, Lorenzo Malquori, Cédric Notredame, Marcel E. Dinger, John S. Mattick, Anton James Enright · 2016 · Genome Research
21. Inferring and perturbing cell fate regulomes in human cerebral organoids
    Jonas Simon Fleck, Sophie Martina Johanna Jansen, Damian Wollny, Makiko Seimiya, Fides Lea Zenk, Małgorzata Santel, Zhisong He, J. Gray Camp, Barbara Treutlein · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
22. A chromosome-level reference genome and pangenome for barn swallow population genomics
    Simona Secomandi, Guido Roberto Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Ann L. Abueg, Jennifer Balacco, Manuela Caprioli, William Chow, Claúdio Ciofi et al. · 2023 · Cell Reports
23. Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation
    Pingzhu Zhou, Nathan J. VanDusen, Yanchun Zhang, Yangpo Cao, Isha Sethi, Rong Hu, Shuo Zhang, Guangyu Wang, Lincai Ye, Neil Mazumdar et al. · 2023 · Developmental Cell
24. Developing an Evolutionary Baseline Model for Humans: Jointly Inferring Purifying Selection with Population History
    Parul Johri, Susanne P. Pfeifer, Jeffrey D. Jensen · 2023 · Molecular Biology and Evolution
25. Long-read sequencing for 29 immune cell subsets reveals disease-linked isoforms
    Jun Inamo, Akari Suzuki, Mahoko Takahashi Ueda, Kensuke Yamaguchi, Hiroshi Nishida, Katsuya Suzuki, Yuko Kaneko, Tsutomu Takeuchi, Hiroaki Hatano, Kazuyoshi Ishigaki et al. · 2024 · Nature Communications
26. An atlas of transcribed enhancers across helper T cell diversity for decoding human diseases
    Akiko Oguchi, Akari Suzuki, Shuichiro Komatsu, Hiroyuki Yoshitomi, Shruti Bhagat, Raku Son, Raoul J.P. Bonnal, Shohei Kojima, Masaru Koido, Kazuhiro Takeuchi et al. · 2024 · Science
27. Whole-genome sequencing in 333,100 individuals reveals rare non-coding single variant and aggregate associations with height
    Gareth Hawkes, Robin N. Beaumont, Zilin Li, Ravi Mandla, Xihao Li, Christine M. Albert, Donna K. Arnett, Allison E. Ashley‐Koch, Aneel A. Ashrani, Kathleen C. Barnes et al. · 2024 · Nature Communications
28. Splicing accuracy varies across human introns, tissues, age and disease
    Sonia García-Ruiz, D. Zhang, Emil Karl Gustavsson, G Rocamora-Perez, Melissa Grant‐Peters, Aine Fairbrother-Browne, Regina Hertfelder Reynolds, Jonathan Brenton, Ana Luisa Gil-Martínez, Zhongbo Chen et al. · 2025 · Nature Communications
29. Novel Low Abundance and Transient RNAs in Yeast Revealed by Tiling Microarrays and Ultra High–Throughput Sequencing Are Not Conserved Across Closely Related Yeast Species
    Albert Lee, Kasper D. Hansen, James H. Bullard, Sandrine Dudoit, Gavin J. Sherlock · 2008 · PLoS Genetics
30. The Enhancer Landscape during Early Neocortical Development Reveals Patterns of Dense Regulation and Co-option
    Aaron M. Wenger, Shoa L. Clarke, James H. Notwell, Tisha R. Chung, Geetu Tuteja, Harendra Guturu, Bruce T. Schaar, Gill Bejerano · 2013 · PLoS Genetics
31. NRG3 gene is associated with the risk and age at onset of Alzheimer disease
    Ke-Sheng Wang, Nuo Xu, Liang Wang, Lorenzo Aragón, Radu Ciubuc, Tania Bedard Arana, Chun-Xiang Mao, L. Petty, D. Briones, Brenda Bin Su et al. · 2014 · Journal of neural transmission
32. A genome-wide view of mutation rate co-variation using multivariate analyses
    Guruprasad Ananda, Francesca Chiaromonte, Kateryna D. Makova · 2011 · Genome biology
33. Deep Resequencing Unveils Genetic Architecture of ADIPOQ and Identifies a Novel Low-Frequency Variant Strongly Associated With Adiponectin Variation
    Liling L. Warren, Li Li, Matthew R. Nelson, Margaret G. Ehm, Judong Shen, Dana J. Fraser, Jennifer L. Aponte, Keith Nangle, Andrew J. Slater, Peter M. Woollard et al. · 2012 · Diabetes
