CDK13 cooperates with CDK12 to control global RNA polymerase II processivity
Open accessAbstract
CDK12 and CDK13 regulate POLII elongation rate and processivity and influence the selection of transcription termination sites.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Dual inhibition of CDK12 and CDK13 significantly decreases RNA Pol II CTD Ser2 and Thr4 phosphorylation, as well as RNA Pol II processivity and speed.
“Dual inhibition of both kinases significantly decreases RNA Pol II CTD Ser2 and Thr4 phosphorylation, as well as RNA Pol II processivity and speed (Fan et al, 2020).”
From RNA polymerase II speed: a key player in controlling and adapting transcriptome composition (2021) · cites this paper as Fan et al, 2020
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
Zhou, Y., Zhou, B., Pache, L., Chang, M., Khodabakhshi, A. H., Tanaseichuk, O., Benner, C., & Chanda, S. K. (2019) · Nature Communications · doi:10.1038/s41467-019-09234-6 · Cited by 14,611 · see citing works
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
Law, C. W., Chen, Y., Shi, W., & Smyth, G. K. (2014) · Genome Biology · doi:10.1186/gb-2014-15-2-r29 · Cited by 6,155 · see citing works
Malumbres, M. (2014) · Genome biology · doi:10.1186/gb4184 · Cited by 1,683 · see citing works
Hulsen, T., de Vlieg, J., & Alkema, W. B. L. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-488 · Cited by 1,675 · see citing works
Analysis and design of RNA sequencing experiments for identifying isoform regulation
Katz, Y., Wang, E. T., Airoldi, E. M., & Burge, C. B. (2010) · Nature Methods · doi:10.1038/nmeth.1528 · Cited by 1,353 · see citing works
Transcriptional Addiction in Cancer
Bradner, J. E., Hnisz, D., & Young, R. A. (2017) · Cell · doi:10.1016/j.cell.2016.12.013 · Cited by 1,188 · see citing works
Pol II phosphorylation regulates a switch between transcriptional and splicing condensates
Guo, Y. E., Manteiga, J. C., Henninger, J. E., Sabari, B. R., Dall’Agnese, A., Hannett, N. M., Spille, J.-H., Afeyan, L. K., Zamudio, A. V., Shrinivas, K., et al. (2019) · Nature · doi:10.1038/s41586-019-1464-0 · Cited by 676 · see citing works
Thiol-linked alkylation of RNA to assess expression dynamics
Herzog, V. A., Reichholf, B., Neumann, T., Rescheneder, P., Bhat, P., Burkard, T. R., Wlotzka, W., von Haeseler, A., Zuber, J., & Ameres, S. L. (2017) · Nature Methods · doi:10.1038/nmeth.4435 · Cited by 622 · see citing works
Thiol-linked alkylation for the metabolic sequencing of RNA
Herzog, V. A., Reichholf, B., Neumann, T., Rescheneder, P., Bhat, P., Burkard, T. R., Wlotzka, W., von Haeseler, A., Zuber, J., & Ameres, S. L. (2017) · doi:10.1101/177642 · Cited by 622 · see citing works
Inactivation of CDK12 Delineates a Distinct Immunogenic Class of Advanced Prostate Cancer
Wu, Y.-M., Cieslik, M. P., Lonigro, R. J., Vats, P., Reimers, M. A., Cao, X., Yu, N., Wang, L., Kunju, L. P., Sarkar, N. D., et al. (2018) · Cell · doi:10.1016/j.cell.2018.04.034 · Cited by 600 · see citing works
Blazek, D., Kohoutek, J., Bartholomeeusen, K., Johansen, E., Hulinkova, P., Luo, Z., Cimermancic, P., Ule, J., & Peterlin, B. M. (2011) · Genes & Development · doi:10.1101/gad.16962311 · Cited by 522 · see citing works
Quantitative ChIP-Seq normalization reveals global modulation of the epigenome
Orlando, D. A., Chen, M. W., Brown, V. E., Solanki, S., Choi, Y. J., Olson, E. R., Fritz, C. C., Bradner, J. E., & Guenther, M. G. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.018 · Cited by 503 · see citing works
The RNA Polymerase II Carboxy-Terminal Domain (CTD) Code
Eick, D., & Geyer, M. (2013) · Chemical Reviews · doi:10.1021/cr400071f · Cited by 470 · see citing works
Self-citationBorn to run: control of transcription elongation by RNA polymerase II
Chen, F. X., Smith, E. R., & Shilatifard, A. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-018-0010-5 · Cited by 447 · see citing works
Covalent targeting of remote cysteine residues to develop CDK12 and CDK13 inhibitors
Zhang, T., Kwiatkowski, N., Olson, C. M., Dixon-Clarke, S. E., Abraham, B. J., Greifenberg, A. K., Ficarro, S. B., Elkins, J. M., Liang, Y., Hannett, N. M., et al. (2016) · Nature Chemical Biology · doi:10.1038/nchembio.2166 · Cited by 374 · see citing works
