Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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Items 601–700 of 4,072

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7. Analyses of mRNA structure dynamics identify embryonic gene regulatory programs
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14. ADCY5 -related dyskinesia
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18. Analysis of microRNAs and their precursors in bovine early embryonic development
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19. Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection
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20. Leveraging base-pair mammalian constraint to understand genetic variation and human disease
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21. Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines
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23. Genomic language models: opportunities and challenges
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24. Functional coordination of alternative splicing in the mammalian central nervous system
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25. Three-dimensional genome rewiring in loci with human accelerated regions
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26. Predicting the effects of frameshifting indels
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27. m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human
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28. Evaluating Pathogenicity of Rare Variants From Dilated Cardiomyopathy in the Exome Era
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29. Splice site strength–dependent activity and genetic buffering by poly-G runs
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30. Hierarchical Map of Orthologous Genomic Regions Reconstructed from Two Closely Related Genomes: Cucumber Case Study
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31. Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
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32. Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock
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33. A DNA language model based on multispecies alignment predicts the effects of genome-wide variants
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34. Metagenomics of the Human Body
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35. A computational pipeline for comparative ChIP-seq analyses
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36. Identification of novel FMR1 variants by massively parallel sequencing in developmentally delayed males
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37. Genome-wide prediction of transcription factor binding sites using an integrated model
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38. FGFR2 variants and breast cancer risk: fine-scale mapping using African American studies and analysis of chromatin conformation
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39. Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing
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40. Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
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41. Cross-species analysis of enhancer logic using deep learning
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42. The transcription factor PITX3 is associated with sporadic Parkinson's disease
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43. Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
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44. Methods for distinguishing between protein-coding and long noncoding RNAs and the elusive biological purpose of translation of long noncoding RNAs
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45. The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects
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46. Conserved and divergent gene regulatory programs of the mammalian neocortex
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47. A Core Paired-Type and POU Homeodomain-Containing Transcription Factor Program Drives Retinal Bipolar Cell Gene Expression
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48. Regulation of alternative splicing by the circadian clock and food related cues
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49. Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
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50. Massively parallel discovery of human-specific substitutions that alter enhancer activity
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51. A foundational large language model for edible plant genomes
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52. Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding
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54. A kinetic map of the homomeric voltage-gated potassium channel (Kv) family
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55. m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome
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56. Insights on variant analysis in silico tools for pathogenicity prediction
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57. Heterozygous Mutations Causing Partial Prohormone Convertase 1 Deficiency Contribute to Human Obesity
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58. Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast
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59. Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
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60. The sufficient minimal set of miRNA seed types
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61. Exome Sequencing and Genome-Wide Linkage Analysis in 17 Families Illustrate the Complex Contribution of TTN Truncating Variants to Dilated Cardiomyopathy
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62. Revisiting sORFs: overcoming challenges to identify and characterize functional microproteins
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63. Enhancer identification through comparative genomics
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64. A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation
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65. Alu elements shape the primate transcriptome by cis-regulation of RNA editing
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66. Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation
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68. Argonaute-Bound Small RNAs from Promoter-Proximal RNA Polymerase II
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69. The CHR promoter element controls cell cycle-dependent gene transcription and binds the DREAM and MMB complexes
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70. Conserved non-coding elements: developmental gene regulation meets genome organization
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71. The UCSC Genome Browser
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72. The functional repertoires of metazoan genomes
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73. A practical guide for the functional annotation of genetic variations using SNPnexus
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74. Dial M( RF ) for myogenesis
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75. ATXN1 Protein Family and CIC Regulate Extracellular Matrix Remodeling and Lung Alveolarization
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76. Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics
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77. Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variants
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78. The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences
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79. Modeling Human Severe Combined Immunodeficiency and Correction by CRISPR/Cas9-Enhanced Gene Targeting
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80. Predicting chromatin organization using histone marks
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81. Tools for Predicting the Functional Impact of Nonsynonymous Genetic Variation
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82. A genome-wide screen for noncoding elements important in primate evolution
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83. On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila
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84. Sequencing and Comparative Analysis of a Conserved Syntenic Segment in the Solanaceae
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86. Nucleosomes are preferentially positioned at exons in somatic and sperm cells
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88. Strategies to Annotate and Characterize Long Noncoding RNAs: Advantages and Pitfalls
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89. Cell-Type-Specific Profiling of Alternative Translation Identifies Regulated Protein Isoform Variation in the Mouse Brain
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90. An ancient viral epidemic involving host coronavirus interacting genes more than 20,000 years ago in East Asia
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91. Personal and population genomics of human regulatory variation
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93. An Exon-Capture System for the Entire Class Ophiuroidea
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94. Candidate genes and functional noncoding variants identified in a canine model of obsessive-compulsive disorder
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95. The identification and functional annotation of RNA structures conserved in vertebrates
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96. Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk
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97. CScape: a tool for predicting oncogenic single-point mutations in the cancer genome
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98. Both Noncoding and Protein-Coding RNAs Contribute to Gene Expression Evolution in the Primate Brain
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99. Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
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100. Male-Specific Fruitless Isoforms Target Neurodevelopmental Genes to Specify a Sexually Dimorphic Nervous System
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