34. A yeast one‐hybrid and microfluidics‐based pipeline to map mammalian gene regulatory networks
    Carine Gubelmann, Sebastian M. Waszak, Alina Isakova, Wiebke Holcombe, Korneel Hens, Antonina Hafner, Jean‐Daniel Feuz, Sunil K. Raghav, Jovan Simicevic, Bart Deplancke · 2013 · Molecular Systems Biology
35. Localizing and Classifying Adaptive Targets with Trend Filtered Regression
    Mehreen R. Mughal, Michael DeGiorgio · 2018 · Molecular Biology and Evolution
36. Challenges in the diagnosis and discovery of rare genetic disorders using contemporary sequencing technologies
    Eleanor G. Seaby, Sarah Ennis · 2020 · Briefings in Functional Genomics
37. AI-Driver: an ensemble method for identifying driver mutations in personal cancer genomes
    Haoxuan Wang, Tao Wang, Xiaolu Zhao, Honghu Wu, Mingcong You, Zhong Sheng Sun, Fengbiao Mao · 2020 · NAR Genomics and Bioinformatics
38. Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin
    Irene M. Kaplow, Daniel E. Schäffer, Morgan E. Wirthlin, Alyssa J. Lawler, Ashley R. Brown, Michael Kleyman, Andreas R. Pfenning · 2022 · BMC Genomics
39. Expression and Potential Biomarkers of Regulators for M7G RNA Modification in Gliomas
    Zhen Bouman Chen, Zhe Zhang, Wei Ding, Jie-hui Zhang, Zilong Tan, Yuran Mei, Wei He, Xiaojing Wang · 2022 · Frontiers in Neurology
40. VILIP-1 Downregulation in Non-Small Cell Lung Carcinomas: Mechanisms and Prediction of Survival
    Jian Fu, Kathryn Fong, Alfonso Bellacosa, Eric A. Ross, Sinoula Apostolou, Daniela Bassi, Fang Jin, Jirong Zhang, Paul Cairns, Inmaculada Ibañez de Cáceres et al. · 2008 · PLoS ONE
41. Combining statistical alignment and phylogenetic footprinting to detect regulatory elements
    Rahul Satija, Lior S. Pachter, Jotun Hein · 2008 · Bioinformatics
42. New Approaches to Phylogenetic Tree Search and Their Application to Large Numbers of Protein Alignments
    Simon Whelan · 2007 · Systematic Biology
43. A novel amyotrophic lateral sclerosis mutation in OPTN induces ER stress and Golgi fragmentation in vitro
    Jennifer A. Fifita, Kelly L. Williams, Vinod Sundaramoorthy, Emily P. McCann, Garth A. Nicholson, Julie D. Atkin, Ian P. Blair · 2016 · Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration
44. Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function
    Yili Chen, Thomas W. Blackwell, Ji Chen, Jing Gao, Angel W. Lee, David J. States · 2007 · PLoS Computational Biology
45. Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites
    George A. Follows, Pawan Dhami, Berthold Göttgens, Alexander W. Bruce, Peter J. Campbell, Shane C. Dillon, Aileen M. Smith, Christoph M. Koch, Ian J. Donaldson, Mike A. Scott et al. · 2006 · Genome Research
46. Large-scale genomics unveil polygenic architecture of human cortical surface area
    Chi‐Hua Chen, Qian Peng, Andrew Joseph Schork, Min‐Tzu Lo, Chun-Chieh Fan, Yunpeng Wang, Rahul S. Desikan, Francesco Bettella, Donald J. Hagler, Pediatric Imaging, Neurocognition and Genetics Study et al. · 2015 · Nature Communications
47. Identification of a Nonsynonymous Polymorphism in the SVEP1 Gene Associated With Altered Clinical Outcomes in Septic Shock*
    Taka‐aki Nakada, James A. Russell, John H. Boyd, Simone A. Thair, Keith R. Walley · 2014 · Critical Care Medicine
48. Comprehensive characterization of erythroid-specific enhancers in the genomic regions of human Krüppel-like factors
    Qian Xiong, Zhaojun Zhang, Kai‐Hsin Chang, Hongzhu Qu, Hai Wang, Heyuan Qi, Yajuan Li, Xiuyan Ruan, Yaran Yang, Yadong Yang et al. · 2013 · BMC Genomics
49. C/EBPβ regulates dexamethasone‐induced muscle cell atrophy and expression of atrogin‐1 and MuRF1
    PATRICIA A. GONNELLA, Nima Alamdari, Steven Tizio, Zaira Aversa, Victoria Petkova, Per‐Olof Hasselgren · 2011 · Journal of Cellular Biochemistry