Self-citationBajrami, I., Frankum, J. R., Konde, A., Miller, R. E., Rehman, F. L., Brough, R., Campbell, J., Sims, D., Rafiq, R., Hooper, S., et al. (2014) · Cancer Research · doi:10.1158/0008-5472.can-13-2541 · Cited by 373 · see citing works
CDK12 regulates DNA repair genes by suppressing intronic polyadenylation
Dubbury, S. J., Boutz, P. L., & Sharp, P. A. (2018) · Nature · doi:10.1038/s41586-018-0758-y · Cited by 318 · see citing works
Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate
Fong, N., Kim, H., Zhou, Y., Ji, X., Qiu, J., Saldi, T., Diener, K., Jones, K., Fu, X.-D., & Bentley, D. L. (2014) · Genes & Development · doi:10.1101/gad.252106.114 · Cited by 287 · see citing works
Krajewska, M., Dries, R., Grassetti, A. V., Dust, S., Gao, Y., Huang, H., Sharma, B., Day, D. S., Kwiatkowski, N., Pomaville, M., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-09703-y · Cited by 281 · see citing works
Self-citationWidespread intronic polyadenylation inactivates tumour suppressor genes in leukaemia
Lee, S., Singh, I., Tisdale, S., Abdel-Wahab, O. I., Leslie, C. S., & Mayr, C. (2018) · Nature · doi:10.1038/s41586-018-0465-8 · Cited by 250 · see citing works
Joshi, P. M., Sutor, S. L., Huntoon, C. J., & Karnitz, L. M. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.551143 · Cited by 201 · see citing works
Williamson, L. M., Saponaro, M., Boeing, S., East, P., Mitter, R., Kantidakis, T., Kelly, G. P., Lobley, A., Walker, J., Spencer‐Dene, B., et al. (2017) · Cell · doi:10.1016/j.cell.2017.01.019 · Cited by 197 · see citing works
Self-citationLiang, K., Gao, X., Gilmore, J. M., Florens, L. A., Washburn, M. P., Smith, E. R., & Shilatifard, A. (2015) · Molecular and Cellular Biology · doi:10.1128/mcb.01426-14 · Cited by 194 · see citing works
The structure and substrate specificity of human Cdk12/Cyclin K
Bösken, C. A., Farnung, L., Hintermair, C., Merzel Schachter, M., Vogel-Bachmayr, K., Blazek, D., Anand, K., Fisher, R. P., Eick, D., & Geyer, M. (2014) · Nature Communications · doi:10.1038/ncomms4505 · Cited by 191 · see citing works
Self-citationEWS/FLI confers tumor cell synthetic lethality to CDK12 inhibition in Ewing sarcoma
Iniguez, A. B., Stolte, B., Wang, E. J., Conway, A. S., Alexe, G., Dharia, N. V., Kwiatkowski, N., Zhang, T., Abraham, B. J., Mora, J., et al. (2018) · Cancer Cell · doi:10.1016/j.ccell.2017.12.009 · Cited by 173 · see citing works
Self-citationCDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion
Tien, J. F., Mazloomian, A., Cheng, S., Hughes, C. S., Chow, C. C. T., Canapi, L. T., Oloumi, A., Trigo‐Gonzalez, G., Bashashati, A., Xu, J., et al. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx187 · Cited by 165 · see citing works
Transcriptional Control by Premature Termination: A Forgotten Mechanism
Kamieniarz-Gdula, K., & Proudfoot, N. J. (2019) · Trends in Genetics · doi:10.1016/j.tig.2019.05.005 · Cited by 158 · see citing works
Structural and functional analysis of the Cdk13/Cyclin K complex
Greifenberg, A. K., Hönig, D., Pilarova, K., Düster, R., Bartholomeeusen, K., Bösken, C. A., Anand, K., Blazek, D., & Geyer, M. (2016) · Cell Reports · doi:10.1016/j.celrep.2015.12.025 · Cited by 157 · see citing works
Self-citationCdk7: a kinase at the core of transcription and in the crosshairs of cancer drug discovery
Fisher, R. P. (2018) · Transcription · doi:10.1080/21541264.2018.1553483 · Cited by 145 · see citing works
Gregory, G. P., Hogg, S. J., Kats, L. M., Vidacs, E., Baker, A. J., Gilan, O., Lefebure, M., Martin, B. P., Dawson, M. A., Johnstone, R. W., et al. (2014) · Leukemia · doi:10.1038/leu.2015.10 · Cited by 143 · see citing works
Self-citationBaker, A., Gregory, G. P., Verbrugge, I., Kats, L. M., Hilton, J. J., Vidacs, E., Lee, E. M., Lock, R. B., Zuber, J. A., Shortt, J., et al. (2015) · Cancer Research · doi:10.1158/0008-5472.can-15-1070 · Cited by 117 · see citing works
Self-citationCDK12 controls G1/S progression by regulating RNAPII processivity at core DNA replication genes
Manavalan, A. P. C., Pilařová, K., Kluge, M., Bartholomeeusen, K., Rájecký, M., Oppelt, J., Khirsariya, P., Paruch, K., Krejčí, L., Friedel, C. C., et al. (2019) · EMBO Reports · doi:10.15252/embr.201847592 · Cited by 110 · see citing works
RNA Polymerase II transcription elongation and Pol II CTD Ser2 phosphorylation
Bowman, E. A., & Kelly, W. G. (2014) · Nucleus · doi:10.4161/nucl.29347 · Cited by 108 · see citing works
Human CDK12 and CDK13, multi-tasking CTD kinases for the new millenium
