The Phusion Assembler

Basic local alignment search tool

Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works

The sequence of the human genome

Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) · Science · doi:10.1126/science.1058040 · Cited by 13,909 · see citing works

Initial sequencing and comparative analysis of the mouse genome

Mouse Genome Sequencing Consortium (2002) · Nature · doi:10.1038/nature01262 · Cited by 7,187 · see citing works

Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy AssessmentPreprint

Ewing, B., Hillier, L., Wendl, M. C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.175 · Cited by 6,993 · see citing works

Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae Rd

Fleischmann, R. D., Adams, M. D., White, O. R., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J.-F., Dougherty, B. A., Merrick, J. M., et al. (1995) · Science · doi:10.1126/science.7542800 · Cited by 5,641 · see citing works

Base-Calling of Automated Sequencer Traces Using <i>Phred.</i> II. Error Probabilities

Ewing, B., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.186 · Cited by 5,439 · see citing works

A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )

Yu, J. M., Hu, S., Wang, J., Wong, G. K., Liu, B., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., et al. (2002) · Science · doi:10.1126/science.1068037 · Cited by 4,205 · see citing works

Whole-Genome Shotgun Assembly and Analysis of the Genome of <i>Fugu rubripes</i>

Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J.-M., Dehal, P., Christoffels, A., Rash, S., Hoon, S., Smit, A., et al. (2002) · Science · doi:10.1126/science.1072104 · Cited by 1,591 · see citing works

A Whole-Genome Assembly of Drosophila

Myers, E. W., Sutton, G. G., Delcher, A. L., Dew, I. M., Fasulo, D., Flanigan, M. J., Kravitz, S. A., Mobarry, C. M., Reinert, K., Remington, K., et al. (2000) · Science · doi:10.1126/science.287.5461.2196 · Cited by 1,533 · see citing works

Nucleotide sequence of bacteriophage λ DNA

Sanger, F., Coulson, A. R., Hong, G. F., Hill, D. F., & Petersen, G. B. (1982) · Journal of Molecular Biology · doi:10.1016/0022-2836(82)90546-0 · Cited by 1,174 · see citing works

SSAHA: A Fast Search Method for Large DNA Databases

Ning, Z., Cox, A. J., & Mullikin, J. C. (2001) · Genome Research · doi:10.1101/gr.194201 · Cited by 965 · see citing works

Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing

Staden, R. (1982) · Nucleic Acids Research · doi:10.1093/nar/10.15.4731 · Cited by 735 · see citing works

A mew computer method for the storage and manipulation of DNA gel reading data

Staden, R. (1980) · Nucleic Acids Research · doi:10.1093/nar/8.16.3673 · Cited by 688 · see citing works

High-Throughput Gene Mapping in Caenorhabditis elegansPreprint

Swan, K. A., Curtis, D. E., McKusick, K. B., Voinov, A. V., Mapa, F., & Cancilla, M. R. (2002) · Genome Research · doi:10.1101/gr.208902 · Cited by 618 · see citing works

A physical map of the mouse genome

Gregory, S. G., Sekhon, M., Schein, J. E., Zhao, S., Osoegawa, K., Scott, C., Evans, R. S., Burridge, P. W., Cox, T. V., Fox, C. A., et al. (2002) · Nature · doi:10.1038/nature00957 · Cited by 330 · see citing works

Human Whole-Genome Shotgun Sequencing

Weber, J. L., & Myers, E. W. (1997) · Genome Research · doi:10.1101/gr.7.5.401 · Cited by 311 · see citing works

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2Preprint

Jaffe, D. B., Butler, J., Gnerre, S., Mauceli, E., Lindblad-Toh, K., Mesirov, J. P., Zody, M. C., & Eric, S. L. (2003) · Genome Research · doi:10.1101/gr.828403 · Cited by 303 · see citing works

