Fluoresceination of FepA during colicin B killing: effects of temperature, toxin and TonB
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Summary: We studied the reactivity of 35 genetically engineered Cys sulphydryl groups at different locations in Escherichia coli FepA. Modification of surface loop residues by fluorescein maleimide (FM) was strongly temperature‐dependent in vivo, whereas reactivity at other sites was much less affected. Control reactions with bovine serum albumin showed that the temperature dependence of loop residue reactivity was unusually high, indicating that conformational changes in multiple loops (L2, L3, L4, L5, L7, L8, L10) transform the receptor to a more accessible form at 37°C. At 0°C colicin B binding impaired or blocked labelling at 8 of 10 surface loop sites, presumably by steric hindrance. Overall, colicin B adsorption decreased the reactivity of more than half of the 35 sites, in both the N‐ and C‐ domains of FepA. However, colicin B penetration into the cell at 37°C did not augment the chemical modification of any residues in FepA. The FM modification patterns were similarly unaffected by the tonB locus. FepA was expressed at lower levels in a tonB host strain, but when we accounted for this decrease its FM labelling was comparable whether TonB was present or absent. Thus we did not detect TonB‐dependent structural changes in FepA, either alone or when it interacted with colicin B at 37°C. The only changes in chemical modification were reductions from steric hindrance when the bacteriocin bound to the receptor protein. The absence of increases in the reactivity of N‐domain residues argues against the idea that the colicin B polypeptide traverses the FepA channel.
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Cites
Crystal structures explain functional properties of two E. coli porins
Cowan, S. W., Schirmer, T., Rummel, G., Steiert, M., Ghosh, R., Pauptit, R. A., Jansonius, J. N., & Rosenbusch, J. P. (1992) · Nature · doi:10.1038/358727a0 · Cited by 1,521 · see citing works
Sims, P. J., Waggoner, A. S., Wang, C.-H., & Hoffman, J. F. (1974) · Biochemistry · doi:10.1021/bi00713a022 · Cited by 952 · see citing works
Siderophore-Mediated Iron Transport: Crystal Structure of FhuA with Bound Lipopolysaccharide
Ferguson, A. D., Hofmann, E., Coulton, J. W., Diederichs, K., & Welte, W. (1998) · Science · doi:10.1126/science.282.5397.2215 · Cited by 787 · see citing works
Resolution of Bacterial Proteins by Polyacrylamide Gel Electrophoresis on Slabs
Ames, G. F. (1974) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)43074-3 · Cited by 753 · see citing works
Takeshita, S., Sato, M., Toba, M., Masahashi, W., & Hashimoto-Gotoh, T. (1987) · Gene · doi:10.1016/0378-1119(87)90365-9 · Cited by 695 · see citing works
Crystal structure of the outer membrane active transporter FepA from Escherichia coli.
Buchanan (1999) · Nature Structural Biology · doi:10.1038/4931 · Cited by 591 · see citing works
Molecular basis of bacterial outer membrane permeability
Nikaido, H., & Vaara, M. (1985) · Microbiological Reviews · doi:10.1128/mr.49.1.1-32.1985 · Cited by 553 · see citing works
Transmembrane Signaling across the Ligand-Gated FhuA Receptor
Locher, K. P., Rees, B., Koebnik, R., Mitschler, A., Moulinier, L., Rosenbusch, J. P., & Moras, D. (1998) · Cell · doi:10.1016/s0092-8674(00)81700-6 · Cited by 540 · see citing works
Gerding, M. A., Ogata, Y., Pecora, N., Niki, H., & de Boer, P. D. (2007) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05571.x · Cited by 380 · see citing works
Structural basis of gating by the outer membrane transporter FecA
Ferguson, A. D., Chakraborty, R., Smith, B. S., Esser, L., van der Helm, D., & Deisenhofer, J. (2002) · Science · doi:10.1126/science.1067313 · Cited by 373 · see citing works
