Gene expression profile of long‐lived Ames dwarf mice and Little mice
Abstract
Summary: Ames dwarf mice (Prop1df/df) and Little mice (Ghrhrlit/lit) are used as models of delayed aging and show significant increases in lifespan (50% and 25%, respectively) when compared with their wild‐type siblings. To gain further insight into the molecular basis for the extended longevity of these mice, we used oligonucleotide microarrays to measure levels of expression of over 14 000 RNA transcripts in liver during normal aging at 3, 6, 12 and 24 months. We found that the Prop1df/df and Ghrhrlit/lit genotypes produce dramatic alterations in gene expression, which are predominantly maintained at all ages. We found 1125 genes to be significantly affected by the Prop1df/df genotype and 1152 genes were significantly affected by the Ghrhrlit/lit genotype; 547 genes were present in both gene lists and showed parallel changes in gene expression, suggesting common mechanisms for the extended longevity in these mutants. Some of the functional gene classes most affected in these mutants included: amino acid metabolism, TCA cycle, mitochondrial electron transport, fatty acid, cholesterol and steroid metabolism, xenobiotic metabolism and oxidant metabolism. We found that the Prop1df/df genotype, and to a minor extent the Ghrhrlit/lit genotype, also produced complex alterations in age‐dependent changes in gene expression as compared with wild‐type mice. In some cases these alterations reflected a partial delay or deceleration of age‐related changes in gene expression as seen in wild‐type mice but they also introduced age‐related changes that are unique for each of these mutants and not present in wild‐type mice.
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The shared core of differentially expressed genes with age is characterized by increased expression of genes involved in inflammation.
“and increased expression of genes involved in inflammation, consistent with previous observations in S. cerevisiae (Hendrickson et al. 2018) and multiple studies of aging tissues (Amador-Noguez et al. 2004; Rodwell et al. 2004; O'Brown et al. 2015; Benayoun et al. 2019).”
From Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging (2019) · cites this paper as Amador-Noguez et al. 2004
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Extending the Lifespan of Long-Lived Mice
Bartke, A., Wright, J. C., Mattison, J. A., Ingram, D. K., Miller, R. A., & Roth, G. S. (2001) · Nature · doi:10.1038/35106646 · Cited by 422 · see citing works
Chandrashekar, V., & Bartke, A. (1993) · Biology of Reproduction · doi:10.1095/biolreprod48.3.544 · Cited by 108 · see citing works
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Selman, C., Lingard, S., Choudhury, A. I., Batterham, R. L., Claret, M., Clements, M., Ramadani, F., Okkenhaug, K., Schuster, E., Blanc, E., et al. (2008) · The FASEB Journal · doi:10.1096/fj.07-9261com · Cited by 532 · see citing works
Molecular physiology of bile acid signaling in health, disease, and aging
Perino, A., Demagny, H., Velazquez-Villegas, L., & Schoonjans, K. (2021) · Physiological Reviews · doi:10.1152/physrev.00049.2019 · Cited by 481 · see citing works
Intestinal Microbiota Regulate Xenobiotic Metabolism in the Liver
Björkholm, B., Bok, C. M., Lundin, A., Rafter, J., Hibberd, M. L., & Pettersson, S. (2009) · PLoS ONE · doi:10.1371/journal.pone.0006958 · Cited by 249 · see citing works
Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging
Kimmel, J. C., Penland, L., Rubinstein, N. D., Hendrickson, D. G., Kelley, D. R., & Rosenthal, A. Z. (2019) · Genome Research · doi:10.1101/gr.253880.119 · Cited by 184 · see citing works
“…protein targeting to the ER and increased expression of genes involved in inflammation, consistent with previous observations in S. cerevisiae (Hendrickson et al. 2018) and multiple studies of aging tissues (Amador-Noguez et al. 2004; Rodwell et al. 2004; O’Brown et al. 2015; Benayoun et al. 2019).”
ResultIdentification and Application of Gene Expression Signatures Associated with Lifespan Extension
Tyshkovskiy, A., Bozaykut, P., Borodinova, A. A., Gerashchenko, M. V., Ables, G. P., Garratt, M., Khaitovich, P., Clish, C. B., Miller, R. A., & Gladyshev, V. N. (2019) · Cell Metabolism · doi:10.1016/j.cmet.2019.06.018 · Cited by 167 · see citing works
Corton, J. C., & Brown-Borg, H. M. (2005) · The Journals of Gerontology Series A: Biological Sciences and Medical Sciences · doi:10.1093/gerona/60.12.1494 · Cited by 106 · see citing works
Host and microbiota metabolic signals in aging and longevity
Zhou, Y., Hu, G., & Wang, M. C. (2021) · Nature Chemical Biology · doi:10.1038/s41589-021-00837-z · Cited by 70 · see citing works
The Shc locus regulates insulin signaling and adiposity in mammals
Tomilov, A. A., Ramsey, J. J., Hagopian, K., Giorgio, M., Kim, K. M., Lam, A., Migliaccio, E., Lloyd, K. C., Berniakovich, I., Prolla, T. A., et al. (2011) · Aging Cell · doi:10.1111/j.1474-9726.2010.00641.x · Cited by 64 · see citing works
“Also, some long-lived rodents, such as Ames, Snell and little mice, and GHRKO mice (Hsieh et al., 2002b; Amador-Noguez et al., 2004; Bartke & Brown-Borg, 2004), have more fat than controls at the end of life.”
BackgroundMolecular pathology endpoints useful for aging studies
Niedernhofer, L. J., Kirkland, J. L., & Ladiges, W. (2017) · Ageing Research Reviews · doi:10.1016/j.arr.2016.09.012 · Cited by 59 · see citing works
- Authors
- Amador‐Noguez, D., Yagi, K., Venable, S., & Darlington, G.
- Affiliations
- Baylor College of Medicine (US)
- Chiba University (JP)
- Corresponding author
- Amador‐Noguez, Daniel
- Venue
- Aging Cell
- Publisher
- Wiley
- Published
- 2004-10-25
- Volume
- 3
- Issue
- 6
- Pages
- 423-441
- ISSN
- 1474-9718 (ISSN-L)
- 1474-9726
- OpenAlex
- W1495650262
- Cited by
- 132
- References
- 2
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 7 · 2023: 3 · 2022: 4 · 2021: 7 · 2020: 3 · 2019: 7 · 2018: 2 · 2017: 3 · 2016: 5 · 2015: 5 · 2014: 2 · 2013: 11 · 2012: 5
- FWCI
- 2.24
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Aging Cell (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Ellison Medical Foundation
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Health Sciences › Medicine › Endocrinology, Diabetes and Metabolism › Growth Hormone and Insulin-like Growth Factors
- Health Sciences › Medicine › Physiology › Telomeres, Telomerase, and Senescence
- Keywords
- Ames dwarf mice, PROP1, delayed aging, longevity, gene expression profiling, liver transcriptome, amino acid metabolism, TCA cycle, mitochondrial electron transport chain, fatty acid metabolism, xenobiotic metabolism
- MeSH terms
- Aging, Animals, Female, Genotype, Longevity, Male, Mice, Mutant Strains, Mutation, Gene Expression Regulation, Developmental, Gene Expression Profiling, Models, Animal, Mice
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