Against a Whole-Genome ShotgunPreprint

Green, P. (1997) · Genome Research · doi:10.1101/gr.7.5.410 · Cited by 157 · see citing works

RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun DataPreprint

Wang, J., Wong, G. K., Ni, P., Han, Y., Huang, X., Zhang, J., Ye, C., Zhang, Y., Hu, J., Zhang, K., et al. (2002) · Genome Research · doi:10.1101/gr.165102 · Cited by 72 · see citing works

Modeling the Feasibility of Whole Genome Shotgun Sequencing Using a Pairwise End Strategy

Siegel, A. F., van den Engh, G., Hood, L., Trask, B. J., & Roach, J. C. (2000) · Genomics · doi:10.1006/geno.2000.6303 · Cited by 21 · see citing works

Clone by clone by clone

Olson, M. V. (2001) · Nature · doi:10.1038/35057271 · Cited by 17 · see citing works

Velvet: Algorithms for de novo short read assembly using de Bruijn graphsPreprint

Zerbino, D. R., & Birney, E. (2008) · Genome Research · doi:10.1101/gr.074492.107 · Cited by 9,387 · see citing works

Versatile and open software for comparing large genomes

Kurtz, S., Phillippy, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C., & Salzberg, S. L. (2004) · Genome Biology · doi:10.1186/gb-2004-5-2-r12 · Cited by 5,254 · see citing works

De novo assembly of human genomes with massively parallel short read sequencing

Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., et al. (2010) · Genome Research · doi:10.1101/gr.097261.109 · Cited by 2,926 · see citing works

A map of rice genome variation reveals the origin of cultivated rice

Huang, X., Kurata, N., Wei, X., Wang, Z.-X., Wang, A., Zhao, Q., Zhao, Y., Liu, K., Lu, H., Li, W., et al. (2012) · Nature · doi:10.1038/nature11532 · Cited by 1,631 · see citing works

The MaSuRCA genome assembler

Zimin, A. V., Marçais, G., Puiu, D., Roberts, M., Salzberg, S. L., & Yorke, J. A. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt476 · Cited by 1,421 · see citing works

Population genomics of domestic and wild yeasts

Liti, G., Carter, D. M., Moses, A. M., Warringer, J., Parts, L., James, S. A., Davey, R., Roberts, I. N., Burt, A., Koufopanou, V., et al. (2008) · Nature · doi:10.1038/nature07743 · Cited by 1,391 · see citing works

A Draft Sequence for the Genome of the Domesticated Silkworm ( Bombyx mori )

Biology analysis group, Xia, Q., Zhou, Z., Lu, C., Cheng, D., Dai, F., Li, B., Zhao, P., Zha, X., Cheng, T., et al. (2004) · Science · doi:10.1126/science.1102210 · Cited by 1,121 · see citing works

The genome of the blood fluke Schistosoma mansoni

Berriman, M., Haas, B. J., LoVerde, P. T., Wilson, R. A., Dillon, G. P., Cerqueira, G. G., Mashiyama, S. T., Al‐Lazikani, B., Andrade, L. F., Ashton, P. D., et al. (2009) · Nature · doi:10.1038/nature08160 · Cited by 1,051 · see citing works

The Genomes of Oryza sativa: A History of Duplications

Yu, J. M., Wang, J., Lin, W., Li, H., Li, H., Zhou, J., Ni, P., Dong, W., Hu, S., Zeng, C., et al. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030038 · Cited by 976 · see citing works

The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics

Stein, L. D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M. R., Chen, N., Chinwalla, A., Clarke, L., Clee, C. M., Coghlan, A., et al. (2003) · PLoS Biology · doi:10.1371/journal.pbio.0000045 · Cited by 931 · see citing works

The genome of the protist parasite Entamoeba histolytica

Loftus, B., Anderson, I., Davies, R., Alsmark, U. C. M., Samuelson, J. C., Amedeo, P., Roncaglia, P., Berriman, M., Hirt, R. P., Mann, B. J., et al. (2005) · Nature · doi:10.1038/nature03291 · Cited by 824 · see citing works

