Cited by 281Gut microbiota and healthClostridium difficile and Clostridium perfringens researchMicrobial Community Ecology and Physiology

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Cultivable bacterial diversity from the human colon

Duncan, S.H., Louis, P., Flint, H.J.·2007·Letters in Applied Microbiology

DOI 10.1111/j.1472-765x.2007.02129.x

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Abstract

Knowledge of the composition of the colonic microbiota is important for our understanding of how the balance of these microbes is influenced by diet and the environment, and which bacterial groups are important in maintaining gut health or promoting disease. Molecular methodologies have advanced our understanding of the composition and diversity of the colonic microbiota. Importantly, however, it is the continued isolation of bacterial representatives of key groups that offers the best opportunity to conduct detailed metabolic and functional studies. This also permits bacterial genome sequencing which will accelerate the linkage to functionality. Obtaining new human colonic bacterial isolates can be challenging, because most of these are strict anaerobes and many have rather exact nutritional and physical requirements. Despite this many new species are being isolated and described that occupy distinct niches in the colonic microbial community. This review focuses on these under-studied yet important gut anaerobes.

Integrity signals

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Crossref · 10.1111/j.1472-765x.2007.02129.x

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Additional file 2 of Profiles and integration of the gut microbiome and fecal metabolites in severe intrahepatic cholestasis of pregnancy
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Additional file 11 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 3 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 9 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 12 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 5 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
Mukhopadhya, I., Martin, J. C., Shaw, S., McKinley, A. J., Gratz, S. W., & Scott, K. P. (2022) · Figshare · doi:10.6084/m9.figshare.21341189
Additional file 6 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
Mukhopadhya, I., Martin, J. C., Shaw, S., McKinley, A. J., Gratz, S. W., & Scott, K. P. (2022) · Figshare · doi:10.6084/m9.figshare.21341192
Additional file 8 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
Mukhopadhya, I., Martin, J. C., Shaw, S., McKinley, A. J., Gratz, S. W., & Scott, K. P. (2022) · Figshare · doi:10.6084/m9.figshare.21341198
Additional file 7 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 4 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 10 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 1 of Spatial heterogeneity of bacterial colonization across different gut segments following inter-species microbiota transplantation
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Additional file 13 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Additional file 2 of Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
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Authors: Duncan, S. H., Louis, P., & Flint, H. J.
Affiliations: University of Aberdeen (GB)
Corresponding author: Duncan, S.H.
ORCID: Duncan, S.H.
Louis, P.
Flint, H.J.
Venue: Letters in Applied Microbiology
Publisher: Oxford University Press (OUP)
Published: 2007-04
Volume: 44
Issue: 4
Pages: 343-350
ISSN: 0266-8254 (ISSN-L)
1472-765X
DOI: 10.1111/j.1472-765x.2007.02129.x
OpenAlex: W2044219890
Cited by: 279
References: 51
Citations by year: 2026: 10 · 2025: 7 · 2024: 14 · 2023: 19 · 2022: 25 · 2021: 21 · 2020: 19 · 2019: 18 · 2018: 20 · 2017: 16 · 2016: 13 · 2015: 15 · 2014: 12 · 2013: 15 · 2012: 12
FWCI: 0.79
Type: journal article
Language: en
Open access: closed
Licence: doi.wiley.com/10.1002/tdm_license_1.1 (tdm, 3075 d)
Locations: Letters in Applied Microbiology (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Health Sciences › Medicine › Infectious Diseases › Clostridium difficile and Clostridium perfringens research
Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Keywords: colonic microbiota, human gut bacteria, anaerobic bacteria, bacterial isolation, bacterial diversity, gut health, diet and gut microbiota, bacterial genome sequencing, gut microbiota
MeSH terms: Anaerobiosis, Archaea, Bacteria, Colon, Feces, Humans, Biodiversity

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Cultivable bacterial diversity from the human colon

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