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A brain proteomic signature of incipient Alzheimer’s disease in young APOE ε4 carriers identifies novel drug targets

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Roberts, Jackson A., Varma, Vijay R., An, Yang, Varma, Sudhir, Candia, Julián, Fantoni, Giovanna, Tiwari, Vinod, Anerillas, Carlos +23 more·2021·Science Advances

Abstract

Brain proteins altered in young APOE ε4 carriers are found decades later in Alzheimer’s disease and present novel drug targets.

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  • The iAD signature is a set of proteins highly expressed in young E4 carrier brains but reduced in AD brains.

    “The iAD signature is a set of proteins highly expressed in young E4 carrier brains but reduced in AD brains (Roberts et al., 2021).”

    From APOE4 reshapes the lipid droplet proteome and modulates microglial inflammatory responses (2025) · cites this paper as Roberts et al., 2021

    The Results (Stage 1: Discovery of the incipient AD signature) identify 25 signature proteins and report that nearly all were increased in young APOE ε4 carriers relative to noncarriers and reduced in AD relative to controls. The claim omits exceptions: one protein was reduced in young carriers, and TBP did not show a consistent direction across the two AD cohorts. (LLM, conf=0.90)

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  1. [1]L. A. Farrer, L. A. Cupples, J. L. Haines, B. Hyman, W. A. Kukull, R. Mayeux, R. H. Myers, M. A. Pericak-Vance, N. Risch, C. M. van Duijn, Effects of age, sex, and ethnicity on the association between apolipoprotein E genotype and Alzheimer disease. A meta-analysis. APOE and Alzheimer Disease Meta Analysis Consortium. JAMA 278, 1349– 1356 (1997). 9343467
  2. [3]E. Genin, D. Hannequin, D. Wallon, K. Sleegers, M. Hiltunen, O. Combarros, M. J. Bullido, S. Engelborghs, P. De Deyn, C. Berr, F. Pasquier, B. Dubois, G. Tognoni, N. Fiévet, N. Brouwers, K. Bettens, B. Arosio, E. Coto, M. Del Zompo, I. Mateo, J. Epelbaum, A. Frank-Garcia, S. Helisalmi, E. Porcellini, A. Pilotto, P. Forti, R. Ferri, E. Scarpini, G. Siciliano, V. Solfrizzi, S. Sorbi, G. Spalletta, F. Valdivieso, S. Vepsäläinen, V. Alvarez, P. Bosco, M. Mancuso, F. Panza, B. Nacmias, P. Bossù, O. Hanon, P. Piccardi, G. Annoni, D. Seripa, D. Galimberti, F. Licastro, H. Soininen, J.-F. Dartigues, M. I. Kamboh, C. Van Broeckhoven, J. C. Lambert, P. Amouyel, D. Campion, APOE and Alzheimer disease: A major gene with semi-dominant inheritance. Mol. Psychiatry 16, 903– 907 (2011). 21556001 PMC3162068
  3. [5]E. H. Corder, A. M. Saunders, W. J. Strittmatter, D. E. Schmechel, P. C. Gaskell, G. W. Small, A. D. Roses, J. L. Haines, M. A. Pericak-Vance, Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer’s disease in late onset families. Science 261, 921– 923 (1993). 8346443
