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Probiotics, their health benefits and applications for developing healthier foods: a review

Nagpal, R., Kumar, A., Kumar, M., Behare, P. V., Jain, S., & Yadav, H. (2012) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2012.02593.x · Cited by 496 · see citing works

Prebiotic stimulation of human colonic butyrate-producing bacteria and bifidobacteria,in vitro

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Microbial Metabolic Networks at the Mucus Layer Lead to Diet-Independent Butyrate and Vitamin B 12 Production by Intestinal Symbionts

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Gut Microbiome

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Modulation of the human gut microbiota by dietary fibres occurs at the species level

Chung, W. S. F., Walker, A. W., Louis, P., Parkhill, J., Vermeiren, J., Bosscher, D., Duncan, S. H., & Flint, H. J. (2016) · BMC Biology · doi:10.1186/s12915-015-0224-3 · Cited by 409 · see citing works

Fermentation in the Human Large Intestine: Its Physiologic Consequences and the Potential Contribution of Prebiotics

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Low dietary fiber intake increases Collinsella abundance in the gut microbiota of overweight and obese pregnant women

Gómez-Arango, L. F., Barrett, H. L., Wilkinson, S. A., Callaway, L. K., McIntyre, D. H., Morrison, M., & Nitert, M. D. (2017) · Gut Microbes · doi:10.1080/19490976.2017.1406584 · Cited by 404 · see citing works

Short-Chain Fatty Acids and Human Health: From Metabolic Pathways to Current Therapeutic Implications

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Fast food fever: reviewing the impacts of the Western diet on immunity

Myles, I. A. (2014) · Nutrition Journal · doi:10.1186/1475-2891-13-61 · Cited by 390 · see citing works

Gut Microbiota Contribute to Age-Related Changes in Skeletal Muscle Size, Composition, and Function: Biological Basis for a Gut-Muscle Axis

Grosicki, G. J., Fielding, R. A., & Lustgarten, M. S. (2018) · Calcified Tissue International · doi:10.1007/s00223-017-0345-5 · Cited by 388 · see citing works

Gut microbiome-related effects of berberine and probiotics on type 2 diabetes (the PREMOTE study)

Zhang, Y., Gu, Y., Ren, H., Wang, S., Zhong, H., Zhao, X., Ma, J., Gu, X., Xue, Y., Huang, S., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-18414-8 · Cited by 380 · see citing works

Environmental Factors, Gut Microbiota, and Colorectal Cancer Prevention

Song, M., & Chan, A. T. (2019) · Clinical Gastroenterology and Hepatology · doi:10.1016/j.cgh.2018.07.012 · Cited by 355 · see citing works

Enhanced butyrate formation by cross-feeding between <i>Faecalibacterium prausnitzii</i> and <i>Bifidobacterium adolescentis</i>

Rios-Covian, D., Gueimonde, M., Duncan, S. H., Flint, H. J., & de los Reyes-Gavilan, C. G. (2015) · FEMS Microbiology Letters · doi:10.1093/femsle/fnv176 · Cited by 371 · see citing works

Colon microbiota fermentation of dietary prebiotics towards short-chain fatty acids and their roles as anti-inflammatory and antitumour agents: A review

Fernández, J., Redondo-Blanco, S., Gutiérrez‐del‐Río, I., Miguélez, E. M., Villar, C. J., & Lombó, F. (2016) · Journal of Functional Foods · doi:10.1016/j.jff.2016.06.032 · Cited by 373 · see citing works

Functional dysbiosis within the gut microbiota of patients with constipated‐irritable bowel syndrome

Chassard, C., Dapoigny, M. C., Scott, K. P., Crouzet, L., Del’Homme, C., Marquet, P., Martin, J. C., Pickering, G. P., Ardid, D., Eschalier, A., et al. (2012) · Alimentary Pharmacology & Therapeutics · doi:10.1111/j.1365-2036.2012.05007.x · Cited by 366 · see citing works

Cross-Feeding between Bifidobacterium longum BB536 and Acetate-Converting, Butyrate-Producing Colon Bacteria during Growth on Oligofructose

Falony, G., Vlachou, A., Verbrugghe, K., & Vuyst, L. D. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.01296-06 · Cited by 362 · see citing works

Resistant starch: impact on the gut microbiome and health

DeMartino, P., & Cockburn, D. W. (2019) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2019.10.008 · Cited by 361 · see citing works

Probiotics, prebiotics, synbiotics and insulin sensitivity

Kim, Y. A., Keogh, J. B., & Clifton, P. M. (2017) · Nutrition Research Reviews · doi:10.1017/s095442241700018x · Cited by 341 · see citing works

