The DOI matches its Crossref record; 63 of the 63 references it cites were found in a registry or an index.
Genome‐wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus
Open accessAbstract
Salicin-based phenolic glycosides, hydroxycinnamate derivatives and flavonoid-derived condensed tannins comprise up to one-third of Populus leaf dry mass. Genes regulating the abundance and chemical diversity of these substances have not been comprehensively analysed in tree species exhibiting this metabolically demanding level of phenolic metabolism. Here, shikimate-phenylpropanoid pathway genes thought to give rise to these phenolic products were annotated from the Populus genome, their expression assessed by semiquantitative or quantitative reverse transcription polymerase chain reaction (PCR), and metabolic evidence for function presented. Unlike Arabidopsis, Populus leaves accumulate an array of hydroxycinnamoyl-quinate esters, which is consistent with broadened function of the expanded hydroxycinnamoyl-CoA transferase gene family. Greater flavonoid pathway diversity is also represented, and flavonoid gene families are larger. Consistent with expanded pathway function, most of these genes were upregulated during wound-stimulated condensed tannin synthesis in leaves. The suite of Populus genes regulating phenylpropanoid product accumulation should have important application in managing phenolic carbon pools in relation to climate change and global carbon cycling.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
Kumar, S. (2004) · Briefings in Bioinformatics · doi:10.1093/bib/5.2.150 · Cited by 11,756
Multiple sequence alignment with the Clustal series of programs
Chenna, R. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg500 · Cited by 4,875
Boerjan, W., Ralph, J., & Baucher, M. (2003) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.54.031902.134938 · Cited by 4,504
Flavonoid Biosynthesis. A Colorful Model for Genetics, Biochemistry, Cell Biology, and Biotechnology
Winkel-Shirley, B. (2001) · Plant Physiology · doi:10.1104/pp.126.2.485 · Cited by 3,635
A simple and efficient method for isolating RNA from pine trees
Chang, S., Puryear, J., & Cairney, J. (1993) · Plant Molecular Biology Reporter · doi:10.1007/bf02670468 · Cited by 3,580
Isochorismate synthase is required to synthesize salicylic acid for plant defence
Wildermuth, M. C., Dewdney, J., Wu, G., & Ausubel, F. M. (2001) · Nature · doi:10.1038/35107108 · Cited by 2,357
Genetics and Biochemistry of Anthocyanin Biosynthesis.
Holton, T. A., & Cornish, E. C. (1995) · The Plant Cell · doi:10.1105/tpc.7.7.1071 · Cited by 1,454
Biology of Populus and its implications for management and conservation
Stettler, R. F., Bradshaw, H. D., Heilman, P. E., & Hinckley, T. M. (1996) · Cited by 851
Genome-Wide Characterization of the Lignification Toolbox in Arabidopsis
Raes, J., Rohde, A., Christensen, J. H., Van de Peer, Y., & Boerjan, W. (2003) · Plant Physiology · doi:10.1104/pp.103.026484 · Cited by 821
Engineering plants with increased levels of the antioxidant chlorogenic acid
Niggeweg, R., Michael, A. J., & Martin, C. (2004) · Nature Biotechnology · doi:10.1038/nbt966 · Cited by 814
Cited by
Populus : A Model System for Plant Biology
Jansson, S., & Douglas, C. J. (2007) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.58.032806.103956 · Cited by 645
Characterization and Biological Function of the ISOCHORISMATE SYNTHASE2 Gene of Arabidopsis
Garcion, C., Lohmann, A., Lamodière, E., Catinot, J., Buchala, A., Doermann, P., & Métraux, J.-P. (2008) · Plant Physiology · doi:10.1104/pp.108.119420 · Cited by 420
Shi, R., Sun, Y.-H., Li, Q., Heber, S., Sederoff, R., & Chiang, V. L. (2010) · Plant and Cell Physiology · doi:10.1093/pcp/pcp175 · Cited by 323
Functional Analysis of a Predicted Flavonol Synthase Gene Family in Arabidopsis
Owens, D. K., Alerding, A. B., Crosby, K. C., Bandara, A. B., Westwood, J. H., & Winkel, B. S. J. (2008) · Plant Physiology · doi:10.1104/pp.108.117457 · Cited by 320
Castiglione, S., Todeschini, V., Franchin, C., Torrigiani, P., Gastaldi, D., Cicatelli, A., Rinaudo, C., Berta, G., Biondi, S., & Lingua, G. (2009) · Environmental Pollution · doi:10.1016/j.envpol.2009.02.011 · Cited by 105
Metadata
- Authors
- Tsai, C., Harding, S. A., Tschaplinski, T. J., Lindroth, R. L., & Yuan, Y.
- Venue
- New Phytologist
- Publisher
- Wiley
- Published
- 2006-08
- Volume
- 172
- Issue
- 1
- Pages
- 47-62
- ISSN
- 0028-646X (ISSN-L)
- 1469-8137
- OpenAlex
- W2144868934
- Cited by
- 309
- References
- 63
- FWCI
- 5.77
- Type
- journal article
- Language
- en
- Open access
- hybrid
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Genome‐wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus. https://app.cochat.ai/papers/10.1111/j.1469-8137.2006.01798.x
- The paper
- Tsai, C., Harding, S. A., Tschaplinski, T. J., Lindroth, R. L., & Yuan, Y. (2006). Genome‐wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus. New Phytologist. https://doi.org/10.1111/j.1469-8137.2006.01798.x
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
