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Improving Computer-Aided Detection UsingConvolutional Neural Networks and Random View Aggregation
Open accessAbstract
Automated computer-aided detection (CADe) has been an important tool in clinical practice and research. State-of-the-art methods often show high sensitivities at the cost of high false-positives (FP) per patient rates. We design a two-tiered coarse-to-fine cascade framework that first operates a candidate generation system at sensitivities ∼ 100% of but at high FP levels. By leveraging existing CADe systems, coordinates of regions or volumes of interest (ROI or VOI) are generated and function as input for a second tier, which is our focus in this study. In this second stage, we generate 2D (two-dimensional) or 2.5D views via sampling through scale transformations, random translations and rotations. These random views are used to train deep convolutional neural network (ConvNet) classifiers. In testing, the ConvNets assign class (e.g., lesion, pathology) probabilities for a new set of random views that are then averaged to compute a final per-candidate classification probability. This second tier behaves as a highly selective process to reject difficult false positives while preserving high sensitivities. The methods are evaluated on three data sets: 59 patients for sclerotic metastasis detection, 176 patients for lymph node detection, and 1,186 patients for colonic polyp detection. Experimental results show the ability of ConvNets to generalize well to different medical imaging CADe applications and scale elegantly to various data sets. Our proposed methods improve performance markedly in all cases. Sensitivities improved from 57% to 70%, 43% to 77%, and 58% to 75% at 3 FPs per patient for sclerotic metastases, lymph nodes and colonic polyps, respectively.
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“We obtain 86% sensitivity on 3 false positives (FP) per patient, versus the prior state-of-art sensitivities of 78% [36] (stacked shallow learning) and 70% [22] (CNN), as prior state-of-the-art.”
From Deep convolutional neural networks for computer-aided detection: cnn architectures, dataset characteristics and transfer learning (2016) · cites this paper as [22]
In the citing paper
“GoogLeNet-RI-L | 0.95 | 0.85 | 0.91 | 0.69”
From Deep convolutional neural networks for computer-aided detection: cnn architectures, dataset characteristics and transfer learning (2016) · cites this paper as [22]
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“This difference lies in the fact that annotated lymph node segmentation masks are required to learn a mid-level semantic boundary detector [36], whereas CNN approaches only need LN locations for training [22].”
From Deep convolutional neural networks for computer-aided detection: cnn architectures, dataset characteristics and transfer learning (2016) · cites this paper as [22]
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Very Deep Convolutional Networks for Large-Scale Image Recognition
Simonyan, K., & Zisserman, A. (2014) · arXiv · doi:10.48550/arxiv.1409.1556 · Cited by 114,148 · cited 1×
“Potentially, larger and deeper convolutional neural networks could be applied to further improve classification performance [59], [60].”
MethodImageNet classification with deep convolutional neural networks
Krizhevsky, A., Sutskever, I., & Hinton, G. E. (2017) · Communications of the ACM · doi:10.1145/3065386 · Cited by 112,155 · cited 10×
“In order to increase the variation of the training data and to avoid overfitting analogous to the data augmentation approach in [14], [17] and [18], multiple 2D or 2.”
BackgroundMethodInfluentialGoing deeper with convolutions
Szegedy, C., Liu, W., Jia, Y., Sermanet, P., Reed, S., Anguelov, D., Erhan, D., Vanhoucke, V., & Rabinovich, A. (2015) · 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) · doi:10.1109/cvpr.2015.7298594 · Cited by 48,562 · cited 1×
“Potentially, larger and deeper convolutional neural networks could be applied to further improve classification performance [59], [60].”
LIBSVM: A library for support vector machines
Chang, C.-C., & Lin, C.-J. (2011) · ACM Transactions on Intelligent Systems and Technology · doi:10.1145/1961189.1961199 · Cited by 40,918 · cited 1×
“This type of cascade classification is similar in spirit to our presented second tier deep classifier (ConvNet), but uses state-of-the-art shallow classifiers (libSVM [47] and sparse linear fusion via the Relevance Vector Machine [48]).”
ResultRich Feature Hierarchies for Accurate Object Detection and Semantic Segmentation
Girshick, R., Donahue, J., Darrell, T., & Malik, J. (2014) · 2014 IEEE Conference on Computer Vision and Pattern Recognition · doi:10.1109/cvpr.2014.81 · Cited by 32,684 · cited 1×
“Potentially allowing the ConvNet optimization to start from an initialization that is better than starting from Gaussian random parameters [57], [58].”
