Spectral Entropies as Information-Theoretic Tools for Complex Network Comparison
Open accessAbstract
Any physical system can be viewed from the perspective that information is implicitly represented in its state. However, the quantification of this information when it comes to complex networks has remained largely elusive. In this work, we use techniques inspired by quantum statistical mechanics to define an entropy measure for complex networks and to develop a set of information-theoretic tools, based on network spectral properties, such as Renyi q-entropy, generalized Kullback-Leibler and Jensen-Shannon divergences, the latter allowing us to define a natural distance measure between complex networks. First we show that by minimizing the Kullback-Leibler divergence between an observed network and a parametric network model, inference of model parameter(s) by means of maximum-likelihood estimation can be achieved and model selection can be performed appropriate information criteria. Second, we show that the information-theoretic metric quantifies the distance between pairs of networks and we can use it, for instance, to cluster the layers of a multilayer system. By applying this framework to networks corresponding to sites of the human microbiome, we perform hierarchical cluster analysis and recover with high accuracy existing community-based associations. Our results imply that spectral based statistical inference in complex networks results in demonstrably superior performance as well as a conceptual backbone, filling a gap towards a network information theory.
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Certain quantum systems have been shown to exhibit complex features related to classical systems, as well as novel mechanisms and principles that interrelate complex features in quantum systems.
“Certain quantum systems have been shown to indeed exhibit complex features related to classical systems, as well as novel mechanisms and principles that interrelate complex features in quantum systems 6 -12,32 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
The Introduction (p. 1) describes applying complex-network ideas to quantum systems, including node centrality in quantum walks and community structures in quantum systems. That supports a connection between classical network features and quantum systems, but the paper does not report novel mechanisms or principles that interrelate complex features in quantum systems; the Conclusions (p. 11) frame further quantum applications as prospective. (LLM, conf=0.78)
Experimental — accuracy not yet measuredThe same tools can be appropriately modified to apply to traditional complex networks, suggesting the existence of a framework - network information theory - suitable for application to both classical and quantum networked systems.
“Interestingly, the same tools can then be appropriately modi fi ed to apply to traditional complex networks, suggesting the existence of a framework -network information theory -suitable for application to both classical and quantum networked systems 32,41,42 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
This undesirable feature can be addressed by means of a more grounded definition, whose rationale is to measure the entropy of a network by exploiting how information diffuses through its topology.
“This undesirable feature can be addressed by means of a more grounded de fi nition 32 , whose rationale is to measure the entropy of a network by exploiting how information diffuses through its topology.”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
Quantum-inspired tools, such as information entropies and quantum distance measures, have been successfully applied to practical problems concerning classical complex networks.
“quantum-inspired tools, such as information entropies and quantum distance measures, have been successfully applied to practical problems concerning classical complex networks 32 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
A research line is emerging that seeks to quantify networked systems in terms of implicit information processing capacity, with applications to social, technological, and biological systems.
“In fact, a research line is emerging now that seeks to quantify, in terms of implicit information processing capacity, networked systems, with several applications to social, technological, and biological systems 32,41,42,90,91 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
The introduction of network likelihood opens the door to a variety of applications in statistical inference and model selection, based on concepts such as the Fisher information matrix, Akaike and Bayesian information criteria, and minimum description length.
“The introduction of network likelihood opens the door to a variety of applications in statistical inference and model selection, based on concepts such as the Fisher information matrix, Akaike and Bayesian information criteria, and minimum description length, to cite some of them 32 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
Time plays the role of a resolution parameter allowing one to probe entropy at different scales.
“where time plays the role of a resolution parameter allowing one to probe entropy at different scales 32 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
By exploiting the classical result that minimization of Kullback-Leibler divergence between a reference distribution and its parametric model corresponds to maximization of the likelihood, in a network context this allows one to define the network loglikelihood.
“By exploiting the well-known classical result that the minimization of Kullback -Leibler divergence between a reference distribution and its parametric model corresponds to the maximization of the likelihood, it has been shown that in a network context this allows one to de fi ne the network loglikelihood”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
The von Neumann entropy calculated from the rescaled Laplacian does not satisfy the subadditivity property in some circumstances.
“It has been recently shown that the von Neumann entropy calculated from the rescaled Laplacian does not satisfy the subadditivity property in some circumstances 32,41 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
The Jensen-Shannon distance between layers of a multiplex system has been used to identify community-based associations in the human microbiome, in agreement with biological expectation.
“In another application the Jensen -Shannon distance between layers of a multiplex system has been used to identify community-based associations in the human microbiome 32 , where the microbial network corresponding to each body site is represented by a layer in a multiplex network, in perfect agreement with biological expectation 92 .”