Cross-feeding between bifidobacteria and butyrate-producing colon bacteria explains bifdobacterial competitiveness, butyrate production, and gas production

Vuyst, L. D., & Leroy, F. (2011) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2011.03.003 · Cited by 333 · see citing works

Environments that Induce Synthetic Microbial Ecosystems

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Culture-Independent Analyses of Temporal Variation of the Dominant Fecal Microbiota and Targeted Bacterial Subgroups in Crohn's Disease

Scanlan, P. D., Shanahan, F., O'Mahony, C., & Marchesi, J. R. (2006) · Journal of Clinical Microbiology · doi:10.1128/jcm.00312-06 · Cited by 330 · see citing works

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

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Quercetin and related polyphenols: new insights and implications for their bioactivity and bioavailability

Kawabata, K., Mukai, R., & Ishisaka, A. (2015) · Food & Function · doi:10.1039/c4fo01178c · Cited by 327 · see citing works

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities

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Bridging intestinal immunity and gut microbiota by metabolites

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Nutrition and the gut microbiome in the elderly

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A review of metabolic potential of human gut microbiome in human nutrition

Yadav, M., Verma, M. K., & Chauhan, N. S. (2017) · Archives of Microbiology · doi:10.1007/s00203-017-1459-x · Cited by 288 · see citing works

Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components

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The impact of nutrition on the human microbiome

Flint, H. J. (2012) · Nutrition Reviews · doi:10.1111/j.1753-4887.2012.00499.x · Cited by 291 · see citing works

Relevance of microbial coculture fermentations in biotechnology

Bader, J., Mast-Gerlach, E., Popović, M. K., Bajpai, R., & Ståhl, U. (2009) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2009.04659.x · Cited by 285 · see citing works

Human gut microbiota community structures in urban and rural populations in Russia

Tyakht, A., Kostryukova, E., Popenko, A., Belenikin, M. S., Pavlenko, A. V., Larin, A. K., Karpova, I. Y., Selezneva, O. V., Semashko, T. A., Ospanova, E. A., et al. (2013) · Nature Communications · doi:10.1038/ncomms3469 · Cited by 283 · see citing works

Manipulating the gut microbiota to maintain health and treat disease

Scott, K. P., Antoine, J., Midtvedt, T., & van Hemert, S. (2015) · Microbial Ecology in Health and Disease · doi:10.3402/mehd.v26.25877 · Cited by 284 · see citing works

Cultivable bacterial diversity from the human colon

Duncan, S. H., Louis, P., & Flint, H. J. (2007) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2007.02129.x · Cited by 279 · see citing works

Production of butyrate from lysine and the Amadori product fructoselysine by a human gut commensal

Bui, T. P. N., Ritari, J., Boeren, S. A., de Waard, P., Plugge, C. M., & de Vos, W. M. (2015) · Nature Communications · doi:10.1038/ncomms10062 · Cited by 272 · see citing works

Habitual dietary fibre intake influences gut microbiota response to an inulin-type fructan prebiotic: a randomised, double-blind, placebo-controlled, cross-over, human intervention study

Healey, G., Murphy, R., Butts, C., Brough, L., Whelan, K., & Coad, J. (2018) · British Journal Of Nutrition · doi:10.1017/s0007114517003440 · Cited by 267 · see citing works

The host selects mucosal and luminal associations of coevolved gut microorganisms: a novel concept

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Glycan Utilization and Cross-Feeding Activities by Bifidobacteria

Turroni, F., Milani, C., Duranti, S., Mahony, J., van Sinderen, D., & Ventura, M. (2018) · Trends in Microbiology · doi:10.1016/j.tim.2017.10.001 · Cited by 263 · see citing works

Is butyrate the link between diet, intestinal microbiota and obesity-related metabolic diseases?

Brahe, L. K., Astrup, A., & Larsen, L. H. (2013) · Obesity Reviews · doi:10.1111/obr.12068 · Cited by 264 · see citing works

The gut microbiota: A treasure for human health

Li, D., Wang, P., Wang, P., Hu, X., & Chen, F. (2016) · Biotechnology Advances · doi:10.1016/j.biotechadv.2016.08.003 · Cited by 265 · see citing works

Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production

Reichardt, N., Vollmer, M., Holtrop, G., Farquharson, F. M., Wefers, D., Bunzel, M., Duncan, S. H., Drew, J. E., Williams, L. M., Milligan, G., et al. (2018) · The ISME Journal · doi:10.1038/ismej.2017.196 · Cited by 249 · see citing works