  4. [6]W. J. Jansen, R. Ossenkoppele, D. L. Knol, B. M. Tijms, P. Scheltens, F. R. J. Verhey, P. J. Visser; Amyloid Biomarker Study Group, P. Aalten, D. Aarsland, D. Alcolea, M. Alexander, I. S. Almdahl, S. E. Arnold, I. Baldeiras, H. Barthel, B. N. M. van Berckel, K. Bibeau, K. Blennow, D. J. Brooks, M. A. van Buchem, V. Camus, E. Cavedo, K. Chen, G. Chetelat, A. D. Cohen, A. Drzezga, S. Engelborghs, A. M. Fagan, T. Fladby, A. S. Fleisher, W. M. van der Flier, L. Ford, S. Förster, J. Fortea, N. Foskett, K. S. Frederiksen, Y. Freund-Levi, G. B. Frisoni, L. Froelich, T. Gabryelewicz, K. D. Gill, O. Gkatzima, E. Gómez-Tortosa, M. F. Gordon, T. Grimmer, H. Hampel, L. Hausner, S. Hellwig, S.-K. Herukka, H. Hildebrandt, L. Ishihara, A. Ivanoiu, W. J. Jagust, P. Johannsen, R. Kandimalla, E. Kapaki, A. Klimkowicz-Mrowiec, W. E. Klunk, S. Köhler, N. Koglin, J. Kornhuber, M. G. Kramberger, K. Van Laere, S. M. Landau, D. Y. Lee, M. de Leon, V. Lisetti, A. Lleó, K. Madsen, W. Maier, J. Marcusson, N. Mattsson, A. de Mendonça, O. Meulenbroek, P. T. Meyer, M. A. Mintun, V. Mok, J. L. Molinuevo, H. M. Møllergård, J. C. Morris, B. Mroczko, S. Van der Mussele, D. L. Na, A. Newberg, A. Nordberg, A. Nordlund, G. P. Novak, G. P. Paraskevas, L. Parnetti, G. Perera, O. Peters, J. Popp, S. Prabhakar, G. D. Rabinovici, I. H. G. B. Ramakers, L. Rami, C. R. de Oliveira, J. O. Rinne, K. M. Rodrigue, E. Rodríguez-Rodríguez, C. M. Roe, U. Rot, C. C. Rowe, E. Rüther, O. Sabri, P. Sanchez-Juan, I. Santana, M. Sarazin, J. Schröder, C. Schütte, S. W. Seo, F. Soetewey, H. Soininen, L. Spiru, H. Struyfs, C. E. Teunissen, M. Tsolaki, R. Vandenberghe, M. M. Verbeek, V. L. Villemagne, S. J. B. Vos, L. J. C. van Waalwijk van Doorn, G. Waldemar, A. Wallin, Å. K. Wallin, J. Wiltfang, D. A. Wolk, M. Zboch, H. Zetterberg, Prevalence of cerebral amyloid pathology in persons without dementia: A meta-analysis. JAMA 313, 1924– 1938 (2015). 25988462 PMC4486209
  5. [7]O. Pletnikova, Y. Kageyama, G. Rudow, K. D. La Clair, M. Albert, B. J. Crain, J. Tian, D. Fowler, J. C. Troncoso, The spectrum of preclinical Alzheimer’s disease pathology and its modulation by ApoE genotype. Neurobiol. Aging 71, 72– 80 (2018). 30099348
  6. [8]E. M. Reiman, K. Chen, G. E. Alexander, R. J. Caselli, D. Bandy, D. Osborne, A. M. Saunders, J. Hardy, Functional brain abnormalities in young adults at genetic risk for late-onset Alzheimer’s dementia. Proc. Natl. Acad. Sci. U.S.A. 101, 284– 289 (2004). 14688411 PMC314177
  7. [9]P. Shaw, J. P. Lerch, J. C. Pruessner, K. N. Taylor, A. Rose, D. Greenstein, L. Clasen, A. Evans, J. L. Rapoport, J. N. Giedd, Cortical morphology in children and adolescents with different apolipoprotein E gene polymorphisms: An observational study. Lancet Neurol. 6, 494– 500 (2007). 17509484
  8. [10]J. Nao, H. Sun, Q. Wang, S. Ma, S. Zhang, X. Dong, Y. Ma, X. Wang, D. Zheng, Adverse effects of the apolipoprotein E epsilon4 allele on episodic memory, task switching and gray matter volume in healthy young adults. Front. Hum. Neurosci. 11, 346 (2017). 28706481 PMC5489690
  9. [11]M. Wang, Y. Zhao, B. Zhang, Efficient test and visualization of multi-set intersections. Sci. Rep. 5, 16923 (2015). 26603754 PMC4658477
  10. [12]S. Oddo, A. Caccamo, J. D. Shepherd, M. P. Murphy, T. E. Golde, R. Kayed, R. Metherate, M. P. Mattson, Y. Akbari, F. M. La Ferla, Triple-transgenic model of Alzheimer’s disease with plaques and tangles: Intracellular Abeta and synaptic dysfunction. Neuron 39, 409– 421 (2003). 12895417
