The DOI matches its Crossref record; 69 of the 70 references it cites were found in a registry or an index.
Modulation of Phototropic Responsiveness in Arabidopsis through Ubiquitination of Phototropin 1 by the CUL3-Ring E3 Ubiquitin Ligase CRL3NPH3
Open accessAbstract
Plant phototropism is an adaptive response to changes in light direction, quantity, and quality that results in optimization of photosynthetic light harvesting, as well as water and nutrient acquisition. Though several components of the phototropic signal response pathway have been identified in recent years, including the blue light (BL) receptors phototropin1 (phot1) and phot2, much remains unknown. Here, we show that the phot1-interacting protein NONPHOTOTROPIC HYPOCOTYL3 (NPH3) functions as a substrate adapter in a CULLIN3-based E3 ubiquitin ligase, CRL3NPH3. Under low-intensity BL, CRL3NPH3 mediates the mono/multiubiquitination of phot1, likely marking it for clathrin-dependent internalization from the plasma membrane. In high-intensity BL, phot1 is both mono/multi- and polyubiquitinated by CRL3NPH3, with the latter event targeting phot1 for 26S proteasome-mediated degradation. Polyubiquitination and subsequent degradation of phot1 under high-intensity BL likely represent means of receptor desensitization, while mono/multiubiquitination-stimulated internalization of phot1 may be coupled to BL-induced relocalization of hormone (auxin) transporters.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“CUL3 is required for blue light-induced ubiquitination of PHOT1, and PHOT1 ubiquitination is thought to be involved in phototropism (Salomon et al., 1997; Thomann et al., 2005; Roberts et al., 2011).”
From The action of enhancing weak light capture via phototropic growth and chloroplast movement in plants (2022) · cites this paper as Roberts et al., 2011
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
1 retracted
Voinnet, O., Rivas, S., Mestre, P., & Baulcombe, D. C. (2003) · The Plant Journal · doi:10.1046/j.1365-313x.2003.01676.x · Cited by 1,756
RetractedA Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures
Murashige, T., & Skoog, F. K. (1962) · Physiologia Plantarum · doi:10.1111/j.1399-3054.1962.tb08052.x · Cited by 67,420
Hershko, A., & Ciechanover, A. (1998) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.67.1.425 · Cited by 8,840
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N. G., Palmer, A. E., & Tsien, R. Y. (2004) · Nature Biotechnology · doi:10.1038/nbt1037 · Cited by 4,619
A Gateway Cloning Vector Set for High-Throughput Functional Analysis of Genes in Planta
Curtis, M. D., & Grossniklaus, U. (2003) · PLANT PHYSIOLOGY · doi:10.1104/pp.103.027979 · Cited by 2,645
Proteasome inhibitors: valuable new tools for cell biologists.
Lee, D. H., & Goldberg, A. L. (1998) · Trends in Cell Biology · doi:10.1016/s0962-8924(98)01346-4 · Cited by 1,474
Keap1 Is a Redox-Regulated Substrate Adaptor Protein for a Cul3-Dependent Ubiquitin Ligase Complex
Zhang, D. D., Lo, S., Cross, J. V., Templeton, D. J., & Hannink, M. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.24.10941-10953.2004 · Cited by 1,284
Self-citationCoordinated regulation of Arabidopsis thaliana development by light and gibberellins
Feng, S., Martínez, C., Gusmaroli, G., Wang, Y., Zhou, J., Wang, F., Chen, L., Yu, L., Iglesias‐Pedraz, J. M., Kircher, S., et al. (2008) · Nature · doi:10.1038/nature06448 · Cited by 1,118
CHAFFEY, N. J. (2001) · Trends in Plant Science · doi:10.1016/s1360-1385(01)01902-1 · Cited by 1,045
Light Signal Transduction in Higher Plants
Chen, M., Chory, J., & Fankhauser, C. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.092259 · Cited by 1,002
Flagged first, then by citations
1 of the 70 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Items 101–150 of 150
Wang, X., Han, L., Yin, H., Zhao, Z., Cao, H., Shang, Z., & Kang, E. (2021) · AoB Plants · doi:10.1093/aobpla/plab075 · Cited by 8
He, J., Li, X., Yu, Q., Lü, P., Chen, L., Liu, J., Wang, J., Li, X., & Yang, Y. (2024) · Plant Cell & Environment · doi:10.1111/pce.14916 · Cited by 7
Ermert, A. L., Mailliet, K., & Hughes, J. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.00613 · Cited by 7
Navarre, D. A., Zhu, M. J., & Hellmann, H. A. (2022) · Oxygen · doi:10.3390/oxygen2030025 · Cited by 7
Nonphototrophic hypocotyl 3 domain proteins: traffic directors, hitchhikers, or both?