BackgroundBackpropagation Applied to Handwritten Zip Code Recognition
LeCun, Y., Boser, B., Denker, J. S., Henderson, D., Howard, R. E., Hubbard, W., & Jackel, L. D. (1989) · Neural Computation · doi:10.1162/neco.1989.1.4.541 · Cited by 11,891 · cited 2×
“Balancing between positive and negative training populations is generally beneficial for training ConvNets when optimizing with logistic regression cost [15], [14].”
BackgroundMethodTwo-Stream Convolutional Networks for Action Recognition in Videos
Simonyan, K., & Zisserman, A. (2014) · arXiv · doi:10.48550/arxiv.1406.2199 · Cited by 6,756 · cited 3×
“Likewise, the compositional two-stream 2D ConvNet models run on separate spatial (RGB) and temporal (i.e., optical flow field) video frames and achieve the mean accuracy of 87.9% in action classification task, based on a middle scale dataset UCF-101 [50].”
BackgroundInfluentialImproving neural networks by preventing co-adaptation of feature detectors
Hinton, G. E., Srivastava, N., Krizhevsky, A., Sutskever, I., & Salakhutdinov, R. R. (2012) · arXiv · doi:10.48550/arxiv.1207.0580 · Cited by 6,382 · cited 1×
“It is a variation of the previously suggested “DropOut” method [29], [30].”
MethodLarge-Scale Video Classification with Convolutional Neural Networks
Karpathy, A., Toderici, G., Shetty, S., Leung, T., Sukthankar, R., & Fei-Fei, L. (2014) · 2014 IEEE Conference on Computer Vision and Pattern Recognition · doi:10.1109/cvpr.2014.223 · Cited by 6,354 · cited 1×
“This result significantly outperforms the direct 3D “spatial-temporal” ConvNet method [51] at 65.”
How transferable are features in deep neural networks?
Yosinski, J., Clune, J., Bengio, Y., & Lipson, H. (2014) · arXiv · doi:10.48550/arxiv.1411.1792 · Cited by 6,061 · cited 1×
“Potentially allowing the ConvNet optimization to start from an initialization that is better than starting from Gaussian random parameters [57], [58].”
BackgroundMitosis Detection in Breast Cancer Histology Images with Deep Neural Networks
Cireşan, D. C., Giusti, A., Gambardella, L. M., & Schmidhuber, J. (2013) · Lecture Notes in Computer Science · doi:10.1007/978-3-642-40763-5_51 · Cited by 1,536 · cited 3×
“In order to increase the variation of the training data and to avoid overfitting analogous to the data augmentation approach in [14], [17] and [18], multiple 2D or 2.”
BackgroundMethodOne weird trick for parallelizing convolutional neural networksPreprint
Krizhevsky, A. (2014) · arXiv (Cornell University) · doi:10.48550/arxiv.1404.5997 · Cited by 1,372 · cited 1×
“[14], [31] which efficiently trains the ConvNet by using GPU acceleration with the DropConnect modification by [28].”
MethodAccuracy of CT Colonography for Detection of Large Adenomas and Cancers
Johnson, C. D., Chen, M.-H., Toledano, A., Heiken, J., Dachman, A., Kuo, M. D., Menias, C., Siewert, B., Cheema, J. I. S., Obregon, R. G., et al. (2008) · New England Journal of Medicine · doi:10.1056/nejmoa0800996 · Cited by 1,180 · cited 1×
“In CT colonography (CTC), patients are typically scanned in the prone and supine positions [56], so we obtain two CT volumes per patient study.”
MethodMedical image classification with convolutional neural network
Li, Q., Cai, W., Wang, X., Zhou, Y., Feng, D. D., & Chen, M. (2014) · 2014 13th International Conference on Control Automation Robotics & Vision (ICARCV) · doi:10.1109/icarcv.2014.7064414 · Cited by 880 · cited 1×
“Additionally, recent work has shown how the implementation of ConvNets can substantially improve the performance of state-of-the-art CADe systems [19]–[22].”
BackgroundMulti-scale Convolutional Neural Networks for Lung Nodule Classification
Shen, W., Zhou, M., Yang, F., Yang, C., & Tian, J. (2015) · Lecture notes in computer science · doi:10.1007/978-3-319-19992-4_46 · Cited by 649 · cited 1×
“This strategy has been adapted to computer-aided pulmonary embolism detection ([52]), lung nodule classification ([11], [53]) in CT images and polyp detection in colonoscopy videos ([54], [55]).”