  11. [13]Y. Kageyama, A. Saito, O. Pletnikova, G. L. Rudow, Y. Irie, Y. An, K. Murakami, K. Irie, S. M. Resnick, D. R. Fowler, L. J. Martin, J. C. Troncoso, Amyloid β toxic conformer has dynamic localization in the human inferior parietal cortex in absence of amyloid plaques. Sci. Rep. 8, 16895 (2018). 30442978 PMC6237870
  12. [14]S. S. Mirra, A. Heyman, D. M. Keel, S. M. Sumi, B. J. Crain, L. M. Brownlee, F. S. Vogel, J. P. Hughes, G. van Belle, L. Berg, The Consortium to Establish a Registry for Alzheimer’s Disease (CERAD). Part II. Standardization of the neuropathologic assessment of Alzheimer’s disease. Neurology 41, 479– 486 (1991). 2011243
  13. [16]H. Mathys, J. Davila-Velderrain, Z. Peng, F. Gao, S. Mohammadi, J. Z. Young, M. Menon, L. He, F. Abdurrob, X. Jiang, A. J. Martorell, R. M. Ransohoff, B. P. Hafler, D. A. Bennett, M. Kellis, L.-H. Tsai, Single-cell transcriptomic analysis of Alzheimer’s disease. Nature 570, 332– 337 (2019). 31042697 PMC6865822
  14. [18]A. D’Angelo, N. Sobhani, R. Chapman, S. Bagby, C. Bortoletti, M. Traversini, K. Ferrari, L. Voltolini, J. Darlow, G. Roviello, Focus on ROS1-positive Non-Small Cell Lung Cancer (NSCLC): Crizotinib, resistance mechanisms and the newer generation of targeted therapies. Cancers 12, 3293 (2020). 33172113 PMC7694780
  15. [19]FDA grants orphan drug designation for napabucasin. Oncol. Times 38, 25 (2016).
  16. [20]P. Rousselot, L. Mollica, J. Guilhot, A. Guerci, F. E. Nicolini, G. Etienne, L. Legros, A. Charbonnier, V. Coiteux, C. Dartigeas, M. Escoffre-Barbe, L. Roy, P. Cony-Makhoul, V. Dubruille, M. Gardembas, F. Huguet, D. Réa, E. Cayssials, F. Guilhot, A. Bergeron, M. Molimard, F.-X. Mahon, J.-M. Cayuela, L. Busque, S. Bouchet, Dasatinib dose optimisation based on therapeutic drug monitoring reduces pleural effusion rates in chronic myeloid leukaemia patients. Br. J. Haematol. 194, 393– 402 (2021). 34195988
  17. [22]A. Schroeder, J. de Wit, Leucine-rich repeat-containing synaptic adhesion molecules as organizers of synaptic specificity and diversity. Exp. Mol. Med. 50, 1– 9 (2018). PMC5938020 29628503
  18. [23]S. Lincoln, M. Allen, C. L. Cox, L. P. Walker, K. Malphrus, Y. Qiu, T. Nguyen, C. Rowley, N. Kouri, J. Crook, V. S. Pankratz, S. Younkin, L. Younkin, M. Carrasquillo, F. Zou, S. O. Abdul-Hay, W. Springer, S. B. Sando, J. O. Aasly, M. Barcikowska, Z. K. Wszolek, J. M. Lewis, D. Dickson, N. R. Graff-Radford, R. C. Petersen, E. Eckman, S. G. Younkin, N. Ertekin-Taner, LRRTM3 interacts with APP and BACE1 and has variants associating with late-onset Alzheimer’s disease (LOAD). PLOS ONE 8, e64164 (2013). 23750206 PMC3672107
  19. [24]J. Majercak, W. J. Ray, A. Espeseth, A. Simon, X.-P. Shi, C. Wolffe, K. Getty, S. Marine, E. Stec, M. Ferrer, B. Strulovici, S. Bartz, A. Gates, M. Xu, Q. Huang, L. Ma, P. Shughrue, J. Burchard, D. Colussi, B. Pietrak, J. Kahana, D. Beher, T. Rosahl, M. Shearman, D. Hazuda, A. B. Sachs, K. S. Koblan, G. R. Seabrook, D. J. Stone, LRRTM3 promotes processing of amyloid-precursor protein by BACE1 and is a positional candidate gene for late-onset Alzheimer’s disease. Proc. Natl. Acad. Sci. U.S.A. 103, 17967– 17972 (2006). 17098871 PMC1635650