Verslues, P. E., & Upadhyay, N. (2024) · New Phytologist · doi:10.1111/nph.20211 · Cited by 6
Wang, Z., Shafique, A., Jalal, A. S., Yu, B., Liu, M., Attia, K. A., Fiaz, S., & Mubarik, M. S. (2025) · Rice · doi:10.1186/s12284-025-00808-1 · Cited by 6
Nyadar, P. M., Oberemok, V. V., Omelchenko, A., Kerimova, S., Seidosmanova, E., Krasnodubiets, A., Shumskykh, M., & Bekirova, V. (2023) · Journal of Plant Protection Research · doi:10.24425/jppr.2019.126038 · Cited by 6
Kimura, T., Haga, K., & Sakai, T. (2022) · Plant Signaling & Behavior · doi:10.1080/15592324.2022.2027138 · Cited by 6
Mining of the CULLIN E3 ubiquitin ligase genes in the whole genome of Salvia miltiorrhiza
Gao, X., Li, X., Chen, C., Wang, C., Fu, Y., Zheng, Z., Shi, M., Hao, X., Zhao, L., Qiu, M., et al. (2022) · Current Research in Food Science · doi:10.1016/j.crfs.2022.10.011 · Cited by 6
Phototropism in land plants: Molecules and mechanism from light perception to response
Morrow, J., Willenburg, K. T., & Emmanuel Liscum, A. (2018) · Frontiers in Biology · doi:10.1007/s11515-018-1518-y · Cited by 6
Self-citationIm, S. H., Madhuri, S., Lepetit, B., & Kroth, P. G. (2023) · Journal of Plant Physiology · doi:10.1016/j.jplph.2023.154148 · Cited by 5
Genetic architecture of a light-temperature coincidence detector
Seluzicki, A., & Chory, J. (2025) · Nature Communications · doi:10.1038/s41467-025-62194-y · Cited by 5
Veljovic-Jovanovic, S. D., Kasalica, B. V., Miletić, K. M., Vidović, M., Šušić, N., Jeremic, D. A., & Belca, I. D. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241814265 · Cited by 5
Expression and interaction proteins analysis of BjuFKF1 in stem mustard
Zeng, J., Mo, Y., Chen, J., Li, C., Zhao, L., & Liu, Y. (2020) · Scientia Horticulturae · doi:10.1016/j.scienta.2020.109430 · Cited by 5
Quantitative proteomic analysis of auxin signaling during seedling developmentPreprint
Kelley, D. R., Shen, Z., Walley, J. W., Chapman, E. J., Briggs, S. P., & Estelle, M. A. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/211532 · Cited by 5
Cheng, D., Qiu, H., Zhou, D., Lin, T., Liu, L., Nie, J., He, Q., & Tian, Z. (2024) · Physiologia Plantarum · doi:10.1111/ppl.14650 · Cited by 3
Li, T., Tang, Y., Lin, Z., Wang, J., Zhang, J., Li, Q., Huang, F., Liang, J., Zhang, H., Liu, Z., et al. (2025) · Theoretical and Applied Genetics · doi:10.1007/s00122-025-04912-0 · Cited by 4
Current Understanding of the CRL1 Complex in Arabidopsis
Woo, O.-G., Kim, H., & Lee, J. (2020) · Journal of Plant Biology · doi:10.1007/s12374-020-09274-2 · Cited by 4
Leitner, J. J., & Luschnig, C. (2014) · Methods in molecular biology · doi:10.1007/978-1-4939-1420-3_18 · Cited by 4
Zhao, Q.-P., Zhao, X., Zhu, Z.-Y., Guo, X., Li, N.-N., & Zhang, X. (2017) · Biologia · doi:10.1515/biolog-2017-0070 · Cited by 4
Manishankar, P., Fernandez, A., Rohr, L., Yigit, Y. I., Reuter, L., Schmidt, T., Droste-Borel, I., Keicher, J., Bock, A., & Oecking, C. (2026) · The Plant Cell · doi:10.1093/plcell/koag028 · Cited by 4
Jing, R., Liu, X., Li, R., & Du, L. (2025) · Biochemical Genetics · doi:10.1007/s10528-025-11083-6 · Cited by 3
Identification of RING-H2 Gene Candidates Related to Wood Formation in Poplar