Davies, J. K., & Reeves, P. R. (1975) · Journal of Bacteriology · doi:10.1128/jb.123.1.102-117.1975 · Cited by 351 · see citing works
Kinetics for the Life Sciences
Gutfreund, H. (1995) · Cambridge University Press eBooks · doi:10.1017/cbo9780511626203 · Cited by 336 · see citing works
Outer Membrane Active Transport: Structure of the BtuB:TonB Complex
Shultis, D., Purdy, M. D., Banchs, C. N., & Wiener, M. C. (2006) · Science · doi:10.1126/science.1127694 · Cited by 303 · see citing works
Structure of TonB in Complex with FhuA, E. coli Outer Membrane Receptor
Pawelek, P. D., Croteau, N., Ng‐Thow‐Hing, C., Khursigara, C. M., Moiseeva, N., Allaire, M., & Coulton, J. W. (2006) · Science · doi:10.1126/science.1128057 · Cited by 273 · see citing works
Nikaido, H., & Rosenberg, E. Y. (1981) · The Journal of General Physiology · doi:10.1085/jgp.77.2.121 · Cited by 232 · see citing works
TonB protein and energy transduction between membranes
Postle, K. (1993) · Journal of Bioenergetics and Biomembranes · doi:10.1007/bf00770246 · Cited by 217 · see citing works
The proton motive force drives the outer membrane transport of cobalamin in Escherichia coli
Bradbeer, C. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.10.3146-3150.1993 · Cited by 188 · see citing works
Hashimoto-Gotoh, T., Franklin, F. C. H., Nordheim, A., & Timmis, K. N. (1981) · Gene · doi:10.1016/0378-1119(81)90079-2 · Cited by 188 · see citing works
Davies, J. K., & Reeves, P. R. (1975) · Journal of Bacteriology · doi:10.1128/jb.123.1.96-101.1975 · Cited by 186 · see citing works
Crystal structures of the OmpF porin: function in a colicin translocon
Yamashita, E., Zhalnina, M. V., Zakharov, S. D., Sharma, O., & Cramer, W. A. (2008) · The EMBO Journal · doi:10.1038/emboj.2008.137 · Cited by 152 · see citing works
Reynolds, P. R., Mottur, G. P., & Bradbeer, C. (1980) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)85667-3 · Cited by 142 · see citing works
Siderophore protection against colicins M, B, V, and Ia in Escherichia coli
Wayne, R. R., Frick, K., & Neilands, J. B. (1976) · Journal of Bacteriology · doi:10.1128/jb.126.1.7-12.1976 · Cited by 125 · see citing works
Kinetics for the life sciences: receptors, transmitters and catalysts
(1996) · Choice Reviews Online · doi:10.5860/choice.33-5084 · Cited by 123 · see citing works
Surface topology of the Escherichia coli K-12 ferric enterobactin receptor
Murphy, C. K., Kalve, V. I., & Klebba, P. E. (1990) · Journal of Bacteriology · doi:10.1128/jb.172.5.2736-2746.1990 · Cited by 115 · see citing works
Self-citationBénédetti, H., Lloubès, R., Lazdunski, C. J., & Letellìer, L. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05073.x · Cited by 115 · see citing works
Structure of colicin I receptor bound to the R‐domain of colicin Ia: implications for protein import
Buchanan, S. K., Lukacik, P., Grizot, S., Ghirlando, R., Ali, M. M. U., Barnard, T. J., Jakes, K. S., Kienker, P. K., & Esser, L. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601693 · Cited by 113 · see citing works
Mechanics of Force Propagation in TonB-Dependent Outer Membrane Transport
Gumbart, J. C., Wiener, M. C., & Tajkhorshid, E. (2007) · Biophysical Journal · doi:10.1529/biophysj.107.104158 · Cited by 105 · see citing works
Bouveret, E., Bénédetti, H., Rigal, A., Loret, E. P., & Lazdunski, C. J. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.20.6306-6311.1999 · Cited by 97 · see citing works
FepA- and TonB-Dependent Bacteriophage H8: Receptor Binding and Genomic Sequence
Rabsch, W., Ma, L. M., Wiley, G. B., Najar, F. Z., Kaserer, W. A., Schürch, D., Klebba, J. E., Roe, B. A., Gomez, J. A. L., Schallmey, M., et al. (2007) · Journal of Bacteriology · doi:10.1128/jb.00437-07 · Cited by 95 · see citing works
Self-citationIron uptake in colicin B-resistant mutants of Escherichia coli K-12