Greenleaf, A. L. (2018) · Transcription · doi:10.1080/21541264.2018.1535211 · Cited by 105 · see citing works
Therapeutic targeting of transcriptional cyclin-dependent kinases
Galbraith, M. D., Bender, H., & Espinosa, J. M. (2018) · Transcription · doi:10.1080/21541264.2018.1539615 · Cited by 105 · see citing works
Frequent Amplification of CENPF, GMNN and CDK13 Genes in Hepatocellular Carcinomas
Kim, H.-E., Kim, D. G., Lee, K. J., Son, J. G., Song, M., Park, Y.-M., Kim, J.-J., Cho, S. W., Chi, S.-G., Cheong, H. S., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0043223 · Cited by 101 · see citing works
Harrison, P. F., Powell, D., Clancy, J. L., Preiß, T., Boag, P. R., Traven, A., Seemann, T., & Beilharz, T. H. (2015) · RNA · doi:10.1261/rna.048355.114 · Cited by 91 · see citing works
Self-citationThe emerging roles of CDK12 in tumorigenesis
Paculová, H., & Kohoutek, J. (2017) · Cell Division · doi:10.1186/s13008-017-0033-x · Cited by 79 · see citing works
Transcriptional elongation checkpoint control in development and diseasePreprint
Smith, E. R., & Shilatifard, A. (2013) · Genes & Development · doi:10.1101/gad.215137.113 · Cited by 68 · see citing works
Cyclin-Dependent Kinase 12 Increases 3′ End Processing of Growth Factor-Induced c-FOS Transcripts
Eifler, T., Shao, W., Bartholomeeusen, K., Fujinaga, K., Jäger, S., Johnson, J. R., Luo, Z., Krogan, N. J., & Peterlin, B. M. (2014) · Molecular and Cellular Biology · doi:10.1128/mcb.01157-14 · Cited by 63 · see citing works
Cyclin-Dependent Kinase-9 Is a Therapeutic Target in MYC-Expressing Diffuse Large B-Cell Lymphoma
Hashiguchi, T., Bruss, N., Best, S., Lam, V., Danilova, O. V., Paiva, C. J., Wolf, J., Gilbert, E. W., Okada, C. Y., Kaur, P., et al. (2019) · Molecular Cancer Therapeutics · doi:10.1158/1535-7163.mct-18-1023 · Cited by 59 · see citing works
Bartkowiak, B., & Greenleaf, A. L. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.612226 · Cited by 54 · see citing works
Devany, E., Park, J. Y., Murphy, M. R., Zakusilo, G., Baquero, J., Zhang, X., Hoque, M., Tian, B., & Kleiman, F. E. (2016) · Cell Discovery · doi:10.1038/celldisc.2016.13 · Cited by 48 · see citing works
Engineering an analog-sensitive CDK12 cell line using CRISPR/Cas
Bartkowiak, B., Yan, C. M., & Greenleaf, A. L. (2015) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2015.07.010 · Cited by 46 · see citing works
Hamilton, M. J., Caswell, R. C., Canham, N., Cole, T., Firth, H. V., Foulds, N., Heimdal, K., Hobson, E., Houge, G., Joss, S., et al. (2018) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2017-104620 · Cited by 43 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Targeting the epigenetic regulation of antitumour immunity
Hogg, S. J., Beavis, P. A., Dawson, M. A., & Johnstone, R. W. (2020) · Nature Reviews Drug Discovery · doi:10.1038/s41573-020-0077-5 · Cited by 653 · see citing works
Self-citationContext-specific regulation and function of mRNA alternative polyadenylation
Mitschka, S., & Mayr, C. (2022) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-022-00507-5 · Cited by 336 · see citing works
Cyclin-dependent protein kinases and cell cycle regulation in biology and disease
Pellarin, I., Dall'Acqua, A., Favero, A., Segatto, I., Rossi, V., Crestan, N., Karimbayli, J., Belletti, B., & Baldassarre, G. (2025) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-02080-z · Cited by 323 · see citing works
Krajewska, M., Dries, R., Grassetti, A. V., Dust, S., Gao, Y., Huang, H., Sharma, B., Day, D. S., Kwiatkowski, N., Pomaville, M., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-09703-y · Cited by 281 · see citing works
Self-citationCauses and consequences of RNA polymerase II stalling during transcript elongation
González, M. N., Blears, D., & Svejstrup, J. Q. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-00308-8 · Cited by 238 · see citing works
Self-citationRNA polymerase II speed: a key player in controlling and adapting transcriptome composition
Muniz, L., Nicolas, E., & Trouche, D. (2021) · The EMBO Journal · doi:10.15252/embj.2020105740 · Cited by 203 · see citing works
“Indeed, in mammalian cells most studies only consider very long genes to accurately decipher an elongation speed (Saponaro et al , 2014; Cortazar et al , 2019; Gregersen et al , 2019; Hou et al , 2019; Sheridan et al , 2019; Fan et al , 2020).”