The Genome of the Ctenophore <i>Mnemiopsis leidyi</i> and Its Implications for Cell Type Evolution

Ryan, J. F., Pang, K., Schnitzler, C. E., Nguyen, A.-D., Moreland, R. T., Simmons, D. K., Koch, B. J., Francis, W. R., Havlak, P., Program, N. C. S., et al. (2013) · Science · doi:10.1126/science.1242592 · Cited by 702 · see citing works

The Schistosoma japonicum genome reveals features of host–parasite interplay

Zhou, Y., Zheng, H., Chen, Y., Zhang, L., Wang, K., Guo, J., Huang, Z., Zhang, B., Huang, W., Liu, F., et al. (2009) · Nature · doi:10.1038/nature08140 · Cited by 658 · see citing works

De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computerPreprint

Hernández, D., François, P., Farinelli, L., Østerås, M., & Schrenzel, J. (2008) · Genome Research · doi:10.1101/gr.072033.107 · Cited by 632 · see citing works

The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)

Peng, Z., Lu, Y. C., Li, L., Zhao, Q., Feng, Q., Gao, Z., Lu, H., Hu, T., Yao, N., Liu, K., et al. (2013) · Nature Genetics · doi:10.1038/ng.2569 · Cited by 590 · see citing works

Assemblathon 1: A competitive assessment of de novo short read assembly methodsPreprint

Earl, D. A., Bradnam, K. R., John, J. S., Darling, A. E., Lin, D., Fass, J., Yu, H. O. K., Buffalo, V., Zerbino, D. R., Diekhans, M., et al. (2011) · Genome Research · doi:10.1101/gr.126599.111 · Cited by 503 · see citing works

Complete Khoisan and Bantu genomes from southern Africa

Schuster, S. C., Miller, W., Ratan, A., Tomsho, L. P., Giardine, B. M., Kasson, L. R., Harris, R. S., Petersen, D. C., Zhao, F., Qi, J., et al. (2010) · Nature · doi:10.1038/nature08795 · Cited by 500 · see citing works

The fragment assembly string graph

Myers, E. W. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti1114 · Cited by 424 · see citing works

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

Jia, G., Huang, X., Zhi, H., Zhao, Y., Zhao, Q., Li, W., Yang, C., Yang, L., Liu, K., Lu, H., et al. (2013) · Nature Genetics · doi:10.1038/ng.2673 · Cited by 453 · see citing works

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

Chen, L., Qiu, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., et al. (2019) · Science · doi:10.1126/science.aav6202 · Cited by 441 · see citing works

Exploiting sparseness in de novo genome assembly

Ye, C., Ma, Z. S., Cannon, C. H., Pop, M., & Yu, D. W. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-s6-s1 · Cited by 413 · see citing works

Minimus: a fast, lightweight genome assembler

Sommer, D. D., Delcher, A. L., Salzberg, S. L., & Pop, M. (2007) · BMC Bioinformatics · doi:10.1186/1471-2105-8-64 · Cited by 386 · see citing works

Assessing the gene space in draft genomes

Parra, G., Bradnam, K., Ning, Z., Keane, T., & Korf, I. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn916 · Cited by 395 · see citing works

Initial sequence and comparative analysis of the cat genome

Pontius, J. U., Mullikin, J. C., Smith, D. R., Agencourt Sequencing Team, Lindblad-Toh, K., Gnerre, S., Clamp, M., Chang, J., Stephens, R., Neelam, B., et al. (2007) · Genome Research · doi:10.1101/gr.6380007 · Cited by 368 · see citing works

Analysis of the Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

Xu, H., Song, J., Luo, H., Zhang, Y., Li, Q., Zhu, Y., Xu, J., Li, Y., Song, C., Wang, B., et al. (2016) · Molecular Plant · doi:10.1016/j.molp.2016.03.010 · Cited by 347 · see citing works

