The DOI matches its Crossref record; 50 of the 50 references it cites were found in a registry or an index.
Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids
Open accessAbstract
The behavior of transcriptomes and epigenomes in hybrids of heterotic parents is of fundamental interest. Here, we report highly integrated maps of the epigenome, mRNA, and small RNA transcriptomes of two rice (Oryza sativa) subspecies and their reciprocal hybrids. We found that gene activity was correlated with DNA methylation and both active and repressive histone modifications in transcribed regions. Differential epigenetic modifications correlated with changes in transcript levels among hybrids and parental lines. Distinct patterns in gene expression and epigenetic modifications in reciprocal hybrids were observed. Through analyses of single nucleotide polymorphisms from our sequence data, we observed a high correlation of allelic bias of epigenetic modifications or gene expression in reciprocal hybrids with their differences in the parental lines. The abundance of distinct small RNA size classes differed between the parents, and more small RNAs were downregulated than upregulated in the reciprocal hybrids. Together, our data reveal a comprehensive overview of transcriptional and epigenetic trends in heterotic rice crosses and provide a useful resource for the rice community.
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Cites
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Self-citationGenome-wide maps of chromatin state in pluripotent and lineage-committed cells
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Homoeolog expression bias and expression level dominance in allopolyploid cotton
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Chandana, B. S., Mahto, R. K., Singh, R. K., Ford, R., Vaghefi, N., Gupta, S. K., Yadav, H. K., Manohar, M., & Kumar, R. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.900253 · Cited by 23
Epigenetic variation as a new plant breeding tool: A review
Alfalahi, A. O., Hussein, Z. T., Khalofah, A., Sadder, M. T., Qasem, J. R., Al-Khayri, J. M., Jain, S. M., & Almehemdi, A. F. (2022) · Journal of King Saud University - Science · doi:10.1016/j.jksus.2022.102302 · Cited by 23
Metadata
- Authors
- He, G., Zhu, X., Elling, A. A., Chen, L., Wang, X., Guo, L., Liang, M., He, H., Zhang, H., Chen, F., Qi, Y., Chen, R., & Deng, X.-W.
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-01-01
- Volume
- 22
- Issue
- 1
- Pages
- 17-33
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- OpenAlex
- W2125905600
- Cited by
- 561
- References
- 50
- FWCI
- 15.71
- Type
- journal article
- Language
- en
- Open access
- green
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- He, G., Zhu, X., Elling, A. A., Chen, L., Wang, X., Guo, L., Liang, M., He, H., Zhang, H., Chen, F., Qi, Y., Chen, R., & Deng, X.-W. (2010). Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids. The Plant Cell. https://doi.org/10.1105/tpc.109.072041
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