The DOI matches its Crossref record; 61 of the 61 references it cites were found in a registry or an index.
Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes
Open accessAbstract
The phytochrome (phy) family of photoreceptors regulates changes in gene expression in response to red/far-red light signals in part by physically interacting with constitutively nucleus-localized phy-interacting basic helix-loop-helix transcription factors (PIFs). Here, we show that PIF1, the member with the highest affinity for phys, is strongly sensitive to the quality and quantity of light. phyA plays a dominant role in regulating the degradation of PIF1 following initial light exposure, while phyB and phyD and possibly other phys also influence PIF1 degradation after prolonged illumination. PIF1 is rapidly phosphorylated and ubiquitinated under red and far-red light before being degraded with a half-life of ∼1 to 2 min under red light. Although PIF1 interacts with phyB through a conserved active phyB binding motif, it interacts with phyA through a novel active phyA binding motif. phy interaction is necessary but not sufficient for the light-induced phosphorylation and degradation of PIF1. Domain-mapping studies reveal that the phy interaction, light-induced degradation, and transcriptional activation domains are located at the N-terminal 150–amino acid region of PIF1. Unlike PIF3, PIF1 does not interact with the two halves of either phyA or phyB separately. Moreover, overexpression of a light-stable truncated form of PIF1 causes constitutively photomorphogenic phenotypes in the dark. Taken together, these data suggest that removal of the negative regulators (e.g., PIFs) by light-induced proteolytic degradation might be sufficient to promote photomorphogenesis.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Transcriptional regulation by the phosphorylation-dependent factor CREB
Mayr, B., & Montminy, M. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35085068 · Cited by 2,587
The Arabidopsis Basic/Helix-Loop-Helix Transcription Factor Family[W]
Toledo-Ortiz, G., Huq, E., & Quail, P. H. (2003) · The Plant Cell · doi:10.1105/tpc.013839 · Cited by 1,328
Self-citationA molecular framework for light and gibberellin control of cell elongation
de Lucas, M., Davière, J.-M., Rodríguez-Falcón, M., Pontin, M., Iglesias-Pedraz, J. M., Lorrain, S., Fankhauser, C., Blázquez, M. A., Titarenko, E., & Prat, S. (2008) · Nature · doi:10.1038/nature06520 · Cited by 1,319
Coordinated regulation of Arabidopsis thaliana development by light and gibberellins
Feng, S., Martinez, C., Gusmaroli, G., Wang, Y., Zhou, J., Wang, F., Chen, L., Yu, L., Iglesias-Pedraz, J. M., Kircher, S., et al. (2008) · Nature · doi:10.1038/nature06448 · Cited by 1,115
PHYTOCHROME STRUCTURE AND SIGNALING MECHANISMS
Rockwell, N. C., Su, Y.-S., & Lagarias, J. C. (2006) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.56.032604.144208 · Cited by 1,088
Light-regulated transcriptional networks in higher plants
Jiao, Y., Lau, O. S., & Deng, X. W. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2049 · Cited by 1,068
Light Signal Transduction in Higher Plants
Chen, M., Chory, J., & Fankhauser, C. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.092259 · Cited by 998
Reed, J. W., Nagpal, P., Poole, D. S., Furuya, M., & Chory, J. (1993) · The Plant Cell · doi:10.1105/tpc.5.2.147 · Cited by 943
Lorrain, S., Allen, T., Duek, P. D., Whitelam, G. C., & Fankhauser, C. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03341.x · Cited by 812
Phytochrome photosensory signalling networks
Quail, P. H. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm728 · Cited by 769
Cited by
Light-Regulated Plant Growth and Development
Kami, C., Lorrain, S., Hornitschek, P., & Fankhauser, C. (2010) · Current Topics in Developmental Biology · doi:10.1016/s0070-2153(10)91002-8 · Cited by 927
Photoreceptor Signaling Networks in Plant Responses to Shade
Casal, J. J. (2013) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050312-120221 · Cited by 865
Phytochrome Signaling Mechanisms
Li, J., Li, G., Wang, H., & Wang Deng, X. (2011) · The Arabidopsis Book · doi:10.1199/tab.0148 · Cited by 561
Toledo-Ortiz, G., Johansson, H., Lee, K. P., Bou-Torrent, J., Stewart, K., Steel, G., Rodríguez-Concepción, M., & Halliday, K. J. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004416 · Cited by 494
Toledo-Ortiz, G., Huq, E., & Rodríguez-Concepción, M. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0914428107 · Cited by 453
Self-citation
Metadata
- Authors
- Shen, H., Zhu, L., Castillon, A., Majee, M., Downie, B., & Huq, E.
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 2008-06-01
- Volume
- 20
- Issue
- 6
- Pages
- 1586-1602
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- OpenAlex
- W2142483150
- Cited by
- 293
- References
- 61
- FWCI
- 15.81
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes. https://app.cochat.ai/papers/10.1105/tpc.108.060020
- The paper
- Shen, H., Zhu, L., Castillon, A., Majee, M., Downie, B., & Huq, E. (2008). Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes. The Plant Cell. https://doi.org/10.1105/tpc.108.060020
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.