Cited by 324Gut microbiota and healthMicrobial Community Ecology and PhysiologyOral microbiology and periodontitis research

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High temporal and inter‐individual variation detected in the human ileal microbiota

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Booijink, Carien C. G. M., El‐Aidy, Sahar, Rajilić‐Stojanović, Mirjana, Heilig, Hans G. H. J., Troost, Freddy J., Smidt, Hauke, Kleerebezem, Michiel, De Vos, Willem M., Zoetendal, Erwin G.·2010·Environmental Microbiology

DOI 10.1111/j.1462-2920.2010.02294.x

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Abstract

Summary: The diversity and temporal stability of the predominant bacteria in the human ileum was studied with the use of ileal effluent samples of seven individuals with Brooke ileostomies. The total number of bacteria within the ileal effluent was in the range of 10 7 –10 8 bacteria per gram (wet weight). The diversity of the bacteria in the ileal effluent showed marked differences compared with that in faecal samples from age‐matched healthy adults. The ileal effluent had a higher relative abundance of species within the orders Lactobacillales and Clostridiales , mainly Streptococcus bovis ‐related species, and the Veillonella group, and a lower proportion of species related to Ruminococcus gnavus , R. obeum and Bacteroides plebeius . In addition, inter‐individual differences were found, indicative of a highly personal ileal microbiota profile. Furthermore, temporal profiles showed large fluctuations per individual over a period of 9–28 days (average similarity over a period of 9 days was as low as 44%), and differences between morning and afternoon profiles were observed. Parallel cloning and sequencing efforts revealed several phylotypes that were not identified in previous studies (12 out of 65 phylotypes showed less than 97% sequence similarity with previously reported sequences). Achaea were found to be below detection limit by quantitative PCR. Overall, the results indicate that the microbiota of the human ileum is relatively unstable, less complex and consisting of different dominating phylotypes when compared with the colonic microbiota.

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“Enrichment of these genera is in line with literature regarding microbial composition of ileostomy effluent which has often been used as a proxy for investigating the ileal community (Collado et al., 2007; Booijink et al., 2010; van den Bogert et al., 2011, 2013; Zoetendal et al., 2012; Dlugosz et al., 2015; El Aidy e…”
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Increases in Colonic Bacterial Diversity after ω-3 Fatty Acid Supplementation Predict Decreased Colonic Prostaglandin E2 Concentrations in Healthy Adults
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Self-citation

Authors: Booijink, C. C. G. M., El‐Aidy, S., Rajilić‐Stojanović, M., Heilig, H. G. H. J., Troost, F. J., Smidt, H., Kleerebezem, M., De Vos, W. M., & Zoetendal, E. G.
Affiliations: TiFN (NL)
Wageningen University & Research (NL)
Maastricht University Medical Centre (NL)
Corresponding author: Zoetendal, Erwin G.
ORCID: Heilig, Hans G. H. J.
Troost, Freddy J.
Smidt, Hauke
Kleerebezem, Michiel
Zoetendal, Erwin G.
Venue: Environmental Microbiology
Publisher: Wiley
Published: 2010-12
Volume: 12
Issue: 12
Pages: 3213-3227
ISSN: 1462-2912 (ISSN-L)
1462-2920
DOI: 10.1111/j.1462-2920.2010.02294.x
OpenAlex: W2130329894
Cited by: 324
References: 52
Citations by year: 2026: 9 · 2025: 13 · 2024: 17 · 2023: 27 · 2022: 22 · 2021: 23 · 2020: 30 · 2019: 29 · 2018: 24 · 2017: 17 · 2016: 10 · 2015: 15 · 2014: 24 · 2013: 28 · 2012: 18
FWCI: 8.31
Type: journal article
Language: en
Open access: green
research.wur.nl
Licence: onlinelibrary.wiley.com/termsAndConditions#vor (vor, 2 d)
Locations: Environmental Microbiology (publishedVersion)
PubMed (publishedVersion)
TechnoRep (University of Belgrade – Faculty of Technology and Metallurgy) (publishedVersion)
Research Publications (Maastricht University) (publishedVersion)
Socio-Environmental Systems Modeling (acceptedVersion)
Research Publications (Maastricht University) (submittedVersion)
Data Archiving and Networked Services (DANS) (submittedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
Keywords: ileal microbiota, ileostomy, temporal stability, interindividual variability, bacterial diversity, Lactobacillales, Clostridiales, Streptococcus bovis, Veillonella, Ruminococcus, Bacteroides plebeius, Achaea, novel phylotypes, human gut bacteria
MeSH terms: Adult, Aged, Bacteria, Feces, Female, Humans, Ileostomy, Ileum, Male, Middle Aged, Molecular Sequence Data, Phylogeny, Time Factors, Case-Control Studies, Polymerase Chain Reaction, Genes, rRNA, Metagenome

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High temporal and inter‐individual variation detected in the human ileal microbiota

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