  20. [25]N.-Y. Kim, M.-H. Cho, S.-H. Won, H.-J. Kang, S.-Y. Yoon, D.-H. Kim, Sorting nexin-4 regulates β-amyloid production by modulating β-site-activating cleavage enzyme-1. Alzheimers Res. Ther. 9, 4 (2017). 28109317 PMC5251330
  21. [26]W. H. Toh, P. Z. C. Chia, M. I. Hossain, P. A. Gleeson, GGA1 regulates signal-dependent sorting of BACE1 to recycling endosomes, which moderates Aβ production. Mol. Biol. Cell 29, 191– 208 (2018). 29142073 PMC5909931
  22. [27]L. Sanchez, V. Alvarez, P. González, I. González, R. Alvarez, E. Coto, Variation in the LRP-associated protein gene (LRPAP1) is associated with late-onset Alzheimer disease. Am. J. Med. Genet. 105, 76– 78 (2001). 11425005
  23. [28]E. Van Uden, M. Mallory, I. Veinbergs, M. Alford, E. Rockenstein, E. Masliah, Increased extracellular amyloid deposition and neurodegeneration in human amyloid precursor protein transgenic mice deficient in receptor-associated protein. J. Neurosci. 22, 9298– 9304 (2002). 12417655 PMC6758061
  24. [29]C. Reitz, C. Conrad, K. Roszkowski, R. S. Rogers, R. Mayeux, Effect of genetic variation in LRRTM3 on risk of Alzheimer disease. Arch. Neurol. 69, 894– 900 (2012). 22393166 PMC3391336
  25. [30]P. Pandey, S. Pradhan, B. Mittal, LRP-associated protein gene (LRPAP1) and susceptibility to degenerative dementia. Genes Brain Behav. 7, 943– 950 (2008). 18721259
  26. [31]E. Anguita, A. Villalobo, Src-family tyrosine kinases and the Ca2+ signal. Biochim. Biophys. Acta Mol. Cell Res. 1864, 915– 932 (2017). 27818271
  27. [32]W. Lucchesi, K. Mizuno, K. P. Giese, Novel insights into CaMKII function and regulation during memory formation. Brain Res. Bull. 85, 2– 8 (2011). 21070840
  28. [33]M. P. Sajan, B. C. Hansen, M. G. Higgs, C. R. Kahn, U. Braun, M. Leitges, C. R. Park, D. M. Diamond, R. V. Farese, Atypical PKC, PKClambda/iota, activates βsecretase and increases Abeta1-40/42 and phospho-tau in mouse brain and isolated neuronal cells, and may link hyperinsulinemia and other aPKC activators to development of pathological and memory abnormalities in Alzheimer’s disease. Neurobiol. Aging 61, 225– 237 (2018). 29032894 PMC5705272
  29. [36]A. Briner, J. Gotz, J. C. Polanco, Fyn kinase controls tau aggregation in vivo. Cell Rep. 32, 108045 (2020). 32814048
  30. [37]A. Ghosh, K. P. Giese, Calcium/calmodulin-dependent kinase II and Alzheimer’s disease. Mol. Brain 8, 78 (2015). 26603284 PMC4657223
  31. [38]X. Hu, A. Addlagatta, J. Lu, B. W. Matthews, J. O. Liu, Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression. Proc. Natl. Acad. Sci. U.S.A. 103, 18148– 18153 (2006). 17114291 PMC1838721
  32. [39]J. Li, S. Hu, L. Zhou, L. Ye, X. Wang, J. Ho, W. Ho, Interferon lambda inhibits herpes simplex virus type I infection of human astrocytes and neurons. Glia 59, 58– 67 (2011). 20878770 PMC3082435
  33. [40]T. L. Thurston, M. P. Wandel, N. von Muhlinen, A. Foeglein, F. Randow, Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion. Nature 482, 414– 418 (2012). 22246324 PMC3343631
  34. [41]B. Falcon, J. Noad, H. McMahon, F. Randow, M. Goedert, Galectin-8-mediated selective autophagy protects against seeded tau aggregation. J. Biol. Chem. 293, 2438– 2451 (2018). 29282296 PMC5818177