MethodComputer-aided detection and classification of microcalcifications in mammograms: a survey
Cheng, H.-D., Cai, X., Chen, X.-W., Hu, L.-M., & Lou, X. (2003) · Pattern Recognition · doi:10.1016/s0031-3203(03)00192-4 · Cited by 601 · cited 1×
“At present, examples of CADe used in clinical practice include polyp detection for colon cancer screening [9], [10], lung nodule detection for lung cancer screening [11], [12] or breast cancer screening with mammography [13].”
MethodDeep Feature Learning for Knee Cartilage Segmentation Using a Triplanar Convolutional Neural Network
Prasoon, A., Petersen, K., Igel, C., Lauze, F., Dam, E., & Nielsen, M. (2013) · Lecture Notes in Computer Science · doi:10.1007/978-3-642-40763-5_31 · Cited by 582 · cited 3×
“For instance, [19] proposes an MRI-based knee cartilage segmentation using a triplanar ConvNet.”
BackgroundMethodConvolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation
Turaga, S. C., Murray, J. F., Jain, V., Roth, F., Helmstaedter, M., Briggman, K., Denk, W., & Seung, H. S. (2010) · Neural Computation · doi:10.1162/neco.2009.10-08-881 · Cited by 376 · cited 4×
“Extensions of ConvNets to 3D have been proposed, but computational cost and memory consumption can be still too high to efficiently implement them on current computer graphics hardware units [23].”
BackgroundInfluentialRoth, H. R., Lu, L., Seff, A., Cherry, K. M., Hoffman, J., Wang, S., Liu, J., Turkbey, E., & Summers, R. M. (2014) · Lecture notes in computer science · doi:10.1007/978-3-319-10404-1_65 · Cited by 355 · cited 6×
“([20]), effectively circumvents the “curse-of-dimensionality” or “over-fitting” issue in the data-demanding ConvNet training procedures.”
BackgroundMethodInfluentialSelf-citationComputed tomographic virtual colonoscopy computer-aided polyp detection in a screening population.
Summers, R., Yao, J.-H., Pickhardt, P., Franaszek, M., Bitter, I., Brickman, D., Krishna, V., & Choi, J. R. (2005) · Gastroenterology · doi:10.1053/j.gastro.2005.08.054 · Cited by 316 · cited 10×
“There were 79 training and 173 testing polyps ; and 22 training and 37 testing polyps ( , considered as large polyps) in our CTC dataset [27].”
BackgroundMethodInfluentialSelf-citationvan Ginneken, B., Setio, A. A. A., Jacobs, C., & Ciompi, F. (2015) · 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) · doi:10.1109/isbi.2015.7163869 · Cited by 278 · cited 2×
“This strategy has been adapted to computer-aided pulmonary embolism detection ([52]), lung nodule classification ([11], [53]) in CT images and polyp detection in colonoscopy videos ([54], [55]).”
MethodGokturk, S., Tomasi, C., Acar, B., Beaulieu, C., Paik, D., Jeffrey, R. B. J., Yee, J., & Napel, S. (2001) · IEEE Transactions on Medical Imaging · doi:10.1109/42.974920 · Cited by 184 · cited 1×
“tions of each ROI—an approach similar to [32].”
MethodColonic polyps: complementary role of computer-aided detection in CT colonography.
Summers, R., Jerebko, A., Franaszek, M., Malley, J., & Johnson, C. D. (2002) · Radiology · doi:10.1148/radiol.2252011619 · Cited by 159 · cited 1×
“At present, examples of CADe used in clinical practice include polyp detection for colon cancer screening [9], [10], lung nodule detection for lung cancer screening [11], [12] or breast cancer screening with mammography [13].”
MethodSelf-citationComputer science: The learning machines
Jones, N. (2014) · Nature · doi:10.1038/505146a · Cited by 155 · cited 3×
“These automatically learned filters need no tuning by hand, a major advantage over more traditional CADe approaches [19].”