Targeting transcription cycles in cancer
Vervoort, S., Devlin, J., Kwiatkowski, N., Teng, M.-X., Gray, N., & Johnstone, R. (2021) · Nature Reviews. Cancer · doi:10.1038/s41568-021-00411-8 · Cited by 140 · see citing works
Self-citationDiscovery and resistance mechanism of a selective CDK12 degrader
Jiang, B., Gao, Y., Che, J., Lu, W., Kaltheuner, I. H., Dries, R., Kalocsay, M., Berberich, M. J., Jiang, J., You, I., et al. (2021) · Nature Chemical Biology · doi:10.1038/s41589-021-00765-y · Cited by 150 · see citing works
Self-citationTargeting CDK9 for Anti-Cancer Therapeutics
Mandal, R., Becker, S., & Strebhardt, K. (2021) · Cancers · doi:10.3390/cancers13092181 · Cited by 132 · see citing works
Dobrowolski, C. N., Paunovska, K., Echeverri, E. S., Loughrey, D., Sanchez, A. J. D. S., Ni, H., Hatit, M. Z. C., Lokugamage, M. P., Kuzminich, Y., Peck, H. E., et al. (2022) · Nature Nanotechnology · doi:10.1038/s41565-022-01146-9 · Cited by 103 · see citing works
CDK9 keeps RNA polymerase II on track
Egloff, S. (2021) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-021-03878-8 · Cited by 99 · see citing works
Discovery of a Highly Potent and Selective Dual PROTAC Degrader of CDK12 and CDK13
Yang, J., Chang, Y., Tien, J. C.-Y., Wang, Z., Zhou, Y., Zhang, P., Huang, W., Vo, J. N., Apel, I. J., Wang, C., et al. (2022) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c00384 · Cited by 96 · see citing works
Zhang, Y., Chen, X., Zhang, H., Wen, J.-K., Gao, H., Shi, B., Wang, D.-D., Han, Z., Gu, J., Zhao, C.-M., et al. (2023) · Cell Death and Differentiation · doi:10.1038/s41418-023-01223-z · Cited by 93 · see citing works
Niu, T., Li, K., Li, J., Zhou, Z., Hong, J.-E., Chen, X., Dong, X., He, Q., Cao, J., Yang, B., et al. (2021) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2021.114012 · Cited by 90 · see citing works
Rimel, J. K., Poss, Z. C., Erickson, B., Maas, Z. L., Ebmeier, C. C., Johnson, J. L., Decker, T.-M., Yaron, T. M., Bradley, M. J., Hamman, K. B., et al. (2020) · Genes & Development · doi:10.1101/gad.341545.120 · Cited by 87 · see citing works
Self-citationRelocalizing transcriptional kinases to activate apoptosis
Sarott, R. C., Gourisankar, S. P., Karim, B. A., Nettles, S. A., Yang, H., Dwyer, B. G., Simanauskaite, J., Tse, J., Abuzaid, H. Z., Krokhotin, A., et al. (2024) · Science · doi:10.1126/science.adl5361 · Cited by 80 · see citing works
Self-citationOncogenic CDK13 mutations impede nuclear RNA surveillance
Insco, M. L., Abraham, B. J., Dubbury, S. J., Kaltheuner, I. H., Dust, S., Wu, C., Chen, K. Y., Liu, D., Bellaousov, S., Cox, A. M., et al. (2023) · Science · doi:10.1126/science.abn7625 · Cited by 65 · see citing works
Self-citationLive imaging of transcription sites using an elongating RNA polymerase II–specific probe
Uchino, S., Ito, Y., Sato, Y., Handa, T., Ohkawa, Y., Tokunaga, M., & Kimurâ, H. (2021) · The Journal of Cell Biology · doi:10.1083/jcb.202104134 · Cited by 58 · see citing works
The Promise and Current Status of CDK12/13 Inhibition for the Treatment of Cancer
Tadesse, S., Duckett, D. R., & Monastyrskyi, A. (2020) · Future Medicinal Chemistry · doi:10.4155/fmc-2020-0240 · Cited by 59 · see citing works
Dual Inhibition of CDK12/CDK13 Targets Both Tumor and Immune Cells in Ovarian Cancer
Cheng, L., Zhou, S., Zhou, S., Shi, K., Cheng, Y., Cai, M., Ye, K., Lin, L., Zhang, Z., Jia, C., et al. (2022) · Cancer Research · doi:10.1158/0008-5472.can-22-0222 · Cited by 54 · see citing works
Velychko, T., Mohammad, E., Vicens, I. F., Parfentev, I., Werner, M., Studniarek, C., Schwalb, B., Urlaub, H., Murphy, S., Cramer, P., et al. (2024) · Molecular Cell · doi:10.1016/j.molcel.2024.05.007 · Cited by 52 · see citing works
Cesari, E., Ciucci, A., Pieraccioli, M., Caggiano, C., Nero, C., Bonvissuto, D., Sillano, F., Buttarelli, M., Piermattei, A., Loverro, M., et al. (2023) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-023-02682-5 · Cited by 49 · see citing works
Houles, T., Boucher, J., Lavoie, G., MacLeod, G., Lin, S., Angers, S., & Roux, P. P. (2023) · Cell Death Discovery · doi:10.1038/s41420-023-01754-x · Cited by 49 · see citing works
Riess, C., Irmscher, N., Salewski, I., Strüder, D., Classen, C.-F., Große-Thie, C., Junghanß, C., & Maletzki, C. (2020) · Cancer and Metastasis Reviews · doi:10.1007/s10555-020-09940-4 · Cited by 47 · see citing works
Naro, C., Bielli, P., & Sette, C. (2021) · FEBS Journal · doi:10.1111/febs.16057 · Cited by 47 · see citing works
Cyclin‐dependent kinases: Masters of the eukaryotic universe
Pluta, A. J., Studniarek, C., Murphy, S., & Norbury, C. J. (2023) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1816 · Cited by 45 · see citing works
Tien, J. C.-Y., Luo, J., Chang, Y., Zhang, Y., Cheng, Y., Wang, X., Yang, J., Mannan, R., Mahapatra, S., Shah, P., et al. (2024) · Cell Reports Medicine · doi:10.1016/j.xcrm.2024.101758 · Cited by 43 · see citing works
The PAF1 complex promotes 3′ processing of pervasive transcripts
