Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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8. SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes
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9. Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development
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14. Fine-scale variation in microclimate across an urban landscape shapes variation in mosquito population dynamics and the potential of Aedes albopictus to transmit arboviral disease
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15. Genome-Wide Profiling of p63 DNA–Binding Sites Identifies an Element that Regulates Gene Expression during Limb Development in the 7q21 SHFM1 Locus
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22. Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution
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23. Dynamic reprogramming of chromatin accessibility during Drosophilaembryo development
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27. Toward an Evolutionarily Appropriate Null Model: Jointly Inferring Demography and Purifying Selection
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31. Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up
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32. The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
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33. A Complex Genomic Rearrangement Involving the Endothelin 3 Locus Causes Dermal Hyperpigmentation in the Chicken
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34. The helicase Ded1p controls use of near-cognate translation initiation codons in 5′ UTRs
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35. Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes
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36. MicroRNAs Cooperatively Inhibit a Network of Tumor Suppressor Genes to Promote Pancreatic Tumor Growth and Progression
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37. Dynamic changes in histone-methylation 'marks' across the locus encoding interferon-γ during the differentiation of T helper type 2 cells
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39. Discovery and Annotation of Functional Chromatin Signatures in the Human Genome
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41. RNA editing in nascent RNA affects pre-mRNA splicing
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42. FLAGS, frequently mutated genes in public exomes
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43. miR-1, miR-10b, miR-155, and miR-191 are novel regulators of BDNF
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44. Improved pathogenicity prediction for rare human missense variants
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46. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system
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48. Analyses of Long Non-Coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium
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49. Single-cell genomics and regulatory networks for 388 human brains
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50. Immediate and deferred epigenomic signatures of in vivo neuronal activation in mouse hippocampus
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53. Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress
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54. Multi-species annotation of transcriptome and chromatin structure in domesticated animals
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55. LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property
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56. Genomics of Long-Range Regulatory Elements
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57. Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups
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58. ERα is an RNA-binding protein sustaining tumor cell survival and drug resistance
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59. Translation of Small Open Reading Frames within Unannotated RNA Transcripts in Saccharomyces cerevisiae
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60. Population genomics of P acific lamprey: adaptive variation in a highly dispersive species
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61. Comparative genomics and the study of evolution by natural selection
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62. eXtasy: variant prioritization by genomic data fusion
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64. Flicr , a long noncoding RNA, modulates Foxp3 expression and autoimmunity
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65. Functional architecture of low-frequency variants highlights strength of negative selection across coding and non-coding annotations
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69. Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression
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70. Direct Response to Notch Activation: Signaling Crosstalk and Incoherent Logic
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71. The impact of proinflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabetes
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72. Genomic Perspectives of Transcriptional Regulation in Forebrain Development
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73. Integrating Diverse Datasets Improves Developmental Enhancer Prediction
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74. Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype
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76. SIFT Indel: Predictions for the Functional Effects of Amino Acid Insertions/Deletions in Proteins
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77. Mutations in IFT172 cause isolated retinal degeneration and Bardet–Biedl syndrome
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78. Family-based association of FKBP5 in bipolar disorder
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79. Widespread intronic polyadenylation diversifies immune cell transcriptomes
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80. 3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes
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81. Reliable prediction of regulator targets using 12 Drosophila genomes
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82. DNA language models are powerful predictors of genome-wide variant effects
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83. Gene‐specific criteria for PTEN variant curation: Recommendations from the ClinGen PTEN Expert Panel
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84. A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
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85. Point-of-care whole-exome sequencing of idiopathic male infertility
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86. Evolutionary dynamics of transposable elements in the short-tailed opossum <i>Monodelphis domestica</i>
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89. Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites
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90. Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of Protocadherin-α gene expression
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91. Epigenetic Changes in the Hypothalamic Proopiomelanocortin and Glucocorticoid Receptor Genes in the Ovine Fetus after Periconceptional Undernutrition
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92. Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome
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93. Human-specific genetics: new tools to explore the molecular and cellular basis of human evolution
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94. Identification of Cadherin 2 ( CDH2 ) Mutations in Arrhythmogenic Right Ventricular Cardiomyopathy
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95. De Novo Mutation in Genes Regulating Neural Stem Cell Fate in Human Congenital Hydrocephalus
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96. A high-resolution map of human RNA translation
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97. The transcription factor p53: Not a repressor, solely an activator.
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99. Extensive conservation of ancient microsynteny across metazoans due to <i>cis</i> -regulatory constraints
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100. What fraction of the human genome is functional?
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