BackgroundInfluentialAutomated spinal column extraction and partitioning
Yao, J.-H., O'Connor, S., & Summers, R. (2006) · IEEE International Symposium on Biomedical Imaging · doi:10.1109/isbi.2006.1624935 · Cited by 148
Self-citationFirmino, M., Morais, A. H. F., Mendoça, R. M., Dantas, M. R., Hekis, H. R., & Valentim, R. A. M. (2014) · BioMedical Engineering OnLine · doi:10.1186/1475-925x-13-41 · Cited by 146 · cited 1×
“At present, examples of CADe used in clinical practice include polyp detection for colon cancer screening [9], [10], lung nodule detection for lung cancer screening [11], [12] or breast cancer screening with mammography [13].”
MethodBayesian multiple instance learning
Raykar, V. C., Krishnapuram, B., Bi, J., Dündar, M., & Rao, R. B. (2008) · International Conference on Machine Learning · doi:10.1145/1390156.1390258 · Cited by 134 · cited 2×
“This type of cascade classification is similar in spirit to our presented second tier deep classifier (ConvNet), but uses state-of-the-art shallow classifiers (libSVM [47] and sparse linear fusion via the Relevance Vector Machine [48]).”
ResultTajbakhsh, N., Gotway, M., & Liang, J. (2015) · International Conference on Medical Image Computing and Computer-Assisted Intervention · doi:10.1007/978-3-319-24571-3_8 · Cited by 129 · cited 1×
“This strategy has been adapted to computer-aided pulmonary embolism detection ([52]), lung nodule classification ([11], [53]) in CT images and polyp detection in colonoscopy videos ([54], [55]).”
MethodMechanisms of bone metastasis in prostate cancer: clinical implications
Msaouel, P., Pissimissis, N., Halapas, A., & Koutsilieris, M. (2008) · Best Practice & Research Clinical Endocrinology & Metabolism · doi:10.1016/j.beem.2008.01.011 · Cited by 120 · cited 1×
“Furthermore, detection can help to assess the staging of a patient's disease, and thus has the potential to alter a patient's required treatment regimen [2].”
BackgroundAutomatic Detection and Segmentation of Lymph Nodes From CT Data
Barbu, A., Suehling, M., Xu, X., Liu, D., Zhou, S. K., & Comaniciu, D. (2012) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2011.2168234 · Cited by 94 · cited 1×
“We use a soft-tissue window level of [-100, 200 HU] as in [44].”
MethodRoth, H. R., Yao, J.-H., Lu, L., Stieger, J., Burns, J. E., & Summers, R. (2014) · arXiv.org · doi:10.1007/978-3-319-14148-0_1 · Cited by 89
Self-citationComputer-Aided Detection of Polyps in CT Colonography Using Logistic Regression
van Ravesteijn, V. F., van Wijk, C., Vos, F., Truyen, R., Peters, J., Stoker, J., & van Vliet, L. (2010) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2009.2028576 · Cited by 76 · cited 2×
“At present, examples of CADe used in clinical practice include polyp detection for colon cancer screening [9], [10], lung nodule detection for lung cancer screening [11], [12] or breast cancer screening with mammography [13].”
BackgroundMethodFeulner, J., Kevin Zhou, S., Hammon, M., Hornegger, J., & Comaniciu, D. (2013) · Medical Image Analysis · doi:10.1016/j.media.2012.11.001 · Cited by 72 · cited 1×
“Note that this shallow linear cascade approach via new image features, such as Histogram of Oriented Gradients, already significantly surpasses previous state-of-the-art methods [45], [46], [49].”
BackgroundStratified learning of local anatomical context for lung nodules in CT images
Wu, D., Lü, L., Bi, J., Shinagawa, Y., Boyer, K. L., Krishnan, A. V., & Salganicoff, M. (2010) · IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings · doi:10.1109/cvpr.2010.5540008 · Cited by 69 · cited 2×
“, intensity statistics, histogram of oriented gradients (HoG) [6], scale-invariant feature transform (SIFT) [7], Hessian based shape descriptors (such as blobness) [8], etc.”
BackgroundSelf-citationA Comprehensive Computer-Aided Polyp Detection System for Colonoscopy Videos
Tajbakhsh, N., Gurudu, S., & Liang, J. (2015) · Information Processing in Medical Imaging · doi:10.1007/978-3-319-19992-4_25 · Cited by 68 · cited 1×
“This strategy has been adapted to computer-aided pulmonary embolism detection ([52]), lung nodule classification ([11], [53]) in CT images and polyp detection in colonoscopy videos ([54], [55]).”