Tong, G., Shen, H., Cao, S., Xu, W., Ma, X., & Cheng, Y. (2019) · Forests · doi:10.3390/f10080698 · Cited by 3
Talloji, P., Nehlin, L., Hüttel, B., Winter, N., Černý, M., Dufková, H., Hamali, B., Hanczaryk, K., Novák, J., Hermanns, M., et al. (2022) · BMC Plant Biology · doi:10.1186/s12870-022-03536-6 · Cited by 3
Wadhwa, N., Kapoor, S., & Kapoor, M. (2023) · FEBS Journal · doi:10.1111/febs.16935 · Cited by 3
CRL3-Mediated Ubiquitination in Arabidopsis: Roles of BTB Proteins in Diverse Biological Processes
Chung, S., Lee, S. J., & Lee, J. (2025) · Journal of Plant Biology · doi:10.1007/s12374-025-09492-6 · Cited by 2
The dual role of the ubiquitin–proteasome system in photomorphogenesis
Zhou, H., & Deng, X. W. (2025) · Essays in Biochemistry · doi:10.1042/ebc20253023 · Cited by 2
Li, S., Gao, H., Li, X., Liu, Y., Zhao, H., Qiu, N., & Zhang, H. (2025) · Horticulturae · doi:10.3390/horticulturae11030274 · Cited by 2
Genome-wide Identification and Bioinformatics Analysis of NRL Gene Family in Rice
Hu, Y., Sun, L., Wang, D., Zhang, D., & Cai, W. (2022) · Molecular Plant Breeding · doi:10.5376/mpb.2022.13.0018 · Cited by 2
Zhu, J., Liang, Y.-P., Yan, H.-R., Wu, Q.-Q., Zhang, Y., Zhou, F.-Y., Zhang, X., & Zhao, X. (2024) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiae537 · Cited by 1
ROOT PHOTOTROPISM 2 (RPT2) is a KAT1 potassium channel regulator required for its accumulation
Locascio, A., Montoliu-Silvestre, E., Nieves‐Cordones, M., Petsch, S., Fuchs, A., Puchalt, C. B., Navarro-Martínez, A., Porcel, R., Andrés‐Colás, N., Rubio, F., et al. (2025) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2025.109922 · Cited by 1
Zhu, S., Yao, H., Liu, J., Zhao, X., Cheng, J., Wang, C., Xu, W., Li, C. L., & Cheng, Y. (2025) · Plants · doi:10.3390/plants15010068 · Cited by 1
Dual regulation of RNase P subunit Rpp30 by an acetyltransferase and E3 ligase in rice immunity
Feng, Q., Xu, Z., Tao, H., Li, W., Hao, Z., You, X., Bellizzi, M. D. R., Ning, Y., & Wang, G. (2026) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiag157 · Cited by 1
Hřivňacký, M., Rác, M., Miksteinová, T., Luschnig, C., & Pavlovič, A. (2026) · Plant Signaling & Behavior · doi:10.1080/15592324.2026.2700912 · Cited by 1
Regulation of Polar Auxin Transport by Protein Phosphorylation
Martı́nez, M. C., Armengot, L., & Marquès‐Bueno, M. M. (2013) · Signaling and communication in plants · doi:10.1007/978-3-642-35299-7_4 · Cited by 1
Manishankar, P., Reuter, L., Rohr, L., Fernandez, A., Yigit, Y. I., Schmidt, T., Droste-Borel, I., Keicher, J., Bock, A., & Oecking, C. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.06.17.598829 · Cited by 1
Light-regulated Development in Arabidopsis
Xu, D. (2014) · Gothenburg University Publications Electronic Archive (Gothenburg University)
Genetical Genomics - Genetic regulation of environmental responses in Arabidopsis
Terpstra, I. R. (2012) · Utrecht University Repository (Utrecht University)
Unraveling new roles and substrates for protein kinase CK2 in arabidopsis thaliana
Armengot, L. (2014) · TDX (Tesis Doctorals en Xarxa)
Mechanisms of Dual-Targeting Arabidopsis HEMERA to the Chloroplasts and Nucleus
Nevarez, P. A. (2016) · DukeSpace (Duke University)
Mechanisms of the phototropic pathway
Morrow, J. (2018) · doi:10.32469/10355/69866