50. Nuclear RNA Sequencing of the Mouse Erythroid Cell Transcriptome
    Jennifer A. Mitchell, Ieuan Clay, David Umlauf, Chih‐Yu Chen, Catherine A. Moir, Christopher H. Eskiw, Stefan Schoenfelder, Lyubomira Chakalova, Takashi Nagano, Peter Fraser · 2012 · PLoS ONE
51. The 9p21.3 risk of childhood acute lymphoblastic leukaemia is explained by a rare high-impact variant in CDKN2A
    Jayaram Vijayakrishnan, Marc Henrion, Anthony V. Moorman, Bettina Fiege, Rajiv Kumar, Miguel Inácio da Silva Filho, Amy Holroyd, Rolf Koehler, Hauke Thomsen, Julie A. E. Irving et al. · 2015 · Scientific Reports
52. Identification of direct regulatory targets of the transcription factor Sox10 based on function and conservation
    Kyung Sang Lee, Seungyoon Nam, Eun-ah Cho, Ikjoo Seong, Jin-Kyung Limb, Sanghyuk Lee, Jaesang Kim · 2008 · BMC Genomics
53. BALR-6 regulates cell growth and cell survival in B-lymphoblastic leukemia
    Norma Iris Rodriguez-Malave, Thilini R. Fernando, Parth C. Patel, Jorge R. Contreras, Jayanth Kumar Palanichamy, Tiffany M. Tran, Jaime Anguiano, Michael J. Davoren, Michael O. Alberti, KimAnh Trang Pioli et al. · 2015 · Molecular Cancer
54. Identification and preliminary characterization of chemosensory perception-associated proteins in the melon fly Bactrocera cucurbitae using RNA-seq
    Samia Elfékih, Chien‐Yu Chen, Ju‐Chun Hsu, Mahdi Belcaid, David S. Haymer · 2016 · Scientific Reports
55. Chromatin structure–based prediction of recurrent noncoding mutations in cancer
    Kwoneel Kim, Kiwon Jang, Woojin Yang, Eun-Young Choi, Seong-Min Park, Mingyun Bae, Youn‐Jae Kim, Jung Kyoon Choi · 2016 · Nature Genetics
56. The spectrum of genetic variants in hereditary pancreatic cancer includes Fanconi anemia genes
    Thomas Paul Slavin, Susan L. Neuhausen, Bita Nehoray, Mariana Niell‐Swiller, Ilana B. Solomon, Christina Rybak, Kathleen Reilly Blazer, Aaron W. Adamson, Kai Yang, Sharon R. Sand et al. · 2017 · Familial Cancer
57. The asymmetrically segregating lncRNA cherub is required for transforming stem cells into malignant cells
    Lisa Landskron, Victoria Steinmann, François Bonnay, Thomas Rainer Burkard, Jonas Steinmann, Ilka Reichardt, Heike Harzer, Anne-Sophie Laurenson, Heinrich Reichert, Juergen A. Knoblich · 2018 · eLife
58. Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish
    Wen Chen, Xuan Zhang, Jing Li, Shulan Huang, Shuanglin Xiang, Xiang Hu, Changning Liu · 2018 · BMC Genomics
59. Widespread enhancer activation via ERα mediates estrogen response in vivo during uterine development
    Wendy N. Jefferson, Harriet Karimi Kinyamu, Tianyuan Wang, Adam X. Miranda, Elizabeth Padilla‐Banks, Alisa A. Suen, Carmen J. Williams · 2018 · Nucleic Acids Research
60. Genome-wide differential expression of long noncoding RNAs and mRNAs in ovarian follicles of two different chicken breeds
    Yongdong Peng, Chang Li, Yaqi Wang, Ruining Wang, Lulu Hu, Ziya Zhao, Liying Geng, Zhengzhu Liu, Yuanfang Gong, Jingshi Li et al. · 2018 · Genomics
61. ncRNA Editing: Functional Characterization and Computational Resources
    Giovanni Nigita, Gioacchino P. Marceca, Luisa Tomasello, Rosario Distefano, Federica Calore, Dario Veneziano, Giulia Romano, Serge Patrick Nana-Sinkam, Mario Acunzo, Carlo Maria Croce · 2019 · Methods in molecular biology
62. Competition among Aedes aegypti larvae
    Kurt Steinwascher · 2018 · PLoS ONE
63. GenePy - a score for estimating gene pathogenicity in individuals using next-generation sequencing data
    Enrico Mossotto, James John Ashton, Luke O’Gorman, Reuben J. Pengelly, R Mark Beattie, Ben D. MacArthur, Sarah Ennis · 2019 · BMC Bioinformatics
64. Open chromatin in grapevine marks candidate CREs and with other chromatin features correlates with gene expression
