Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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3. Regulation by 3′-Untranslated Regions
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4. Evolution of the mammalian transcription factor binding repertoire via transposable elements
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9. SRSF2 Mutations Contribute to Myelodysplasia by Mutant-Specific Effects on Exon Recognition
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11. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
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14. Unsupervised pattern discovery in human chromatin structure through genomic segmentation
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16. Novel Crohn Disease Locus Identified by Genome-Wide Association Maps to a Gene Desert on 5p13.1 and Modulates Expression of PTGER4
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17. Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice
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18. Cooperative Binding of Transcription Factors Orchestrates Reprogramming
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20. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
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23. A common genetic variant in the NOS1 regulator NOS1AP modulates cardiac repolarization
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25. Metabolic modeling of single Th17 cells reveals regulators of autoimmunity
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30. Forces shaping the fastest evolving regions in the human genome
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31. How to usefully compare homologous plant genes and chromosomes as DNA sequences
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32. Identification and Classification of Conserved RNA Secondary Structures in the Human Genome
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33. Competition between DNA methylation and transcription factors determines binding of NRF1
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34. Recent and ongoing selection in the human genome
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35. A distal enhancer and an ultraconserved exon are derived from a novel retroposon
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36. Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics
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37. Widespread contribution of transposable elements to the innovation of gene regulatory networks
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39. Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations
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40. An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia
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41. Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
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43. Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver
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44. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
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47. Whole-Genome Cartography of Estrogen Receptor α Binding Sites
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48. Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations
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50. Tumor-suppressor genes that escape from X-inactivation contribute to cancer sex bias
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52. Mutations in the mechanotransduction protein PIEZO1 are associated with hereditary xerocytosis
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59. Using high-resolution variant frequencies to empower clinical genome interpretation
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60. Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
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63. Nrf2–MafG heterodimers contribute globally to antioxidant and metabolic networks
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66. ChIP-Seq identification of weakly conserved heart enhancers
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68. YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
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71. Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change
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72. Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis
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74. Combinatorial binding predicts spatio-temporal cis-regulatory activity
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75. Unsupervised pattern discovery in human chromatin structure through genomic segmentation
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77. Repetitive Sequences in Complex Genomes: Structure and Evolution
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78. TiGER: A database for tissue-specific gene expression and regulation
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79. College of American Pathologists' Laboratory Standards for Next-Generation Sequencing Clinical Tests
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80. A Combinatorial Code for CPE-Mediated Translational Control
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83. Genome-wide patterns and properties of de novo mutations in humans
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84. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
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85. Identifying novel constrained elements by exploiting biased substitution patterns
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86. A cross-disorder dosage sensitivity map of the human genome
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87. Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian Development
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89. Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain
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90. Initial sequence and comparative analysis of the cat genome
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91. STATs Shape the Active Enhancer Landscape of T Cell Populations
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92. Human-Specific Gain of Function in a Developmental Enhancer
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93. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
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94. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs
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97. Origin and Evolution of Human microRNAs From Transposable Elements
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98. Tiny RNAs associated with transcription start sites in animals
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99. Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense?
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100. C2H2 zinc finger proteins greatly expand the human regulatory lexicon
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