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

Murchison, E. P., Schulz-Trieglaff, O. B., Ning, Z., Alexandrov, L. B., Bauer, M. J., Fu, B., Hims, M. M., Ding, Z., Ivakhno, S., Stewart, C. M., et al. (2012) · Cell · doi:10.1016/j.cell.2011.11.065 · Cited by 320 · see citing works

Genomics of the fungal kingdom: Insights into eukaryotic biologyPreprint

Galagan, J. E., Henn, M. R., Ma, L., Cuomo, C. A., & Birren, B. W. (2005) · Genome Research · doi:10.1101/gr.3767105 · Cited by 314 · see citing works

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2Preprint

Jaffe, D. B., Butler, J., Gnerre, S., Mauceli, E., Lindblad-Toh, K., Mesirov, J. P., Zody, M. C., & Eric, S. L. (2003) · Genome Research · doi:10.1101/gr.828403 · Cited by 303 · see citing works

PCAP: A Whole-Genome Assembly ProgramPreprint

Huang, X., Wang, J., Aluru, S., Yang, S., & Hillier, L. (2003) · Genome Research · doi:10.1101/gr.1390403 · Cited by 289 · see citing works

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencingPreprint

Dohm, J., Lottaz, C., Borodina, T., & Himmelbauer, H. (2007) · Genome Research · doi:10.1101/gr.6435207 · Cited by 281 · see citing works

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

Tsai, I. J., Otto, T. D., & Berriman, M. (2010) · Genome biology · doi:10.1186/gb-2010-11-4-r41 · Cited by 282 · see citing works

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

Li, Z., Chen, Y., Mu, D., Yuan, J., Shi, Y., Zhang, H., Gan, J., Li, N., Hu, X., Liu, B., et al. (2011) · Briefings in Functional Genomics · doi:10.1093/bfgp/elr035 · Cited by 268 · see citing works

Genome assembly forensics: finding the elusive mis-assembly

Phillippy, A. M., Schatz, M. C., & Pop, M. (2008) · Genome biology · doi:10.1186/gb-2008-9-3-r55 · Cited by 275 · see citing works

Detection of Genomic Structural Variants from Next-Generation Sequencing Data

Tattini, L., D’Aurizio, R., & Magi, A. (2015) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2015.00092 · Cited by 271 · see citing works

A comprehensive evaluation of rodent malaria parasite genomes and gene expression

Otto, T. D., Böhme, U., Jackson, A. P., Hunt, M., Franke-Fayard, B. M. D., Hoeijmakers, W. A. M., Religa, A. A., Robertson, L., Sanders, M. J., Ogun, S. A., et al. (2014) · BMC Biology · doi:10.1186/preaccept-1233682211145405 · Cited by 271 · see citing works

Pre-Bilaterian Origins of the Hox Cluster and the Hox Code: Evidence from the Sea Anemone, Nematostella vectensis

Ryan, J. F., Mazza, M. E., Pang, K., Matus, D. Q., Baxevanis, A. D., Martindale, M. Q., & Finnerty, J. R. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000153 · Cited by 241 · see citing works

De Novo Repeat Classification and Fragment AssemblyPreprint

Pevzner, P. A., Tang, H., & Tesler, G. (2004) · Genome Research · doi:10.1101/gr.2395204 · Cited by 236 · see citing works

Comparative genomics: genome-wide analysis in metazoan eukaryotes

Ureta‐Vidal, A., Ettwiller, L. M., & Birney, E. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1043 · Cited by 233 · see citing works

Building near-complete plant genomes

Michael, T. P., & VanBuren, R. (2020) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2019.12.009 · Cited by 212 · see citing works

De novo assembly of short sequence reads

Paszkiewicz, K., & Studholme, D. J. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbq020 · Cited by 204 · see citing works

Large-scale gene losses underlie the genome evolution of parasitic plant Cuscuta australis