MethodAutomated Detection of Sclerotic Metastases in the Thoracolumbar Spine at CT
Burns, J. E., Yao, J., Wiese, T., Munoz, H. E., Jones, E. C., & Summers, R. M. (2013) · Radiology · doi:10.1148/radiol.13121351 · Cited by 60 · cited 6×
“In this study, we use three existing CADe systems that have previously been described in the literature: Detection of Sclerotic Spine Metastases: We use a recent CADe method for detecting sclerotic metastases candidates from CT volumes [4], [33] (see Section III-D).”
BackgroundMethodInfluentialSelf-citation2D View Aggregation for Lymph Node Detection Using a Shallow Hierarchy of Linear Classifiers
Seff, A., Lü, L., Cherry, K. M., Roth, H. R., Liu, J., Wang, S., Hoffman, J., Turkbey, E. B., & Summers, R. M. (2014) · Lecture notes in computer science · doi:10.1007/978-3-319-10404-1_68 · Cited by 54 · cited 6×
“ConvNets have a better chance of capturing the “essence” of the imaging data set used for training than do hand-crafted features [16], [6]–[8].”
BackgroundMethodInfluentialSelf-citationAutomatic detection of lytic and blastic thoracolumbar spine metastases on computed tomography
Hammon, M., Dankerl, P., Tsymbal, A., Wels, M., Kelm, M., May, M., Suehling, M., Uder, M., & Cavallaro, A. (2013) · European Radiology · doi:10.1007/s00330-013-2774-5 · Cited by 54 · cited 1×
“Therefore CADe has the potential to greatly reduce the radiologists' clinical workload and to serve as a first or second reader for improved assessment of the disease [3]–[5].”
BackgroundA Robust and Fast System for CTC Computer-Aided Detection of Colorectal Lesions
Slabaugh, G., Yang, X.-Y., Ye, X.-J., Boyes, R., & Beddoe, G. (2010) · Algorithms · doi:10.3390/a3010021 · Cited by 45 · cited 7×
“The colonic polyp CADe dataset scales are similar: 770 tagged-prep CT scans from multiple medical sites (358 training and 412 validation) in [37], [40]; 180 patients (360 CTC volumes) for training and 202 patients (404 volumes) for testing [38].”
BackgroundMethodResultInfluentialA Statistical Parts-Based Model of Anatomical Variability
Toews, M., & Arbel, T. (2007) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2007.892510 · Cited by 41
Automatic mediastinal lymph node detection in chest CT
Feuerstein, M., Deguchi, D., Kitasaka, T., Iwano, S., Imaizumi, K., Hasegawa, Y., Suenaga, Y., & Mori, K. (2009) · Medical Imaging · doi:10.1117/12.811101 · Cited by 37 · cited 1×
“Note that this shallow linear cascade approach via new image features, such as Histogram of Oriented Gradients, already significantly surpasses previous state-of-the-art methods [45], [46], [49].”
BackgroundEmploying topographical height map in colonic polyp measurement and false positive reduction
Yao, J., Li, J., & Summers, R. M. (2008) · Pattern Recognition · doi:10.1016/j.patcog.2008.09.034 · Cited by 36 · cited 2×
“Potentially, the performance could be improved by adopting a local colonic surface alignment, such as [39], to further guide and constrain our random view sampling procedure.”
BackgroundMethodSelf-citationOptimizing the support vector machines (SVM) committee configuration in a colonic polyp CAD system
Yao, J.-H., Summers, R., & Hara, A. (2005) · SPIE Medical Imaging · doi:10.1117/12.594547 · Cited by 36 · cited 2×
“Last, a committee of SVMs [34] is trained on these features.”
BackgroundSelf-citationLiu, J., Zhao, J., Hoffman, J., Yao, J.-H., Zhang, W., Turkbey, E., Wang, S.-J., Kim, C. F., & Summers, R. (2014) · Medical Imaging · doi:10.1117/12.2043737 · Cited by 33 · cited 6×
“There are a total of 1956 true-positive detections from [26], [25].”
BackgroundMethodInfluentialSelf-citationEffective 3D object detection and regression using probabilistic segmentation features in CT images
Lü, L., Bi, J., Wolf, M., & Salganicoff, M. (2011) · Computer Vision and Pattern Recognition · doi:10.1109/cvpr.2011.5995359 · Cited by 31 · cited 6×
“The colonic polyp CADe dataset scales are similar: 770 tagged-prep CT scans from multiple medical sites (358 training and 412 validation) in [37], [40]; 180 patients (360 CTC volumes) for training and 202 patients (404 volumes) for testing [38].”
