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Nitrate regulation of anaerobic respiratory gene expression in Escherichia coli
Abstract
Synthesis of most anaerobic respiratory pathways is subject to dual regulation by anaerobiosis and nitrate. Anaerobic induction is mediated by the FNR protein. Dual interacting two-component regulatory systems mediate nitrate induction and repression. The response regulator protein NARL binds DNA to control nitrate induction and repression of genes encoding nitrate respiration enzymes and alternate anaerobic respiratory enzymes, respectively. The homologous protein NARP controls nitrite induction of at least two operons. Nitrate and nitrite signalling are both mediated by the homologous sensor proteins NARX and NARQ. Recent mutational analyses have defined a heptamer sequence necessary for specific DNA binding by the NARL protein. These heptamers are located at different positions in the control regions of different operons. The NARL protein-binding sites in the narG (nitrate reductase) and narK (nitrate-nitrite antiporter) operon control regions are located approximately 200bp upstream of the transcription initiation site. The integration host factor (IHF) greatly stimulates nitrate induction of these operons, indicating that a specific DNA loop brings NARL protein, bound at the upstream region, into the proximity of the promoter for transcription activation. Other NARL protein-dependent opersons do not require IHF for nitrate induction, and the arrangement of NARL heptamer sequences in these control regions is quite different. This complexity of signal transduction pathways, coupled with the diversity of control region architecture, combine to provide many interesting areas for future investigation. An additional challenge is to determine how or if the FNR and NARL proteins interact to mediate dual positive control of transcription initiation.
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“Comparatively, while the DNRA nitrate reductase, nap, shares some regulatory elements with nar such as the oxygen-dependent FNR[77,256,261–264]”
From Enterosalivary nitrate metabolism and the microbiome: Intersection of microbial metabolism, nitric oxide and diet in cardiac and pulmonary vascular health (2017) · cites this paper as [262]
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Metadata
- Authors
- Stewart, V.
- Affiliations
- Cornell University (US)
- Corresponding author
- Stewart, Valley
- ORCID
- Stewart, Valley
- Venue
- Molecular Microbiology
- Publisher
- Wiley
- Published
- 1993-08
- Volume
- 9
- Issue
- 3
- Pages
- 425-434
- ISSN
- 0950-382X (ISSN-L)
- 1365-2958
- OpenAlex
- W2099926472
- Cited by
- 176
- References
- 57
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 5 · 2022: 5 · 2021: 2 · 2020: 4 · 2019: 6 · 2018: 1 · 2017: 2 · 2016: 5 · 2015: 5 · 2014: 3 · 2013: 3 · 2012: 5
- FWCI
- 2.46
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Molecular Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Keywords
- nitrate regulation, anaerobic respiration, Escherichia coli, NarL, NARP, NARX network, FNR, two-component systems, nitrate reductase, integration host factor, transcriptional regulation, dual regulation
- MeSH terms
- Nitrate Transporters, Anaerobiosis, Bacterial Proteins, Carrier Proteins, DNA-Binding Proteins, Escherichia coli, Genes, Bacterial, Iron-Sulfur Proteins, Nitrate Reductases, Nitrates, Oxygen Consumption, Gene Expression Regulation, Bacterial, Anion Transport Proteins, Escherichia coli Proteins, Nitrate Reductase
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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What counts as a claim ›How we measure confidence ›How we check this ›
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