  35. [42]S. Jiang, K. Bhaskar, Degradation and transmission of tau by autophagic-endolysosomal networks and potential therapeutic targets for tauopathy. Front. Mol. Neurosci. 13, 586731 (2020). 33177989 PMC7596180
  36. [43]H. Song, W. Kim, S. H. Kim, K. T. Kim, VRK3-mediated nuclear localization of HSP70 prevents glutamate excitotoxicity-induced apoptosis and Abeta accumulation via enhancement of ERK phosphatase VHR activity. Sci. Rep. 6, 38452 (2016). 27941812 PMC5150261
  37. [44]E. R. Tuminello, S. D. Han, The apolipoprotein e antagonistic pleiotropy hypothesis: Review and recommendations. Int. J. Alzheimers Dis. 2011, 726197 (2011). 21423560 PMC3056453
  38. [45]M. P. Vitek, C. M. Brown, C. A. Colton, APOE genotype-specific differences in the innate immune response. Neurobiol. Aging 30, 1350– 1360 (2009). 18155324 PMC2782461
  39. [46]S. Corbett, A. Courtiol, V. Lummaa, J. Moorad, S. Stearns, The transition to modernity and chronic disease: Mismatch and natural selection. Nat. Rev. Genet. 19, 419– 430 (2018). 29743650
  40. [47]B. C. Trumble, J. Stieglitz, A. D. Blackwell, H. Allayee, B. Beheim, C. E. Finch, M. Gurven, H. Kaplan, Apolipoprotein E4 is associated with improved cognitive function in Amazonian forager-horticulturalists with a high parasite burden. FASEB J. 31, 1508– 1515 (2017). 28031319 PMC5349792
  41. [48]E. C. B. Johnson, E. B. Dammer, D. M. Duong, L. Ping, M. Zhou, L. Yin, L. A. Higginbotham, A. Guajardo, B. White, J. C. Troncoso, M. Thambisetty, T. J. Montine, E. B. Lee, J. Q. Trojanowski, T. G. Beach, E. M. Reiman, V. Haroutunian, M. Wang, E. Schadt, B. Zhang, D. W. Dickson, N. Ertekin-Taner, T. E. Golde, V. A. Petyuk, P. L. De Jager, D. A. Bennett, T. S. Wingo, S. Rangaraju, I. Hajjar, J. M. Shulman, J. J. Lah, A. I. Levey, N. T. Seyfried, Large-scale proteomic analysis of Alzheimer’s disease brain and cerebrospinal fluid reveals early changes in energy metabolism associated with microglia and astrocyte activation. Nat. Med. 26, 769– 780 (2020). 32284590 PMC7405761
  42. [49]C. H. Kim, S. S. Tworoger, M. J. Stampfer, S. T. Dillon, X. Gu, S. J. Sawyer, A. T. Chan, T. A. Libermann, A. H. Eliassen, Stability and reproducibility of proteomic profiles measured with an aptamer-based platform. Sci. Rep. 8, 8382 (2018). 29849057 PMC5976624
  43. [51]M. Pietzner, E. Wheeler, J. Carrasco-Zanini, N. D. Kerrison, E. Oerton, M. Koprulu, J. Luan, A. D. Hingorani, S. A. Williams, N. J. Wareham, C. Langenberg, Cross-platform proteomics to advance genetic prioritisation strategies. bioRxiv 2021.03.18.435919 [Preprint]. 19 March 2021; 10.1101/2021.03.18.435919. · DOI
  44. [52]A. M. Billing, H. B. Hamidane, A. M. Bhagwat, R. J. Cotton, S. S. Dib, P. Kumar, S. Hayat, N. Goswami, K. Suhre, A. Rafii, J. Graumann, Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells. J. Proteomics 150, 86– 97 (2017). 27613379
  45. [53]L. Ferrucci, The Baltimore Longitudinal Study of Aging (BLSA): A 50-year-long journey and plans for the future. J. Gerontol. A Biol. Sci. Med. Sci. 63, 1416– 1419 (2008). 19126858 PMC5004590
  46. [54]R. J. O’Brien, S. M. Resnick, A. B. Zonderman, L. Ferrucci, B. J. Crain, O. Pletnikova, G. Rudow, D. Iacono, M. A. Riudavets, I. Driscoll, D. L. Price, L. J. Martin, J. C. Troncoso, Neuropathologic studies of the Baltimore Longitudinal Study of Aging (BLSA). J. Alzheimers Dis. 18, 665– 675 (2009). 19661626 PMC2978421