Liu, X., Guo, Z., Han, J., Peng, B., Zhang, B., Li, H., Hu, X., David, C. J., & Chen, M. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.110519 · Cited by 35 · see citing works
Qiu, M., Yin, Z., Wang, H., Lei, L., Li, C., Cui, Y., Dai, R., Yang, P., Xiang, Y., Li, Q., et al. (2023) · Science Advances · doi:10.1126/sciadv.adf8698 · Cited by 36 · see citing works
Panzeri, V., Pieraccioli, M., Cesari, E., de la Grange, P., & Sette, C. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad258 · Cited by 33 · see citing works
Inhibition of pyrimidine biosynthesis targets protein translation in acute myeloid leukemia
So, J., Lewis, A. C., Smith, L. K., Stanley, K., Franich, R. L., Yoannidis, D., Pijpers, L., Dominguez, P. M., Hogg, S., Vervoort, S., et al. (2022) · EMBO Molecular Medicine · doi:10.15252/emmm.202115203 · Cited by 27 · see citing works
Self-citationCurti, L., Rohban, S., Bianchi, N., Croci, O., Andronache, A., Barozzi, S., Mattioli, M., Ricci, F., Pastori, E., Sberna, S., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-51229-5 · Cited by 31 · see citing works
Nuclear mRNA decay: regulatory networks that control gene expression
Rambout, X., & Maquat, L. E. (2024) · Nature Reviews Genetics · doi:10.1038/s41576-024-00712-2 · Cited by 29 · see citing works
Chemical inhibitors of transcription-associated kinases
Clopper, K. C., & Taatjes, D. J. (2022) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2022.102186 · Cited by 28 · see citing works
Ibáñez-Solé, O., Barrio, I., & Izeta, A. (2023) · iScience · doi:10.1016/j.isci.2023.106368 · Cited by 31 · see citing works
Targeting CDKs in cancer therapy: advances in PROTACs and molecular glues
Marei, H. E. S., Bedair, K., Hasan, A., Al-Mansoori, L., Gaiba, A., Morrione, A., Cenciarelli, C., & Giordano, A. (2025) · npj Precision Oncology · doi:10.1038/s41698-025-00931-8 · Cited by 30 · see citing works
Monteverde, T., Sahoo, S., Montagna, M. L., Magee, P., Shi, L., Lee, D. C. H., Sellers, R., Baker, A. R., Leong, H. S., Fassan, M., et al. (2021) · Cancer Research · doi:10.1158/0008-5472.can-20-1968 · Cited by 27 · see citing works
The phosphatase PP1 sustains global transcription by promoting RNA polymerase II pause release
Wang, Z., Song, A., Tao, B., Miao, M., Luo, Y.-Q., Wang, J., Yin, Z., Xiao, R., Zhou, X., Shang, X., et al. (2024) · Molecular Cell · doi:10.1016/j.molcel.2024.10.046 · Cited by 26 · see citing works
Fang, K., Huang, W., Sun, Y., Chen, T.-Q., Zeng, Z., Yang, Q., Pan, Q., Han, C., Sun, L.-Y., Luo, X., et al. (2020) · Genome biology · doi:10.1186/s13059-020-02186-x · Cited by 26 · see citing works
Current progress and novel strategies that target CDK12 for drug discovery
Lei, P., Zhang, J., Liao, P., Ren, C., Wang, J., & Wang, D. (2022) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2022.114603 · Cited by 26 · see citing works
Regan, K., & Izumi, K. (2023) · Human Genetics · doi:10.1007/s00439-023-02540-6 · Cited by 26 · see citing works
Targeting pre-mRNA splicing in cancers: roles, inhibitors, and therapeutic opportunities
Araki, S., Ohori, M., & Yugami, M. (2023) · Frontiers in Oncology · doi:10.3389/fonc.2023.1152087 · Cited by 27 · see citing works
Chang, Y., Wang, X., Yang, J., Tien, J. C.-Y., Mannan, R., Cruz, G., Zhang, Y., Vo, J. N., Magnuson, B., Mahapatra, S., et al. (2024) · Cell Reports Medicine · doi:10.1016/j.xcrm.2024.101752 · Cited by 24 · see citing works
Cacioppo, R., Gillis, A., Shlamovitz, I., Zeller, A., Castiblanco, D., Crisp, A., Haworth, B., Arabiotorre, A., Abyaneh, P., Bao, Y., et al. (2024) · Molecular Cell · doi:10.1016/j.molcel.2024.11.024 · Cited by 23 · see citing works
Rouxel, F., Relator, R., Kerkhof, J., McConkey, H., Levy, M. A., Dias, P., Barat‐Houari, M., Bednarek, N., Boute, O., Chatron, N., et al. (2022) · Genetics in Medicine · doi:10.1016/j.gim.2021.12.016 · Cited by 23 · see citing works
Regulation of gene expression by alternative polyadenylation in health and disease
Tian, B., Yu, S., & Zhang, Q. (2026) · Nature Reviews Genetics · doi:10.1038/s41576-025-00928-w · Cited by 23 · see citing works
CDK13 phosphorylates the translation machinery and promotes tumorigenic protein synthesis
Wu, C., Xie, T., Guo, Y., Wang, D., Qiu, M., Han, R., Qing, G., Liang, K.-W., & Liu, H.-D. (2023) · Oncogene · doi:10.1038/s41388-023-02653-2 · Cited by 21 · see citing works
(2025) · doi:10.1016/j.molcel.2025.04.012 · Cited by 21 · see citing works
Self-citationKimurâ, H., & Sato, Y. (2022) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2022.01.002 · Cited by 19 · see citing works
Emerging roles of cyclin-dependent kinase 7 in health and diseases
Belew, M. D., Chen, J., & Cheng, Z. (2024) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2024.09.004 · Cited by 19 · see citing works
Gui, F., Jiang, B., Jiang, J., He, Z., Tsujino, T., Takai, T., Arai, S., Pana, C., Köllermann, J. W., Bradshaw, G. A., et al. (2025) · Science Advances · doi:10.1126/sciadv.adu0847 · Cited by 20 · see citing works