Pugsley, A. P., & Reeves, P. R. (1976) · Journal of Bacteriology · doi:10.1128/jb.126.3.1052-1062.1976 · Cited by 94 · see citing works
An Additional Step in the Transport of Iron Defined by the tonB Locus of Escherichia coli
Wang, C. C., & Newton, A. (1971) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)77201-9 · Cited by 93 · see citing works
Ligand-Specific Opening of a Gated-Porin Channel in the Outer Membrane of Living Bacteria
Jiang, X., Payne, M. A., Cao, Z., Foster, S. B., Feix, J. B., Newton, S. M. C., & Klebba, P. E. (1997) · Science · doi:10.1126/science.276.5316.1261 · Cited by 92 · see citing works
Self-citationEffect of loop deletions on the binding and transport of ferric enterobactin by FepA
Newton, S. M. C., Igo, J. D., Scott, D. C., & Klebba, P. E. (1999) · Molecular Microbiology · doi:10.1046/j.1365-2958.1999.01424.x · Cited by 91 · see citing works
Self-citationExcretion of Enterochelin by exbA and exbB Mutants of Escherichia coli
Guterman, S. K., & Dann, L. (1973) · Journal of Bacteriology · doi:10.1128/jb.114.3.1225-1230.1973 · Cited by 89 · see citing works
Mechanisms of colicin binding and transport through outer membrane porins
Cao, Z., & Klebba, P. E. (2002) · Biochimie · doi:10.1016/s0300-9084(02)01455-4 · Cited by 89 · see citing works
Self-citationCascalès, E., & Lloubès, R. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03881.x · Cited by 85 · see citing works
Evidence of Ball-and-chain Transport of Ferric Enterobactin through FepA
Ma, L., Kaserer, W., Annamalai, R., Scott, D. C., Jin, B., Jiang, X., Xiao, Q., Maymani, H., Massis, L. M., Ferreira, L. C. S., et al. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m605333200 · Cited by 84 · see citing works
Self-citationFamilies of Proteins Forming Transmembrane Channels
M.H. Saier (2000) · The Journal of Membrane Biology · doi:10.1007/s00232001065 · Cited by 82 · see citing works
Iron Transport in Escherichia coli: Roles of Energy-dependent Uptake and 2,3-Dihydroxybenzoylserine
Wang, C. C., & Newton, A. (1969) · Journal of Bacteriology · doi:10.1128/jb.98.3.1142-1150.1969 · Cited by 80 · see citing works
Recognition of Ferric Catecholates by FepA
Annamalai, R., Jin, B., Cao, Z., Newton, S. M. C., & Klebba, P. E. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.11.3578-3589.2004 · Cited by 73 · see citing works
Self-citationFamilies of Proteins Forming Transmembrane Channels
Saier, M. H. (2000) · The Journal of Membrane Biology · doi:10.1007/s002320001065 · Cited by 72 · see citing works
Goemaere, E. L., Cascalès, E., & Lloubès, R. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.12.020 · Cited by 67 · see citing works
ON THE MECHANISMS OF ACTION OF COLICINS.
LURIA, S. E. (1964) · PubMed · Cited by 65 · see citing works
Biphasic Binding Kinetics between FepA and Its Ligands
Payne, M. A., Igo, J. D., Cao, Z., Foster, S. B., Newton, S. M. C., & Klebba, P. E. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.35.21950 · Cited by 59 · see citing works
Self-citationStudies on colicin B translocation: FepA is gated by TonB
Devanathan, S., & Postle, K. (2007) · Molecular Microbiology · doi:10.1111/j.1365-2958.2007.05808.x · Cited by 57 · see citing works
McIntosh, M. A., & Earhart, C. F. (1976) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(76)91144-x · Cited by 53 · see citing works
Outer membrane-dependent transport systems in Escherichia coli: turnover of TonB function
Kadner, R. J., & McElhaney, G. (1978) · Journal of Bacteriology · doi:10.1128/jb.134.3.1020-1029.1978 · Cited by 53 · see citing works
Insight from TonB Hybrid Proteins into the Mechanism of Iron Transport through the Outer Membrane
Kaserer, W. A., Jiang, X., Xiao, Q., Scott, D. C., Bauler, M. N., Copeland, D., Newton, S. M. C., & Klebba, P. E. (2008) · Journal of Bacteriology · doi:10.1128/jb.00135-08 · Cited by 51 · see citing works