  47. [56]J. C. Troncoso, A. B. Zonderman, S. M. Resnick, B. Crain, O. Pletnikova, R. J. O’Brien, Effect of infarcts on dementia in the Baltimore Longitudinal Study of Aging. Ann. Neurol. 64, 168– 176 (2008). 18496870 PMC2694129
  48. [57]C. Kawas, S. Gray, R. Brookmeyer, J. Fozard, A. Zonderman, Age-specific incidence rates of Alzheimer’s disease: The Baltimore Longitudinal Study of Aging. Neurology 54, 2072– 2077 (2000). 10851365
  49. [59]G. McKhann, D. Drachman, M. Folstein, R. Katzman, D. Price, E. M. Stadlan, Clinical diagnosis of Alzheimer’s disease: Report of the NINCDS-ADRDA Work Group under the auspices of Department of Health and Human Services Task Force on Alzheimer’s Disease. Neurology 34, 939– 944 (1984). 6610841
  50. [60]D. A. Bennett, A. S. Buchman, P. A. Boyle, L. L. Barnes, R. S. Wilson, J. A. Schneider, Religious orders study and rush memory and aging project. J. Alzheimers Dis. 64, S161– S189 (2018). 29865057 PMC6380522
  51. [61]J. A. Schneider, R. S. Wilson, E. J. Cochran, J. L. Bienias, S. E. Arnold, D. A. Evans, D. A. Bennett, Relation of cerebral infarctions to dementia and cognitive function in older persons. Neurology 60, 1082– 1088 (2003). 12682310
  52. [62]D. A. Bennett, R. S. Wilson, J. A. Schneider, D. A. Evans, N. T. Aggarwal, S. E. Arnold, E. J. Cochran, E. Berry-Kravis, J. L. Bienias, Apolipoprotein E epsilon4 allele, AD pathology, and the clinical expression of Alzheimer’s disease. Neurology 60, 246– 252 (2003). 12552039
  53. [63]Consensus recommendations for the postmortem diagnosis of Alzheimer’s disease. The National Institute on Aging, and Reagan Institute Working Group on Diagnostic Criteria for the Neuropathological Assessment of Alzheimer’s Disease. Neurobiol. Aging 18, S1– S2 (1997). 9330978
  54. [64]J. E. Hixson, D. T. Vernier, Restriction isotyping of human apolipoprotein E by gene amplification and cleavage with HhaI. J. Lipid Res. 31, 545– 548 (1990). 2341813
  55. [65]F. J. Huff, J. H. Growdon, S. Corkin, T. J. Rosen, Age at onset and rate of progression of Alzheimer’s disease. J. Am. Geriatr. Soc. 35, 27– 30 (1987). 3794143
  56. [66]J. Candia, F. Cheung, Y. Kotliarov, G. Fantoni, B. Sellers, T. Griesman, J. Huang, S. Stuccio, A. Zingone, B. M. Ryan, J. S. Tsang, A. Biancotto, Assessment of variability in the SOMAscan assay. Sci. Rep. 7, 14248 (2017). 29079756 PMC5660188
  57. [68]N. P. Hyslop, W. H. White, Estimating precision using duplicate measurements. J. Air Waste Manag. Assoc. 59, 1032– 1039 (2009). 19785269
  58. [69]J. M. Bland, D. G. Altman, Measurement error proportional to the mean. BMJ 313, 106 (1996). 8688716 PMC2351517
  59. [71]Y. An, V. R. Varma, S. Varma, R. Casanova, E. Dammer, O. Pletnikova, C. W. Chia, J. M. Egan, L. Ferrucci, J. Troncoso, A. I. Levey, J. Lah, N. T. Seyfried, C. Legido-Quigley, R. O’Brien Madhav Thambisetty, Evidence for brain glucose dysregulation in Alzheimer’s disease. Alzheimers Dement. 14, 318– 329 (2018). 29055815 PMC5866736
  60. [74]D. Szklarczyk, A. L. Gable, D. Lyon, A. Junge, S. Wyder, J. Huerta-Cepas, M. Simonovic, N. T. Doncheva, J. H. Morris, P. Bork, L. J. Jensen, C. von Mering, STRING v11: Protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 47, D607– D613 (2019). 30476243 PMC6323986