SETD1A regulates transcriptional pause release of heme biosynthesis genes in leukemia
Hoshii, T., Perlee, S. C., Kikuchi, S., Rahmutulla, B., Fukuyo, M., Masuda, T., Ohtsuki, S., Soga, T., Nabet, B., & Kaneda, A. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.111727 · Cited by 18 · see citing works
Coming of Age: Targeting Cyclin K in Cancers
Xiao, Y., & Dong, J. (2023) · Cells · doi:10.3390/cells12162044 · Cited by 18 · see citing works
Ang, H. X., Sutiman, N., Deng, X. L., Liu, A., Cerda-Smith, C. G., Hutchinson, H. M., Kim, H., Bartelt, L. C., Chen, Q., Barrera, A., et al. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2221448120 · Cited by 17 · see citing works
The reversible inhibitor SR-4835 binds Cdk12/cyclin K in a noncanonical G-loop conformation
Schmitz, M., Kaltheuner, I. H., Anand, K., Düster, R., Moecking, J., Monastyrskyi, A., Duckett, D. R., Roush, W. R., & Geyer, M. (2023) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2023.105501 · Cited by 19 · see citing works
Self-citationTranscription by RNA polymerase II and the CTD-chromatin crosstalk
Singh, N., Asalam, M., Ansari, M. O., Gerasimova, N. S., Studitsky, V. M., & Akhtar, M. S. (2022) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2022.02.039 · Cited by 18 · see citing works
Pitolli, C., Marini, A., Guerra, M., Pieraccioli, M., Marabitti, V., Palluzzi, F., Giacò, L., Tamburrini, G., Cecconi, F., Nazio, F., et al. (2023) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-023-02790-2 · Cited by 16 · see citing works
Chai, Q., Li, S., Collins, M. K., Li, R., Ahmad, I., Johnson, S. F., Frabutt, D. A., Yang, Z., Shen, X., Sun, L., et al. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.109514 · Cited by 17 · see citing works
Chen, J., Chen, Y., Du, X., Liu, G., Fei, X., Peng, J. R., Zhang, X. Y., Xiao, F., Wang, X. B., Yang, X. H., et al. (2020) · Frontiers in Cell and Developmental Biology · doi:10.2139/ssrn.3746264 · Cited by 17 · see citing works
CDK13-Mediated Cell Cycle Disorder Promotes Tumorigenesis of High HMGA2 Expression Gastric Cancer
Wu, Z., Wang, M., Li, F., Wang, F., Jia, J., Feng, Z., Huo, X., Yang, J., Wen, J., Sa, R., et al. (2021) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2021.707295 · Cited by 16 · see citing works
van der Noord, V. E., van de Water, B., & Dévédec, S. E. L. (2022) · Cancers · doi:10.3390/cancers14184353 · Cited by 17 · see citing works
Du, X., Qin, W., Yang, C., Dai, L., San, M., Xia, Y., Zhou, S., Wang, M., Wu, S., Zhang, S., et al. (2024) · Genome biology · doi:10.1186/s13059-024-03242-6 · Cited by 16 · see citing works
Reciprocal Links between Pre-messenger RNA 3′-End Processing and Genome Stability
Dutertre, M., Sfaxi, R., & Vagner, S. (2021) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2021.01.009 · Cited by 15 · see citing works
Control of non-productive RNA polymerase II transcription via its early termination in metazoans
Rouvière, J. O., Lykke‐Andersen, S., & Jensen, T. H. (2022) · Biochemical Society Transactions · doi:10.1042/bst20201140 · Cited by 15 · see citing works
CDK12/13 inactivation triggers STING-mediated antitumor immunity in preclinical models
Bao, Y., Chang, Y., Tien, J., Cruz, G., Yang, F., Mannan, R., Mahapatra, S., Paturu, R., Cao, X.-H., Su, F.-Y., et al. (2025) · Journal of Clinical Investigation · doi:10.1172/jci193745 · Cited by 9 · see citing works
Research progress of anticancer drugs targeting CDK12
Yan, Z., Du, Y., Zhang, H., Zheng, Y., Lv, H., Dong, N., & He, F. (2023) · RSC Medicinal Chemistry · doi:10.1039/d3md00004d · Cited by 13 · see citing works
Poly(A) tale: From A to A; RNA polyadenylation in prokaryotes and eukaryotes
Mofayezi, A., Jadaliha, M., Zangeneh, F., & Khoddami, V. (2024) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1837 · Cited by 12 · see citing works
Ghosh, P., Schmitz, M., Pandurangan, T., Tadesse, S., Chan, S. C., Mosior, J., Sun, L., Palve, V. C., Grassie, D., Anand, K., et al. (2024) · RSC Chemical Biology · doi:10.1039/d4cb00190g · Cited by 12 · see citing works
Self-citationTroester, S., Eder, T., Wukowits, N., Piontek, M., Fernández‐Pernas, P., Schmoellerl, J., Haladik, B., Manhart, G., Allram, M., Maurer‐Granofszky, M., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-59930-9 · Cited by 11 · see citing works
Yamazaki, T., Liu, L., & Manley, J. L. (2021) · Transcription · doi:10.1080/21541264.2021.2009421 · Cited by 12 · see citing works
Bai, Y., Liu, Z., Li, Y., Zhao, H., Lai, C., Zhao, S., Chen, K., Luo, C., Yang, X., & Wang, F. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c01697 · Cited by 12 · see citing works
Devlin, J., Martin, B., Bartonicek, N., Ting, K. E., Fan, Z., Todorovski, I., Bjelosevic, F., Verschoor, S., Ciccone, A., Trapani, J. A., et al. (2025) · Molecules and Cells · doi:10.1016/j.molcel.2025.08.001 · Cited by 10 · see citing works