Self-citationXiang, Z., Qingping, Z., Xu, Y., Mu, S.-C., Xiao, Z., 赵, 翔., 赵, 青., 杨, 煦., 慕, 世., & 张, 骁. (2015) · Chinese Bulletin of Botany · doi:10.3724/sp.j.1259.2015.00122
PHOTOTROPIN1 lysine 526 functions to enhance phototropism in Arabidopsis
Tseng, T., Chen, C.-A., & Lo, M.-H. (2024) · Planta · doi:10.1007/s00425-024-04332-2
Li, Y., Pan, H., Hao, Y., Zhu, Y., Chang, Q., & Ren, J. (2024) · Journal of Plant Growth Regulation · doi:10.1007/s00344-024-11530-5
Wang, X., Tian, Y. T., & Chen, H. (2024) · Elsevier eBooks · doi:10.1016/b978-0-12-822563-9.00178-5
Zhang, Y., Xie, J., Dai, K., Yu, Y., & Wu, L. (2026) · Plants · doi:10.3390/plants15071059
Qiu, H., Liu, Y., Lin, T., Cheng, D., Sun, Q., Wu, X., Liu, L., Nie, J., Fan, M., Zhou, J., et al. (2026) · Molecular Horticulture · doi:10.1186/s43897-025-00224-5
Phosphorylation blues: Cracking the phototropin phosphocode
Sullivan, S., Horne, A., Paliogianni, D., Walters, H., & Christie, J. M. (2026) · Trends in Plant Science · doi:10.1016/j.tplants.2026.05.006
Panahi, B., Hamid, R., Ghorbanzadeh, Z., Lakhani, K. G., Golkari, S., & Jacob, F. (2026) · 3 Biotech · doi:10.1007/s13205-026-04967-w
Metadata
- Authors
- Roberts, D., Pedmale, U. V., Morrow, J., Sachdev, S., Lechner, E., Tang, X., Zheng, N., Hannink, M., Genschik, P., & Liscum, E.
- Affiliations
- University of Missouri (US)
- Centre National de la Recherche Scientifique (FR)
- Howard Hughes Medical Institute (US)
- Division of Biological Sciences, University of Missouri, Columbia, Missouri 65211
- ORCID
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-10-01
- Volume
- 23
- Issue
- 10
- Pages
- 3627-3640
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- PMC
- PMC3229139
- OpenAlex
- W2171122839
- Cited by
- 150
- References
- 70
- Citations by year
- 2026: 7 · 2025: 9 · 2024: 12 · 2023: 7 · 2022: 9 · 2021: 12 · 2020: 8 · 2019: 4 · 2018: 10 · 2017: 10 · 2016: 8 · 2015: 9 · 2014: 18 · 2013: 11 · 2012: 16
- FWCI
- 17.36
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
- Locations
- The Plant Cell (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory) (acceptedVersion)
- HAL (submittedVersion)
- Funders
- Howard Hughes Medical Institute
- University of Missouri
- National Cancer Institute (R01CA107134)
- National Institute of General Medical Sciences (T34-GM008396, T32GM008396)
- National Center for Complementary and Integrative Health (1R01-AT003389)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Light effects on plants
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Keywords
- phototropism, phototropin 1, NPH3, ubiquitination, polyubiquitination, monoubiquitination, 26S proteasome degradation, auxin transporters, blue light signaling, Arabidopsis thaliana
- MeSH terms
- Animals, Biological Transport, Carrier Proteins, Cell Line, Chlorocebus aethiops, Indoleacetic Acids, Lepidoptera, Light, Mutation, Phosphoproteins, Nicotiana, Protein Serine-Threonine Kinases, Arabidopsis, Plant Leaves, Phototropism, Arabidopsis Proteins, Seedlings, Ubiquitin-Protein Ligases, Cullin Proteins, Proteasome Endopeptidase Complex, Ubiquitination, Light Signal Transduction, Phototropins, Proteolysis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review