Self-citationUptake of ferrienterochelin by Escherichia coli: energy dependent stage of uptake
Pugsley, A. P., & Reeves, P. R. (1977) · Journal of Bacteriology · doi:10.1128/jb.130.1.26-36.1977 · Cited by 50 · see citing works
Weyn, B., van de Wouwer, G., Kumar‐Singh, S., van Daele, A., Scheunders, P., Marck, E. V., & Jacob, W. A. (1999) · Cytometry · doi:10.1002/(sici)1097-0320(19990101)35:1 · Cited by 48 · see citing works
Liu, J., Rutz, J. M., Klebba, P. E., & Feix, J. B. (1994) · Biochemistry · doi:10.1021/bi00249a014 · Cited by 47 · see citing works
Self-citationAromatic components of two ferric enterobactin binding sites in <i>Escherichia coli</i> FepA
Cao, Z., Qi, Z., Sprencel, C., Newton, S. M. C., & Klebba, P. E. (2000) · Molecular Microbiology · doi:10.1046/j.1365-2958.2000.02093.x · Cited by 45 · see citing works
Self-citationProbing the Transmembrane Potential of Bacterial Cells by Voltage-Sensitive Dyes
Suzuki, H. R., Wang, Z., Yamakoshi, M., et al. (2003) · Analytical Sciences · doi:10.2116/analsci.19.1239 · Cited by 44 · see citing works
Spectroscopic Observations of Ferric Enterobactin Transport
Cao, Z., Warfel, P., Newton, S. M. C., & Klebba, P. E. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m210360200 · Cited by 39 · see citing works
Self-citationScott, D. C., Newton, S. M. C., & Klebba, P. E. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.17.4906-4911.2002 · Cited by 35 · see citing works
Self-citationPommier, S., Gavioli, M., Cascalès, E., et al. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.21.7526-7534.2005 · Cited by 27 · see citing works
James, K. J., Hancock, M. A., Moreau, V., Molina, F., & Coulton, J. W. (2008) · Protein Science · doi:10.1110/ps.036244.108 · Cited by 19 · see citing works
Zakharov, S. D., Sharma, O., Zhalnina, M. V., et al. (2008) · Biochemistry · doi:10.1021/bi800865h · Cited by 18 · see citing works
Flagged first, then by citations
Research works printed but not linked: 3
- Buchanan SK Smith BS Venkatramani L Xia D Esser L Palnitkar M Chakraborty R van der Helm D Deisenhofer J Nat Struct Biol 1999 6 56 63 9886293
- Davies JK Reeves P J Bacteriol 1975 123 96 101 124727 PMC235695
- Luria SE Ann Inst Pasteur (Paris) 1964 107 SUPPL 67 73 14240526
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- Authors
- Smallwood, C. R., Marco, A. G., Xiao, Q., Trinh, V., Newton, S. M. C., & Klebba, P. E.
- Affiliations
- University of Oklahoma (US)
- Corresponding author
- Klebba, Phillip E.
- Venue
- Molecular Microbiology
- Publisher
- Wiley
- Published
- 2009-05-22
- Volume
- 72
- Issue
- 5
- Pages
- 1171-1180
- ISSN
- 0950-382X (ISSN-L)
- 1365-2958
- PMC
- PMC3082853
- OpenAlex
- W2136538003
- Semantic Scholar
- b277dba4c357951e7bad07c94d4e62c8c0272dc3
- Cited by
- 24
- References
- 58
- Citations by year
- 2026: 1 · 2024: 1 · 2022: 1 · 2021: 1 · 2020: 1 · 2017: 2 · 2016: 1 · 2014: 4 · 2013: 3 · 2012: 2
- FWCI
- 1.75
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Molecular Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- National Institute of General Medical Sciences (GM 53836, R01GM053836)
- Division of Molecular and Cellular Biosciences
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Endocrinology › Escherichia coli research studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Structural Characterization
- Keywords
- FepA, colicin B, TonB, Escherichia coli, temperature-dependent conformational change, steric hindrance, toxin binding, TonB-dependent receptors
- MeSH terms
- Bacterial Outer Membrane Proteins, Carrier Proteins, Colicins, Escherichia coli, Fluoresceins, Fluorescence, Membrane Proteins, Protein Binding, Receptors, Cell Surface, Temperature, Mutagenesis, Site-Directed, Protein Transport, Escherichia coli Proteins
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