BackgroundMethodResultInfluentialSelf-citationAbdominal lymphadenopathy detection using random forest
Cherry, K. M., Wang, S.-J., Turkbey, E., & Summers, R. (2014) · Medical Imaging · doi:10.1117/12.2043837 · Cited by 25 · cited 9×
“There are a total of 1956 true-positive detections from [26], [25].”
BackgroundMethodInfluentialSelf-citationComputer aided lytic bone metastasis detection using regular CT images
Yao, J.-H., O'Connor, S., & Summers, R. (2006) · SPIE Medical Imaging · doi:10.1117/12.652288 · Cited by 25 · cited 1×
“Axial 2D cross sections of the vertebrae are then divided into sub-segments using a watershed algorithm based on local density differences [33].”
MethodSelf-citationComputer Aided Diagnosis Using Multilevel Image Features on Large-Scale Evaluation
Lü, L., Devarakota, P., Vikal, S., Wu, D., Zheng, Y., & Wolf, M. (2014) · Lecture notes in computer science · doi:10.1007/978-3-319-05530-5_16 · Cited by 24 · cited 6×
“The colonic polyp CADe dataset scales are similar: 770 tagged-prep CT scans from multiple medical sites (358 training and 412 validation) in [37], [40]; 180 patients (360 CTC volumes) for training and 202 patients (404 volumes) for testing [38].”
BackgroundMethodResultInfluentialSelf-citationDetection of sclerotic bone metastases in the spine using watershed algorithm and graph cut
Wiese, T., Yao, J.-H., Burns, J. E., & Summers, R. (2012) · Medical Imaging · doi:10.1117/12.911700 · Cited by 23 · cited 1×
“Therefore CADe has the potential to greatly reduce the radiologists' clinical workload and to serve as a first or second reader for improved assessment of the disease [3]–[5].”
BackgroundSelf-citationA Two-Level Approach Towards Semantic Colon Segmentation: Removing Extra-Colonic Findings
Lu, L., Wolf, M., Liang, J., Dundar, M., Bi, J., & Salganicoff, M. (2009) · International Conference on Medical Image Computing and Computer-Assisted Intervention · doi:10.1007/978-3-642-04271-3_122 · Cited by 21 · cited 1×
“There exist two types of cascaded CADe classification architectures for false positive reduction are two types: 1) extraction of new image features followed by retraining of a classifier on all candidates [39], [38], [6], [20], [40] (from Section II-D) or 2) design of application dependent post-filtering components [4…”
MethodSelf-citationCoarse-to-fine classification via parametric and nonparametric models for computer-aided diagnosis
Lu, L., Liu, M., Ye, X.-J., Yu, S.-P., & Huang, H. (2011) · International Conference on Information and Knowledge Management · doi:10.1145/2063576.2064004 · Cited by 18 · cited 1×
“This is a coarse-to-fine classification approach slightly inspired by other CADe schemes such as presented in [24] although our methods are significantly different.”
MethodSelf-citationSimultaneous Detection and Registration for Ileo-Cecal Valve Detection in 3D CT Colonography
Lü, L., Barbu, A., Wolf, M., Liang, J., Bogoni, L., Salganicoff, M., & Comaniciu, D. (2008) · Lecture notes in computer science · doi:10.1007/978-3-540-88693-8_34 · Cited by 17 · cited 1×
“3D flexible tubes [41], ileo-cecal valve [42] and extra-colonic”
Self-citationWiese, T., Burns, J. E., Yao, J.-H., & Summers, R. (2011) · IEEE International Symposium on Biomedical Imaging · doi:10.1109/isbi.2011.5872376 · Cited by 17 · cited 1×
“In this study, we use three existing CADe systems that have previously been described in the literature: Detection of Sclerotic Spine Metastases: We use a recent CADe method for detecting sclerotic metastases candidates from CT volumes [4], [33] (see Section III-D).”
MethodSelf-citationNakamura, Y., Nimura, Y., Kitasaka, T., Mizuno, S., Furukawa, K., Goto, H., Fujiwara, M., Misawa, K., Ito, M., Nawano, S., et al. (2013) · Medical Imaging · doi:10.1117/12.2008282 · Cited by 12 · cited 2×
“In the abdomen, the most recent work ([46]) shows a 70.”