Self-citationA role for human senataxin in contending with pausing and backtracking during transcript elongation
Han, Z., Fu, S., Johansen, J. V., Martínez, D. L., Lou, J., Boissière, T., He, D., Blears, D., Olthof, A. M., Dirac-Svejstrup, A. B., et al. (2025) · Molecular Cell · doi:10.1016/j.molcel.2025.10.019 · Cited by 11 · see citing works
Self-citationTien, J. C.-Y., Zhai, Y., WU, R. T., Zhang, Y., Chang, Y., Cheng, Y., Todd, A. J., Wheeler, C. E., Li, S., Mannan, R., et al. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2426909122 · Cited by 11 · see citing works
Global control of RNA polymerase II
Gillis, A., & Berry, S. M. (2024) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2024.195024 · Cited by 10 · see citing works
Targeting transcriptional regulators for treatment of anaplastic thyroid cancer
Lee, W. K. (2021) · Journal of Cancer Metastasis and Treatment · doi:10.20517/2394-4722.2021.58 · Cited by 11 · see citing works
Wang, Z., Himanen, S. V., Haikala, H. M., Friedel, C. C., Vihervaara, A., & Barborič, M. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad792 · Cited by 11 · see citing works
Discovery of small molecule degraders for modulating cell cycle
Wang, L., Yang, Z., Li, G., Liu, Y., Ai, C., & Rao, Y. (2023) · Frontiers of Medicine · doi:10.1007/s11684-023-1027-5 · Cited by 10 · see citing works
Pitolli, C., Marini, A., Sette, C., & Pagliarini, V. (2024) · Cell Death and Differentiation · doi:10.1038/s41418-024-01413-3 · Cited by 10 · see citing works
HIV-1 virological synapse formation enhances infection spread by dysregulating Aurora Kinase B
Bruce, J. W., Park, E., Magnano, C. S., Horswill, M. A., Richards, A., Potts, G. K., Hebert, A. S., Islam, N., Coon, J. J., Gitter, A., et al. (2023) · PLoS Pathogens · doi:10.1371/journal.ppat.1011492 · Cited by 10 · see citing works
Analysis of CDK12 alterations in a pan‐cancer database
Pan, E., Cabal, A., Javier-DesLoges, J. F., Patel, D. N., Panian, J. A., Lee, S., Shaya, J. A., Nonato, T. K., Xu, X., Stewart, T. F., et al. (2021) · Cancer Medicine · doi:10.1002/cam4.4483 · Cited by 9 · see citing works
Cárdenas‐León, C. G., Klaas, M., Mäemets‐Allas, K., Arak, T., Eller, M., & Jaks, V. (2022) · Experimental Cell Research · doi:10.1016/j.yexcr.2022.113111 · Cited by 10 · see citing works
Lalu, A. C., Lubaba, F., Gopalakrishnan, A. P., Mahin, A., Subair, S., Shivamurthy, P. B., Rajeev, A. C., & Raju, R. (2025) · DNA and Cell Biology · doi:10.1089/dna.2025.0088 · Cited by 9 · see citing works
Zheng, S., Chen, Y., Zhu, Z., Li, N., He, C., Koeffler, H. P., Han, X., Wei, Q., & Xu, L. (2025) · Journal of Zhejiang University SCIENCE B · doi:10.1631/jzus.b2500021 · Cited by 9 · see citing works
CDK7–CDK11 axis in spliceosome regulation and pre-mRNA splicing
Rájecký, M., Gajdušková, P., Maník, P., Hluchý, M., Hegedűsová, E., Kryštofová, K., Potěšil, D., Martínková, P., Slabá, Z., Khirsariya, P., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf1343 · Cited by 9 · see citing works
Chilà, R., Chiappa, M., Guffanti, F., Panini, N., Conconi, D., Rinaldi, A., Cascione, L., Bertoni, F., Fratelli, M., & Damia, G. L. M. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.903536 · Cited by 9 · see citing works
Moreno, R. Y., Panina, S., & Zhang, Y. (2025) · RSC Chemical Biology · doi:10.1039/d4cb00212a · Cited by 8 · see citing works
Sui, Y., Wang, T., Mei, Y., Zhu, Y., Jiang, W., Shen, J., Yan, S., Lu, W., Zhao, K., Mo, J., et al. (2024) · Cancer Research · doi:10.1158/0008-5472.can-23-3306 · Cited by 9 · see citing works
Guo, X., Chen, H., Zhou, Y., Shen, L., Wu, S., & Chen, Y. (2022) · Expert Opinion on Investigational Drugs · doi:10.1080/13543784.2022.2097067 · Cited by 7 · see citing works
Cdk12 Maintains the Axon Initial Segment Through Actin Remodeling
Townsend, L., Lucas-Clarke, H. J., Maddison, D. C., Jones, K., Amadio, L., Jefferson, A., Chughtai, U., Bis‐Brewer, D. M., Zuchner, S. L., Allen, N. D., et al. (2022) · Cell Death Discovery · doi:10.1038/s41420-023-01642-4 · Cited by 8 · see citing works
Jurcik, J., Siváková, B., Čipáková, I., Selicky, T., Stupenova, E., Jurcik, M., Osadská, M., Baráth, P., & Čipák, L. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21207637 · Cited by 8 · see citing works
Roles of CDK12 mutations in PCa development and treatment
Jiang, C., Hong, Z., Liu, S., Hong, Z., & Dai, B. (2024) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2024.189247 · Cited by 7 · see citing works
Zhang, G., Lan, B., Zhang, X., Lin, M., Liu, Y., Chen, J. S., & Guo, F. (2023) · Journal for ImmunoTherapy of Cancer · doi:10.1136/jitc-2022-006483 · Cited by 7 · see citing works
Ottaviani, D., Ola, M., Allotta, A., Chaibi, Y. M., Hickey, S., Jagušt, P., Cosgrove, N. S., Cocchiglia, S., Bane, F. T., Fallon, R., et al. (2025) · JNCI Journal of the National Cancer Institute · doi:10.1093/jnci/djaf295 · Cited by 6 · see citing works
Therapeutic Discovery for Chromatin Complexes: Where Do We Stand?