From Complex networks from classical to quantum (2019) · cites this paper as [32]
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Huang, S., Sun, T., Shi, J., Gong, P., Yang, X., Zheng, J. J., Zhuang, H., & Ouyang, Q. (2024) · Sensors · doi:10.3390/s24227226 · Cited by 7 · see citing works
Engineering Emergence: A Survey on Control in the World of Complex Networks
Berceanu, C., & Pătraşcu, M. (2022) · Automation · doi:10.3390/automation3010009 · Cited by 7 · see citing works
A k-shell decomposition structural entropy of complex networks
Xian, Y., Li, M., & Zhang, Q. (2025) · Physica A Statistical Mechanics and its Applications · doi:10.1016/j.physa.2025.130859 · Cited by 6 · see citing works
Extracting High-Fidelity Smaller Scale Subgraphs of Complex Networks by Edge-Reinforced Random Walk
Chen, D., & Su, H. (2024) · IEEE Transactions on Computational Social Systems · doi:10.1109/tcss.2024.3381777 · Cited by 6 · see citing works
Laplacian renormalization group: an introduction to heterogeneous coarse-graining
Caldarelli, G., Gabrielli, A., Gili, T., & Villegas, P. (2024) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/ad57b1 · Cited by 6 · see citing works
Dismantling directed networks: A multi-temporal information field approach
Wu, M., Mou, J., Dai, B., Tan, S., & Lu, X. B. (2025) · Chaos Solitons & Fractals · doi:10.1016/j.chaos.2025.116404 · Cited by 6 · see citing works
Tang, F., Zhao, X., & Li, C.-X. (2023) · Mathematics · doi:10.3390/math11071573 · Cited by 6 · see citing works
Network Structure Transmission With Limited Data via Compressed Sensing
Hu, Z.-L., Han, X., & Ma, L. (2020) · IEEE Transactions on Network Science and Engineering · doi:10.1109/tnse.2020.3018134 · Cited by 6 · see citing works
Multiscale Information Propagation in Emergent Functional Networks
Ghavasieh, A., & Domenico, M. D. (2021) · Entropy · doi:10.3390/e23101369 · Cited by 6 · see citing works
Ginestra Bianconi, A. (2022) · Physical review. E · doi:10.1103/physreve.105.034310 · Cited by 6 · see citing works
Emergent information dynamics in many-body interconnected systems
Merbis, W., & Domenico, M. D. (2023) · Physical review. E · doi:10.1103/physreve.108.014312 · Cited by 6 · see citing works
Dilution of Ferromagnets via a Random Graph‐Based Strategy
Javarone, M. A., & Marinazzo, D. (2018) · Complexity · doi:10.1155/2018/2845031 · Cited by 6 · see citing works
Kullback Leibler divergence in complete bacterial and phage genomes
Akhter, S., Aziz, R. K., Kashef, M. T., Ibrahim, E. S., Bailey, B., & Edwards, R. A. (2017) · PeerJ · doi:10.7717/peerj.4026 · Cited by 6 · see citing works
From the Difference of Structures to the Structure of the Difference
Zanin, M., Menasalvas, E., Sun, X., & Wandelt, S. (2018) · Complexity · doi:10.1155/2018/4326097 · Cited by 6 · see citing works
A simplex path integral and a simplex renormalization group for high-order interactions *
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Conduction and entropy analysis of a mixed memristor-resistor model for neuromorphic networks
Cipollini, D., & Schomaker, L. (2023) · Neuromorphic Computing and Engineering · doi:10.1088/2634-4386/acd6b3 · Cited by 5 · see citing works
RWE: A Random Walk Based Graph Entropy for the Structural Complexity of Directed Networks
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- Authors
- De Domenico, M., & Biamonte, J.
- Affiliations
- University of Waterloo (CA)
- ORCID
- Biamonte, Jacob
- Venue
- Physical Review X
- Publisher
- American Physical Society (APS)
- Published
- 2016-12-21
- Volume
- 6
- Issue
- 4
- ISSN
- 2160-3308 (ISSN-L)
- OpenAlex
- W2513813309
- Cited by
- 160
- References
- 119
- Citations by year
- 2026: 9 · 2025: 19 · 2024: 22 · 2023: 18 · 2022: 16 · 2021: 22 · 2020: 25 · 2019: 9 · 2018: 13 · 2017: 7
- FWCI
- 5.48
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Physical Review X (publishedVersion, cc-by)
- arXiv (Cornell University) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Padua Research Archive (University of Padova) (submittedVersion)
- arXiv (Cornell University)
- Funders
- Foundational Questions Institute
- Juan de la Cierva (IJCI-2014-20225)
- IARPA
- Topics
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › Complex Network Analysis Techniques
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › Statistical Mechanics and Entropy
- Physical Sciences › Mathematics › Geometry and Topology › Graph theory and applications
- Keywords
- network entropy, complex networks, Kullback-Leibler divergence, Jensen-Shannon divergence, network comparison, maximum likelihood estimation, model selection, information criteria, human microbiome, community structure, network information theory
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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