BackgroundHierarchical Part-Based Detection of 3D Flexible Tubes: Application to CT Colonoscopy
Barbu, A., Bogoni, L., & Comaniciu, D. (2006) · Lecture notes in computer science · doi:10.1007/11866763_57 · Cited by 9 · cited 2×
“3D flexible tubes [41], ileo-cecal valve [42] and extra-colonic”
MethodSrivastava (2014) · doi:10.5555/2627435.2670313 · cited 1×
“It is a variation of the previously suggested “DropOut” method [29], [30].”
Method
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Cited by
Sorted by citations
A survey on deep learning in medical image analysis
Litjens, G., Kooi, T., Bejnordi, B. E., Setio, A. A. A., Ciompi, F., Ghafoorian, M., van der Laak, J. A. W. M., van Ginneken, B., & Sánchez, C. I. (2017) · Medical Image Analysis · doi:10.1016/j.media.2017.07.005 · Cited by 15,332
“The incorpora- ion of contextual or 3D information is also handled using multi- tream CNNs ( Section 2.4.2 , for example by Barbu et al., 2016 and oth et al., 2016b ).”
MethodInfluentialShin, H.-C., Roth, H. R., Gao, M., Lu, L., Xu, Z., Nogues, I., Yao, J., Mollura, D., & Summers, R. M. (2016) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2016.2528162 · Cited by 5,759
Self-citationDeep learning in medical image analysis
Shen, D., Wu, G., & Suk, H.-I. (2017) · Annual Review of Biomedical Engineering · doi:10.1146/annurev-bioeng-071516-044442 · Cited by 4,968
“…generating samples via affine transformation (i.e., data augmentation) and then train their network from scratch with the augmented dataset (35, 36, 37, 38); (iii) to use deep models trained over a huge number of natural images in computer vision as ‘off-the-shelf’ feature extractor and then…”
MethodOpportunities and obstacles for deep learning in biology and medicine
Ching, T., Himmelstein, D. S., Beaulieu-Jones, B. K., Kalinin, A. A., Do, B. T., Way, G. P., Ferrero, E., Agapow, P.-M., Zietz, M., Hoffman, M. M., et al. (2018) · Journal of The Royal Society Interface · doi:10.1098/rsif.2017.0387 · Cited by 2,310
Deep Learning for Health Informatics
Ravì, D., Wong, C., Deligianni, F., Berthelot, M., Andreu-Perez, J., Lo, B., & Yang, G.-Z. (2017) · IEEE Journal of Biomedical and Health Informatics · doi:10.1109/jbhi.2016.2636665 · Cited by 2,000
“Implicit features could determine fibroids and polyps [1], and characterize irregularities in tissue morphology such as tumors [2].”
Background
Metadata
- Authors
- Roth, H. R., Lu, L., Liu, J., Yao, J., Seff, A., Cherry, K., Kim, L., & Summers, R. M.
- Affiliations
- National Institutes of Health Clinical Center (US)
- Venue
- IEEE Transactions on Medical Imaging
- Published
- 2016-05
- Volume
- 35
- Issue
- 5
- Pages
- 1170-1181
- ISSN
- 0278-0062 (ISSN-L)
- 1558-254X
- PMC
- PMC7340334
- OpenAlex
- W1871050032
- Cited by
- 608
- References
- 60
- Citations by year
- 2026: 14 · 2025: 19 · 2024: 35 · 2023: 34 · 2022: 72 · 2021: 101 · 2020: 88 · 2019: 84 · 2018: 71 · 2017: 62 · 2016: 27
- FWCI
- 52.62
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- IEEE Transactions on Medical Imaging (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- arXiv (Cornell University) (submittedVersion)
- arXiv (Cornell University) (public-domain)
- Funders
- National Institutes of Health
- NIH Clinical Center (Z01CL040004, Z01CL040003)
- Topics
- Physical Sciences › Computer Science › Artificial Intelligence › AI in cancer detection
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Radiomics and Machine Learning in Medical Imaging
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Advanced Neural Network Applications
- Keywords
- computer-aided detection, false positive reduction, convolutional neural networks, lymph node detection, colorectal polyp detection, scale transformation
- MeSH terms
- Machine Learning, Adolescent, Adult, Aged, Child, Colonic Polyps, Female, Humans, Lymph Nodes, Male, Middle Aged, Radiographic Image Interpretation, Computer-Assisted, Spinal Neoplasms, Tomography, X-Ray Computed, Databases, Factual, Neural Networks, Computer, Young Adult
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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