Sun, G., Xu, Y., Liu, H., Sun, T., Zhang, J., Hettenhausen, C., Shen, G., Qi, J., Qin, Y., Li, J., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-04721-8 · Cited by 198 · see citing works

Hierarchical Scaffolding With BambusPreprint

Pop, M., Kosack, D. S., & Salzberg, S. L. (2004) · Genome Research · doi:10.1101/gr.1536204 · Cited by 198 · see citing works

Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences

Gao, S., Sung, W.-K. K., & Nagarajan, N. (2011) · Journal of Computational Biology · doi:10.1089/cmb.2011.0170 · Cited by 197 · see citing works

Genome Degeneration and Adaptation in a Nascent Stage of Symbiosis

Oakeson, K., Gil, R., Clayton, A. L., Dunn, D., von Niederhausern, A. V., Hamil, C., Aoyagi, A., Duval, B., Baca, A., Silva, F. J., et al. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evt210 · Cited by 203 · see citing works

Structure and Content of the Entamoeba histolytica Genome

Clark, C. G., Alsmark, U. C. M., Tazreiter, M. H., Saito‐Nakano, Y., Ali, V., Marion, S., Weber, C., Mukherjee, C., Bruchhaus, I., Tannich, E., et al. (2007) · Advances in Parasitology/Advances in parasitology · doi:10.1016/s0065-308x(07)65002-7 · Cited by 187 · see citing works

The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis

Ryan, J. F., Burton, P. M., Mazza, M. E., Kwong, G. K., Mullikin, J. C., & Finnerty, J. R. (2006) · Genome biology · doi:10.1186/gb-2006-7-7-r64 · Cited by 185 · see citing works

Assembly of polymorphic genomes: Algorithms and application to Ciona savignyiPreprint

Vinson, J. P., Jaffe, D. B., O'Neill, K., Karlsson, E. K., Stange-Thomann, N., Anderson, S. T., Mesirov, J. P., Satoh, N., Satou, Y., Nusbaum, C., et al. (2005) · Genome Research · doi:10.1101/gr.3722605 · Cited by 184 · see citing works

The Atlas Genome Assembly SystemPreprint

Havlak, P., Chen, R., Durbin, K. J., Egan, A., Ren, Y., Song, X., Weinstock, G. M., & Gibbs, R. A. (2004) · Genome Research · doi:10.1101/gr.2264004 · Cited by 183 · see citing works

Beware of mis-assembled genomes

Salzberg, S. L., & Yorke, J. A. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti769 · Cited by 180 · see citing works

The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa

Ryan, J. F., Pang, K., Program, N. C. S., Mullikin, J. C., Martindale, M. Q., & Baxevanis, A. D. (2010) · EvoDevo · doi:10.1186/2041-9139-1-9 · Cited by 160 · see citing works

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

Horner, D. S., Pavesi, G., Castrignanò, T., Meo, P. D. D., Liuni, S., Sammeth, M., Picardi, E., & Pesole, G. (2009) · Briefings in Bioinformatics · doi:10.1093/bib/bbp046 · Cited by 173 · see citing works

Nanopore sequencing data analysis: state of the art, applications and challenges

Magi, A., Semeraro, R., Mingrino, A., Giusti, B., & D’Aurizio, R. (2017) · Briefings in Bioinformatics · doi:10.1093/bib/bbx062 · Cited by 154 · see citing works

A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses

Clayton, A. L., Oakeson, K. F., Gutin, M., Pontes, A., Dunn, D. M., von Niederhausern, A. C., Weiss, R. B., Fisher, M. A., & Dale, C. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002990 · Cited by 148 · see citing works

Comparing De Novo Genome Assembly: The Long and Short of It

Narzisi, G., & Mishra, B. (2011) · PLoS ONE · doi:10.1371/journal.pone.0019175 · Cited by 146 · see citing works