  61. [75]V. R. Varma, A. M. Oommen, S. Varma, R. Casanova, Y. An, R. M. Andrews, R. O’Brien, O. Pletnikova, J. C. Troncoso, J. Toledo, R. Baillie, M. Arnold, G. Kastenmueller, K. Nho, P. M. Doraiswamy, A. J. Saykin, R. Kaddurah-Daouk, C. Legido-Quigley, M. Thambisetty, Brain and blood metabolite signatures of pathology and progression in Alzheimer disease: A targeted metabolomics study. PLOS Med. 15, e1002482 (2018). 29370177 PMC5784884
  62. [76]J. A. Roberts, A. M. Oommen, S. Varma, R. Casanova, Y. An, R. M. Andrews, R. O’Brien, O. Pletnikova, J. C. Troncoso, J. Toledo, R. Baillie, M. Arnold, G. Kastenmueller, K. Nho, P. M. Doraiswamy, A. J. Saykin, R. Kaddurah-Daouk, C. Legido-Quigley, M. Thambisetty, Blood metabolite signature of metabolic syndrome implicates alterations in amino acid metabolism: Findings from the Baltimore Longitudinal Study of Aging (BLSA) and the Tsuruoka Metabolomics Cohort Study (TMCS). Int. J. Mol. Sci. 21, e1002482 (2020). PMC7072861 32070008
  63. [77]A. A. Sergushichev, An algorithm for fast preranked gene set enrichment analysis using cumulative statistic calculation. bioRxiv 060012 [Preprint]. 20 June 2016; 10.1101/060012. · DOI
  64. [78]E. M. Blalock, J. W. Geddes, K. C. Chen, N. M. Porter, W. R. Markesbery, P. W. Landfield, Incipient Alzheimer’s disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Proc. Natl. Acad. Sci. U.S.A. 101, 2173– 2178 (2004). 14769913 PMC357071
  65. [79]X. Zhu, L. Huang, Y. Zheng, Y. Song, Q. Xu, J. Wang, K. Si, S. Duan, W. Gong, Ultrafast optical clearing method for three-dimensional imaging with cellular resolution. Proc. Natl. Acad. Sci. U.S.A. 116, 11480– 11489 (2019). 31101714 PMC6561250
  66. [80]M. Wang, N. D. Beckmann, P. Roussos, E. Wang, X. Zhou, Q. Wang, C. Ming, R. Neff, W. Ma, J. F. Fullard, M. E. Hauberg, J. Bendl, M. A. Peters, B. Logsdon, P. Wang, M. Mahajan, L. M. Mangravite, E. B. Dammer, D. M. Duong, J. J. Lah, N. T. Seyfried, A. I. Levey, J. D. Buxbaum, M. Ehrlich, S. Gandy, P. Katsel, V. Haroutunian, E. Schadt, B. Zhang, The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer’s disease. Sci. Data 5, 180185 (2018). 30204156 PMC6132187
  67. [81]M. E. Ritchie, B. Phipson, D. Wu, Y. Hu, C. W. Law, W. Shi, G. K. Smyth, limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015). 25605792 PMC4402510
  68. [82]M. D. Robinson, A. Oshlack, A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11, R25 (2010). 20196867 PMC2864565
  69. [83]L. A. Farrer, L. A. Cupples, J. L. Haines, B. Hyman, W. A. Kukull, R. Mayeux, R. H. Myers, M. A. Pericak-Vance, N. Risch, C. M. van Duijn, Effects of age, sex, and ethnicity on the association between apolipoprotein E genotype and Alzheimer disease. A meta-analysis. APOE and Alzheimer Disease Meta Analysis Consortium. JAMA 278, 1349– 1356 (1997). 9343467
  70. [84]S. C. Neu, J. Pa, W. Kukull, D. Beekly, A. Kuzma, P. Gangadharan, L.-S. Wang, K. Romero, S. P. Arneric, A. Redolfi, D. Orlandi, G. B. Frisoni, R. Au, S. Devine, S. Auerbach, A. Espinosa, M. Boada, A. Ruiz, S. C. Johnson, R. Koscik, J.-J. Wang, W.-C. Hsu, Y.-L. Chen, A. W. Toga, Apolipoprotein E genotype and sex risk factors for Alzheimer disease: A meta-analysis. JAMA Neurol. 74, 1178– 1189 (2017). 28846757 PMC5759346
