The DOI matches its Crossref record; 45 of the 45 references it cites were found in a registry or an index.
Regulation of the Arabidopsis CBF regulon by a complex low‐temperature regulatory network
Abstract
Summary: Exposure of Arabidopsis thaliana plants to low non‐freezing temperatures results in an increase in freezing tolerance that involves action of the C‐repeat binding factor (CBF) regulatory pathway. CBF1, CBF2 and CBF3, which are rapidly induced in response to low temperature, encode closely related AP2/ERF DNA‐binding proteins that recognize the C‐repeat (CRT)/dehydration‐responsive element (DRE) DNA regulatory element present in the promoters of CBF‐regulated genes. The CBF transcription factors alter the expression of more than 100 genes, known as the CBF regulon, which contribute to an increase in freezing tolerance. In this study, we investigated the extent to which cold induction of the CBF regulon is regulated by transcription factors other than CBF1, CBF2 and CBF3, and whether freezing tolerance is dependent on a functional CBF–CRT/DRE regulatory module. To address these issues we generated transgenic lines that constitutively overexpressed a truncated version of CBF2 that had dominant negative effects on the function of the CBF–CRT/DRE regulatory module, and 11 transcription factors encoded by genes that were rapidly cold‐induced in parallel with the ‘first‐wave’ CBF genes, and determined the effects that overexpressing these proteins had on global gene expression and freezing tolerance. Our results indicate that cold regulation of the CBF regulon involves extensive co‐regulation by other first‐wave transcription factors; that the low‐temperature regulatory network beyond the CBF pathway is complex and highly interconnected; and that the increase in freezing tolerance that occurs with cold acclimation is only partially dependent on the CBF–CRT/DRE regulatory module.
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Cites
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
Benjamini, Y., & Hochberg, Y. (1995) · Journal of the Royal Statistical Society Series B: Statistical Methodology · doi:10.1111/j.2517-6161.1995.tb02031.x · Cited by 109,482
Cluster analysis and display of genome-wide expression patterns
Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14863 · Cited by 16,184
Bioconductor: open software development for computational biology and bioinformatics
Gentleman, R. C., Carey, V. J., Bates, D. M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., et al. (2004) · Genome Biology · doi:10.1186/gb-2004-5-10-r80 · Cited by 12,172
Smyth, G. K. (2004) · Statistical Applications in Genetics and Molecular Biology · doi:10.2202/1544-6115.1027 · Cited by 11,829
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
Irizarry, R. A. (2003) · Biostatistics · doi:10.1093/biostatistics/4.2.249 · Cited by 10,603
affy—analysis of Affymetrix GeneChip data at the probe level
Gautier, L., Cope, L., Bolstad, B. M., & Irizarry, R. A. (2004) · Bioinformatics · doi:10.1093/bioinformatics/btg405 · Cited by 5,218
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
Gaj, T., Gersbach, C. A., & Barbas, C. F. (2013) · Trends in Biotechnology · doi:10.1016/j.tibtech.2013.04.004 · Cited by 3,820
PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms
Thomashow, M. F. (1999) · Annual Review of Plant Physiology and Plant Molecular Biology · doi:10.1146/annurev.arplant.50.1.571 · Cited by 3,551
Self-citationLiu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., & Shinozaki, K. (1998) · The Plant Cell · doi:10.1105/tpc.10.8.1391 · Cited by 3,044
Sakuma, Y., Liu, Q., Dubouzet, J. G., Abe, H., Shinozaki, K., & Yamaguchi-Shinozaki, K. (2002) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2001.6299 · Cited by 1,993
Cited by
Zhao, C., Zhang, Z., Xie, S., Si, T., Li, Y., & Zhu, J.-K. (2016) · Plant Physiology · doi:10.1104/pp.16.00533 · Cited by 615
Abiotic Stress in Crop Production
Kopecká, R., Kameniarová, M., Černý, M., Brzobohatý, B., & Novák, J. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24076603 · Cited by 369
An Overview of Biomembrane Functions in Plant Responses to High-Temperature Stress
Niu, Y., & Xiang, Y. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00915 · Cited by 355
Zhang, B., Tieman, D. M., Jiao, C., Xu, Y., Chen, K., Fei, Z., Giovannoni, J. J., & Klee, H. J. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1613910113 · Cited by 331
Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome
Calixto, C. P. G., Guo, W., James, A. B., Tzioutziou, N. A., Entizne, J. C., Panter, P. E., Knight, H., Nimmo, H. G., Zhang, R., & Brown, J. W. S. (2018) · The Plant Cell · doi:10.1105/tpc.18.00177 · Cited by 298
Metadata
- Authors
- Park, S., Lee, C., Doherty, C. J., Gilmour, S. J., Kim, Y., & Thomashow, M. F.
- Venue
- The Plant Journal
- Publisher
- Wiley
- Published
- 2015-03-23
- Volume
- 82
- Issue
- 2
- Pages
- 193-207
- ISSN
- 0960-7412 (ISSN-L)
- 1365-313X
- OpenAlex
- W2135212876
- Cited by
- 512
- References
- 45
- FWCI
- 39.27
- Type
- journal article
- Language
- en
- Open access
- closed
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