Omics Technologies, Data and Bioinformatics Principles

Schneider, M. V., & Orchard, S. E. (2011) · Methods in molecular biology · doi:10.1007/978-1-61779-027-0_1 · Cited by 136 · see citing works

Next-Generation Sequencing and Large Genome Assemblies

Henson, J., Tischler, G., & Ning, Z. (2012) · Pharmacogenomics · doi:10.2217/pgs.12.72 · Cited by 132 · see citing works

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

Schnitzler, C. E., Pang, K., Powers, M. L., Reitzel, A. M., Ryan, J. F., Simmons, D., Tada, T., Park, M., Gupta, J., Brooks, S. Y., et al. (2012) · BMC Biology · doi:10.1186/1741-7007-10-107 · Cited by 132 · see citing works

Consensus generation and variant detection by Celera Assembler

Denisov, G., Walenz, B. P., Halpern, A. L., Miller, J. R., Axelrod, N., Levy, S., & Sutton, G. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn074 · Cited by 131 · see citing works

Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi

Pang, K., Ryan, J. F., Program, N. C. S., Mullikin, J. C., Baxevanis, A. D., & Martindale, M. Q. (2010) · EvoDevo · doi:10.1186/2041-9139-1-10 · Cited by 115 · see citing works

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication

Nossa, C. W., Havlak, P., Yue, J., Lv, J., Vincent, K. Y., Brockmann, H. J., & Putnam, N. H. (2014) · GigaScience · doi:10.1186/2047-217x-3-9 · Cited by 108 · see citing works

StellaBase: The Nematostella vectensis Genomics Database

Sullivan, J. C. (2005) · Nucleic Acids Research · doi:10.1093/nar/gkj020 · Cited by 108 · see citing works

The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils

Stammnitz, M. R., Coorens, T. H. H., Gori, K. C., Hayes, D., Fu, B., Wang, J., Martin-Herranz, D. E., Alexandrov, L. B., Baez‐Ortega, A., Barthorpe, S., et al. (2018) · Cancer Cell · doi:10.1016/j.ccell.2018.03.013 · Cited by 107 · see citing works

Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens

Wilkinson, P. A., Waterfield, N. R., Crossman, L. C., Corton, C. H., Sánchez-Contreras, M., Vlisidou, I., Barron, A. J., Bignell, A., Clark, L., Ormond, D., et al. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-302 · Cited by 106 · see citing works

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

Small, K. S., Brudno, M., Hill, M. M., & Sidow, A. (2007) · Genome biology · doi:10.1186/gb-2007-8-3-r41 · Cited by 106 · see citing works

Incipient diploidization of the medicinal plant Perilla within 10,000 years

Zhang, Y., Shen, Q., Leng, L., Zhang, D., Chen, S., Shi, Y., Ning, Z., & Chen, S. (2021) · Nature Communications · doi:10.1038/s41467-021-25681-6 · Cited by 96 · see citing works

State of cat genomics

O’Brien, S. J., Johnson, W. E., Driscoll, C. A., Pontius, J. U., Pecon‐Slattery, J., & Menotti-Raymond, M. A. (2008) · Trends in Genetics · doi:10.1016/j.tig.2008.03.004 · Cited by 94 · see citing works

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

Aury, J., Cruaud, C., Barbe, V., Rogier, O., Mangenot, S., Samson, G., Poulain, J., Anthouard, V., Scarpelli, C., Artiguenave, F., et al. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-603 · Cited by 92 · see citing works

Hawkeye: an interactive visual analytics tool for genome assemblies

Schatz, M. C., Phillippy, A. M., Shneiderman, B., & Salzberg, S. L. (2007) · Genome biology · doi:10.1186/gb-2007-8-3-r34 · Cited by 91 · see citing works

De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions

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The Leukocyte Receptor Complex in Chicken Is Characterized by Massive Expansion and Diversification of Immunoglobulin-Like Loci

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