Owens, D. D. G., Maitland, M. E. R., Arrowsmith, C. H., & Baršytė-Lovejoy, D. (2024) · Annual Review of Cancer Biology · doi:10.1146/annurev-cancerbio-062822-110356 · Cited by 7 · see citing works
Carnielli, J. B. T., Brannigan, J. A., Jones, N. G., Ramos, P. Z., Couñago, R. M., Sjö, P., Lima, A. P. C. A., Wilkinson, A. J., & Mottram, J. C. (2026) · PLoS Pathogens · doi:10.1371/journal.ppat.1014194 · Cited by 6 · see citing works
CDK12 /13 dual inhibitors are potential therapeutics for acute myeloid leukemia
Savoy, L., Long, N., Lee, H., Chen, R., Allen, B., Lin, H., Tognon, C. E., Malhotra, S. V., Tyner, J. W., & Zhang, H. (2023) · British Journal of Haematology · doi:10.1111/bjh.18843 · Cited by 6 · see citing works
Gajdušková, P., Mozos, I. R. D. L., Hluchý, M., Myšková, A., Zábrady, K., Maník, P., Dragišić, N., Hanáková, K., Potěšil, D., Bologna, S., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-71119-2 · Cited by 5 · see citing works
Trans-Regulation of Alternative PD-L1 mRNA Processing by CDK12 in Non-Small-Cell Lung Cancer Cells
Larsen, T. V., Maansson, C. T., Daugaard, T. F., Andresen, B. S., Sørensen, B. S., & Nielsen, A. L. (2023) · Cells · doi:10.3390/cells12242844 · Cited by 5 · see citing works
Li, Z., Li, X., Seebacher, N. A., Liu, X., Wu, W., Yu, S., Hornicek, F. J., Huang, C., & Duan, Z. (2024) · Carcinogenesis · doi:10.1093/carcin/bgae051 · Cited by 5 · see citing works
- Authors
- Fan, Z., Devlin, J. R., Hogg, S. J., Doyle, M. A., Harrison, P. F., Todorovski, I., Cluse, L. A., Knight, D. A., Sandow, J. J., Gregory, G., Fox, A., Beilharz, T. H., Kwiatkowski, N., Scott, N. E., Vidakovic, A. T., Kelly, G. P., Svejstrup, J. Q., Geyer, M., Gray, N. S., Vervoort, S. J., & Johnstone, R. W.
- Affiliations
- The University of Melbourne (AU)
- Peter MacCallum Cancer Centre (AU)
- Monash University (AU)
- Harvard University (US)
- Mechanisms of Transcription Laboratory, The Francis Crick Institute, London NW1 1AT, UK.
- The Francis Crick Institute (GB)
- University of Bonn (DE)
- Corresponding author
- Fan, Zheng
- Devlin, Jennifer R.
- Vervoort, Stephin J.
- Johnstone, Ricky W.
- ORCID
- Fan, Zheng
- Devlin, Jennifer R.
- Hogg, Simon J.
- Doyle, Maria A.
- Harrison, Paul F.
- Todorovski, Izabela
- Cluse, Leonie A.
- Knight, Deborah A.
- Sandow, Jarrod J.
- Gregory, Gareth
- Fox, Andrew
- Beilharz, Traude H.
- Kwiatkowski, Nicholas
- Scott, Nichollas E.
- Kelly, Gavin P.
- Svejstrup, Jesper Q.
- Geyer, Matthias
- Gray, Nathanael S.
- Vervoort, Stephin J.
- Johnstone, Ricky W.
- Venue
- Science Advances
- Published
- 2020-05
- Volume
- 6
- Issue
- 18
- ISSN
- 2375-2548 (ISSN-L)
- PMC
- PMC7190357
- OpenAlex
- W3021695369
- Cited by
- 164
- References
- 44
- Citations by year
- 2026: 24 · 2025: 28 · 2024: 31 · 2023: 29 · 2022: 25 · 2021: 18 · 2020: 8 · 2019: 1
- FWCI
- 6.73
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by-nc
- Locations
- Science Advances (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Monash University Research Portal (Monash University) (submittedVersion, other-oa)
- Figshare (submittedVersion, cc-by-nc)
- Minerva Access (University of Melbourne) (submittedVersion, cc-by-nc)
- Funders
- Victorian Cancer Agency
- National Health and Medical Research Council
- Cancer Council Victoria
- The Kids Cancer Project
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Keywords
- CDK12, CDK13, cyclin-dependent kinases, RNA polymerase II, transcription elongation, RNA polymerase II processivity, C-terminal domain phosphorylation, alternative polyadenylation, kinase redundancy, cell death, DNA damage response, growth signaling
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review