Plant Cell Wall Breakdown by Anaerobic Microorganisms from the Mammalian Digestive Tract

Flint, H. J., & Bayer, E. A. (2008) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1419.022 · Cited by 251 · see citing works

Effects of Xylo-Oligosaccharides on Broiler Chicken Performance and Microbiota

Maesschalck, C. D., Eeckhaut, V., Maertens, L., Lange, L. D., Marchal, L. M., Nezer, C., Baere, S. D., Croubels, S., Daube, G., Dewulf, J., et al. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.01616-15 · Cited by 254 · see citing works

Impact of pH on Lactate Formation and Utilization by Human Fecal Microbial Communities

Belenguer, Á., Duncan, S. H., Holtrop, G., Anderson, S. E., Lobley, G. E., & Flint, H. J. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00508-07 · Cited by 240 · see citing works

Dietary fibre and the gut microbiota

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Microbiota and reproducibility of rodent models

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Healthy Human Gastrointestinal Microbiome: Composition and Function After a Decade of Exploration

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Fecal Microbiota Composition of Breast‐Fed Infants Is Correlated With Human Milk Oligosaccharides Consumed

Wang, M., Li, M., Wu, S., Lebrilla, C. B., Chapkin, R. S., Ivanov, I. V., & Donovan, S. M. (2015) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0000000000000752 · Cited by 232 · see citing works

Modulation of the Gastrointestinal Microbiome with Nondigestible Fermentable Carbohydrates To Improve Human Health

Deehan, E. C., Duar, R. M., Armet, A. M., Pérez-Muñoz, M. E., Jin, M., & Walter, J. (2017) · Microbiology Spectrum · doi:10.1128/microbiolspec.bad-0019-2017 · Cited by 227 · see citing works

Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes

Veiga, P., Gallini, C. A., Beal, C., Michaud, M., Delaney, M. L., DuBois, A. M., Khlebnikov, A., Vlieg, J. E. T. V. H., Punit, S., Glickman, J. N., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1011737107 · Cited by 220 · see citing works

Conversion of dietary inositol into propionate and acetate by commensal Anaerostipes associates with host health

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Phylogeny, culturing, and metagenomics of the human gut microbiota

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Bifidobacterium exopolysaccharides fermented by human microbiota

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Cell factories converting lactate and acetate to butyrate: Clostridium butyricum and microbial communities from dark fermentation bioreactors

Detman, A., Mielecki, D., Chojnacka, A., Salamon, A., Błaszczyk, M., & Sikora, A. (2019) · Microbial Cell Factories · doi:10.1186/s12934-019-1085-1 · Cited by 213 · see citing works

Health‐beneficial effects of probiotics: Its mode of action

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The HMI™ module: a new tool to study the Host-Microbiota Interaction in the human gastrointestinal tract in vitro

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The intestinal microbiota in aged mice is modulated by dietary resistant starch and correlated with improvements in host responses

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Models for intestinal fermentation: association between food components, delivery systems, bioavailability and functional interactions in the gut

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Gut microbial adaptation to dietary consumption of fructose, artificial sweeteners and sugar alcohols: implications for host–microbe interactions contributing to obesity

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Enhanced butyrate formation by cross-feeding between <i>Faecalibacterium prausnitzii</i> and <i>Bifidobacterium adolescentis</i>

Rios-Covian, D., Gueimonde, M., Duncan, S. H., Flint, H. J., & de los Reyes-Gavilan, C. G. (2015) · FEMS Microbiology Letters · doi:10.1093/femsle/fnv176 · Cited by 371 · see citing works

Lactate cross-feeding between Bifidobacterium species and Megasphaera indica contributes to butyrate formation in the human colonic environment

Zhao, S., Lau, R. W. M., Yang, Z. H., & Chen, M. (2023) · Applied and Environmental Microbiology · doi:10.1128/aem.01019-23 · Cited by 87 · see citing works

Lactate-Utilizing Bacteria, Isolated from Human Feces, That Produce Butyrate as a Major Fermentation Product

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Lactate- and acetate-based cross-feeding interactions between selected strains of lactobacilli, bifidobacteria and colon bacteria in the presence of inulin-type fructans

Moens, F., Verce, M., & Vuyst, L. D. (2016) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2016.10.019 · Cited by 191 · see citing works

Mucin Cross-Feeding of Infant Bifidobacteria and Eubacterium hallii

Bunešová, V., Lacroix, C., & Schwab, C. (2017) · Microbial Ecology · doi:10.1007/s00248-017-1037-4 · Cited by 149 · see citing works