    Rachel M. Schwope, Gabriele Magris, Mara Miculan, Eleonora Paparelli, Mirko Celii, Aldo Tocci, Fabio Marroni, Alice Fornasiero, Emanuele De Paoli, Michele Morgante · 2021 · The Plant Journal
65. Circular RNA repertoires are associated with evolutionarily young transposable elements
    Franziska Gruhl, Peggy Janich, Henrik Kaessmann, David Gatfield · 2021 · eLife
66. Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia
    Jia Wen, Brett Trost, Worrawat Engchuan, Matthew Halvorsen, Linda M. Pallotto, Aleksandra Mitina, NaEshia Ancalade, Martilias S. Farrell, Ian Backstrom, Keyi Guo et al. · 2022 · Molecular Psychiatry
67. Methods to Detect Selection on Noncoding DNA
    Ying Zhen, Peter Andolfatto · 2012 · Methods in molecular biology
68. Identification of an ancient Bmp4 mesoderm enhancer located 46 kb from the promoter
    Kelly J. Chandler, Ronald L. Chandler, Douglas P. Mortlock · 2009 · Developmental Biology
69. Modeling an Evolutionary Conserved Circadian Cis-Element
    Éric R. Paquet, Guillaume Rey, Félix Naef · 2005 · PLoS Computational Biology
70. Use of comparative genomics approaches to characterize interspecies differences in response to environmental chemicals: Challenges, opportunities, and research needs
    Sarah L. Burgess-Herbert, Susan Y. Euling · 2011 · Toxicology and Applied Pharmacology
71. Transposable element derived DNaseI-hypersensitive sites in the human genome.
    Leonardo Mariño‐Ramírez, I. King Jordan · 2006 · Biology Direct
72. CisView: A Browser and Database of cis-regulatory Modules Predicted in the Mouse Genome
    Alexei A. Sharov, Dawood Babu Dudekula, Minoru S.H. Ko · 2006 · DNA Research
73. IDIOPATHIC PULMONARY FIBROSIS IS A COMPLEX GENETIC DISORDER.
    David A. Schwartz · 2016 · PubMed Central
74. Implementing precision cancer medicine in the genomic era
    Hui‐Zi Chen, Russell Bonneville, Sameek Roychowdhury · 2018 · Seminars in Cancer Biology
75. The UCSC Genome Browser
    Donna Karolchik, Angie S. Hinrichs, William James Kent · 2007 · Current Protocols in Bioinformatics
76. A 3′ Enhancer Controls Snail Expression in Melanoma Cells
    Matthew B. Palmer, Parimal Majumder, Myesha R. Green, Paul A. Wade, Jeremy M. Boss · 2007 · Cancer Research
77. Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs
    Phuc‐Loi Luu, Hans Robert Schöler, Marcos Jesus Araúzo-Bravo · 2013 · Genome Research
78. Estimation of allele-specific fitness effects across human protein-coding sequences and implications for disease
    Yi-Fei Huang, Adam C. Siepel · 2019 · Genome Research
79. Untitled work
    Graybuck · 2019 · 10.1101/525014
80. Selection on the Protein-Coding Genome
    Carolin Kosiol, Maria O. Anisimova · 2012 · Methods in molecular biology
81. MAGPIE: accurate pathogenic prediction for multiple variant types using machine learning approach
    Yicheng Liu, Tianyun Zhang, Ningyuan You, Sai Wu, Ning Shen · 2024 · Genome Medicine
82. Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification
    Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown et al. · 2024 · Nature Genetics
83. Comparative Analysis of Human Protein-Coding and Noncoding RNAs between Brain and 10 Mixed Cell Lines by RNA-Seq
    Geng Chen, Kangping Yin, Leming M. Shi, Yuanzhang Fang, Ya Qi, Peng Li, Jian Luo, Bing He, Mingyao Liu, Tieliu Shi · 2011 · PLoS ONE
84. Toward a Systematic Understanding of mRNA 3′ Untranslated Regions
    Wenxue Zhao, Denitza Blagev, Joshua L. Pollack, David J. Erle · 2011 · Proceedings of the American Thoracic Society
85. RNA-seq identified a super-long intergenic transcript functioning in adipogenesis
    Yi Fan, Feng Yang, Xiao Liu, Hongbo Chen, Ting Ji, Lixiang Jiang, Xiaoxia Wang, Zhangping Yang, Lihe Zhang, Xianfeng Ding et al. · 2013 · RNA Biology
