The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
Stress‐induced changes in the Arabidopsis thaliana transcriptome analyzed using whole‐genome tiling arrays
Abstract
Summary: The responses of plants to abiotic stresses are accompanied by massive changes in transcriptome composition. To provide a comprehensive view of stress‐induced changes in the Arabidopsis thaliana transcriptome, we have used whole‐genome tiling arrays to analyze the effects of salt, osmotic, cold and heat stress as well as application of the hormone abscisic acid (ABA), an important mediator of stress responses. Among annotated genes in the reference strain Columbia we have found many stress‐responsive genes, including several transcription factor genes as well as pseudogenes and transposons that have been missed in previous analyses with standard expression arrays. In addition, we report hundreds of newly identified, stress‐induced transcribed regions. These often overlap with known, annotated genes. The results are accessible through the Arabidopsis thaliana Tiling Array Express (At‐TAX) homepage, which provides convenient tools for displaying expression values of annotated genes, as well as visualization of unannotated transcribed regions along each chromosome.
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Mapping and quantifying mammalian transcriptomes by RNA-Seq
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., & Wold, B. (2008) · Nature Methods · doi:10.1038/nmeth.1226 · Cited by 13,696
Reactive oxygen species: Metabolism, oxidative stress, and signal transduction
Apel, K., & Hirt, H. (2004) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.55.031903.141701 · Cited by 11,723
<tt>BLAT</tt> —The <tt>BLAST</tt> -Like Alignment Tool
Kent, W. J. (2002) · Genome Research · doi:10.1101/gr.229202 · Cited by 8,480
Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters
Yamaguchi-Shinozaki, K., & Shinozaki, K. (2005) · Trends in Plant Science · doi:10.1016/j.tplants.2004.12.012 · Cited by 1,458
LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana
Hundertmark, M., & Hincha, D. K. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-118 · Cited by 1,044
Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells
Ghildiyal, M., Seitz, H., Horwich, M. D., Li, C., Du, T., Lee, S., Xu, J., Kittler, E. L. W., Zapp, M. L., Weng, Z., et al. (2008) · Science · doi:10.1126/science.1157396 · Cited by 645
Strategies and tools for whole-genome alignments
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Cited by
Abscisic Acid: Emergence of a Core Signaling Network
Cutler, S. R., Rodriguez, P. L., Finkelstein, R. R., & Abrams, S. R. (2010) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042809-112122 · Cited by 3,151
Vogt, T. (2010) · Molecular Plant · doi:10.1093/mp/ssp106 · Cited by 3,072
Effects of abiotic stress on plants: a systems biology perspective
Cramer, G. R., Urano, K., Delrot, S., Pezzotti, M., & Shinozaki, K. (2011) · BMC Plant Biology · doi:10.1186/1471-2229-11-163 · Cited by 1,375
Kim, T.-H., Böhmer, M., Hu, H., Nishimura, N., & Schroeder, J. I. (2010) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042809-112226 · Cited by 1,357
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
Cheng, C., Krishnakumar, V., Chan, A. P., Thibaud‐Nissen, F., Schobel, S., & Town, C. D. (2017) · The Plant Journal · doi:10.1111/tpj.13415 · Cited by 1,317
Metadata
- Authors
- Zeller, G., Henz, S. R., Widmer, C. K., Sachsenberg, T., Rätsch, G., Weigel, D., & Laubinger, S.
- Venue
- The Plant Journal
- Publisher
- Wiley
- Published
- 2009-06
- Volume
- 58
- Issue
- 6
- Pages
- 1068-1082
- ISSN
- 0960-7412 (ISSN-L)
- 1365-313X
- OpenAlex
- W2139808116
- Cited by
- 306
- References
- 7
- FWCI
- 36.27
- Type
- journal article
- Language
- en
- Open access
- closed
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- Zeller, G., Henz, S. R., Widmer, C. K., Sachsenberg, T., Rätsch, G., Weigel, D., & Laubinger, S. (2009). Stress‐induced changes in the Arabidopsis thaliana transcriptome analyzed using whole‐genome tiling arrays. The Plant Journal. https://doi.org/10.1111/j.1365-313x.2009.03835.x
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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