86. Transcriptional regulation by miRNA mimics that target sequences downstream of gene termini
    Scott T. Younger, David R. Corey · 2011 · Molecular BioSystems
87. Linking the Epigenome to the Genome: Correlation of Different Features to DNA Methylation of CpG Islands
    Clemens Wrzodek, Finja Büchel, Georg Hinselmann, Johannes Eichner, Florian Mittag, Andreas Zell · 2012 · PLoS ONE
88. Primate phylogenomics: developing numerous nuclear non-coding, non-repetitive markers for ecological and phylogenetic applications and analysis of evolutionary rate variation
    Zuogang Peng, Navin Elango, Derek E. Wildman, Soojin V. Yi · 2009 · BMC Genomics
89. Measuring Microsatellite Conservation in Mammalian Evolution with a Phylogenetic Birth–Death Model
    Sterling M. Sawaya, Dustin Lennon, Emmanuel Buschiazzo, Neil J. Gemmell, Vladimir N. Minin · 2012 · Genome Biology and Evolution
90. The role of the interactome in the maintenance of deleterious variability in human populations
    Luz García‐Alonso, Jorge Jimenez-Almazán, José Carbonell‐Caballero, Alicia Vela‐Boza, Javier Santoyo‐López, Guillermo Antiñolo, Joaquı́n Dopazo · 2014 · Molecular Systems Biology
91. Ciliary dyslexia candidate genes DYX1C1 and DCDC2 are regulated by Regulatory Factor X (RFX) transcription factors through X‐box promoter motifs
    Kristiina Tammimies, Andrea Bieder, Gilbert Lauter, Debora Sugiaman‐Trapman, Rachel Torchet, Marie‐Estelle Hokkanen, Jan Burghoorn, Eero Ċastrén, Juha Kere, Isabel Tapia‐Páez et al. · 2016 · The FASEB Journal
92. Antisense transcription of the myotonic dystrophy locus yields low-abundant RNAs with and without (CAG)n repeat
    Anke E. E. G. Gudde, Simon J. van Heeringen, Amanda I. De Oude, Ingeborg D.G. van Kessel, Joseph Estabrook, Eric T. Wang, Bé Wieringa, Derick G. Wansink · 2017 · RNA Biology
93. Variant Ranker: a web-tool to rank genomic data according to functional significance
    John Alexander, Dimitris Mantzaris, Marianthi Georgitsi, Petros Drineas B, Peristera Paschou · 2017 · BMC Bioinformatics
94. A neural network based model effectively predicts enhancers from clinical ATAC-seq samples
    Asa Thibodeau, Asli Uyar, Shubham Khetan, Michael L. Stitzel, Duygu Ucar · 2018 · Scientific Reports
95. Exploration of CTCF post-translation modifications uncovers Serine-224 phosphorylation by PLK1 at pericentric regions during the G2/M transition
    Brian C. Del Rosario, Andrea J. Kriz, Amanda M. Del Rosario, Anthony N. Anselmo, Christopher J. Fry, Forest M. White, Ruslan I. Sadreyev, Jeannie T. Lee · 2019 · eLife
96. Predicting the spatial dynamics of Wolbachia infections in Aedes aegypti arbovirus vector populations in heterogeneous landscapes
    Penelope A. Hancock, Scott A. Ritchie, Constantianus J. M. Koenraadt, Thomas W. Scott, Ary A. Hoffmann, H. Charles J. Godfray · 2019 · Journal of Applied Ecology
97. Life-Threatening Influenza, Hemophagocytic Lymphohistiocytosis and Probable Vaccine-Strain Varicella in a Novel Case of Homozygous STAT2 Deficiency
    Bishara J. Freij, Aidan T. Hanrath, Rui Chen, Sophie Hambleton, Christopher James Arthur Duncan · 2021 · Frontiers in Immunology
98. A conserved role for the ALS-linked splicing factor SFPQ in repression of pathogenic cryptic last exons
    Patricia M. Gordon, Fursham Hamid, Eugene V. Makeyev, Corinne Houart · 2021 · Nature Communications
99. Differential usage of transcriptional repressor Zeb2 enhancers distinguishes adult and embryonic hematopoiesis
    Xiao Huang, Stephen T. Ferris, Sun Kyung Kim, Mayank N. K. Choudhary, Julia A. Belk, Changxu Fan, Yanyan Qi, Raki Sudan, Yu Xia, Pritesh Desai et al. · 2021 · Immunity
100. Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome
     Mehran Karimzadeh, Michael M. Hoffman · 2022 · Genome biology