  71. [85]E. Genin, D. Hannequin, D. Wallon, K. Sleegers, M. Hiltunen, O. Combarros, M. J. Bullido, S. Engelborghs, P. De Deyn, C. Berr, F. Pasquier, B. Dubois, G. Tognoni, N. Fiévet, N. Brouwers, K. Bettens, B. Arosio, E. Coto, M. Del Zompo, I. Mateo, J. Epelbaum, A. Frank-Garcia, S. Helisalmi, E. Porcellini, A. Pilotto, P. Forti, R. Ferri, E. Scarpini, G. Siciliano, V. Solfrizzi, S. Sorbi, G. Spalletta, F. Valdivieso, S. Vepsäläinen, V. Alvarez, P. Bosco, M. Mancuso, F. Panza, B. Nacmias, P. Bossù, O. Hanon, P. Piccardi, G. Annoni, D. Seripa, D. Galimberti, F. Licastro, H. Soininen, J.-F. Dartigues, M. I. Kamboh, C. Van Broeckhoven, J. C. Lambert, P. Amouyel, D. Campion, APOE and Alzheimer disease: A major gene with semi-dominant inheritance. Mol. Psychiatry 16, 903– 907 (2011). 21556001 PMC3162068
  72. [86]S. B. Sando, S. Melquist, A. Cannon, M. L. Hutton, O. Sletvold, I. Saltvedt, L. R. White, S. Lydersen, J. O. Aasly, APOE epsilon 4 lowers age at onset and is a high risk factor for Alzheimer’s disease: A case control study from central Norway. BMC Neurol. 8, 9 (2008). 18416843 PMC2375917
  73. [87]E. H. Corder, A. M. Saunders, W. J. Strittmatter, D. E. Schmechel, P. C. Gaskell, G. W. Small, A. D. Roses, J. L. Haines, M. A. Pericak-Vanc, Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer’s disease in late onset families. Science 261, 921– 923 (1993). 8346443
  74. [88]W. J. Jansen, R. Ossenkoppele, D. L. Knol, B. M. Tijms, P. Scheltens, F. R. J. Verhey, P. J. Visser; Amyloid Biomarker Study Group, P. Aalten, D. Aarsland, D. Alcolea, M. Alexander, I. S. Almdahl, S. E. Arnold, I. Baldeiras, H. Barthel, B. N. M. van Berckel, K. Bibeau, K. Blennow, D. J. Brooks, M. A. van Buchem, V. Camus, E. Cavedo, K. Chen, G. Chetelat, A. D. Cohen, A. Drzezga, S. Engelborghs, A. M. Fagan, T. Fladby, A. S. Fleisher, W. M. van der Flier, L. Ford, S. Förster, J. Fortea, N. Foskett, K. S. Frederiksen, Y. Freund-Levi, G. B. Frisoni, L. Froelich, T. Gabryelewicz, K. D. Gill, O. Gkatzima, E. Gómez-Tortosa, M. F. Gordon, T. Grimmer, H. Hampel, L. Hausner, S. Hellwig, S.-K. Herukka, H. Hildebrandt, L. Ishihara, A. Ivanoiu, W. J. Jagust, P. Johannsen, R. Kandimalla, E. Kapaki, A. Klimkowicz-Mrowiec, W. E. Klunk, S. Köhler, N. Koglin, J. Kornhuber, M. G. Kramberger, K. Van Laere, S. M. Landau, D. Y. Lee, M. de Leon, V. Lisetti, A. Lleó, K. Madsen, W. Maier, J. Marcusson, N. Mattsson, A. de Mendonça, O. Meulenbroek, P. T. Meyer, M. A. Mintun, V. Mok, J. L. Molinuevo, H. M. Møllergård, J. C. Morris, B. Mroczko, S. Van der Mussele, D. L. Na, A. Newberg, A. Nordberg, A. Nordlund, G. P. Novak, G. P. Paraskevas, L. Parnetti, G. Perera, O. Peters, J. Popp, S. Prabhakar, G. D. Rabinovici, I. H. G. B. Ramakers, L. Rami, C. R. de Oliveira, J. O. Rinne, K. M. Rodrigue, E. Rodríguez-Rodríguez, C. M. Roe, U. Rot, C. C. Rowe, E. Rüther, O. Sabri, P. Sanchez-Juan, I. Santana, M. Sarazin, J. Schröder, C. Schütte, S. W. Seo, F. Soetewey, H. Soininen, L. Spiru, H. Struyfs, C. E. Teunissen, M. Tsolaki, R. Vandenberghe, M. M. Verbeek, V. L. Villemagne, S. J. B. Vos, L. J. C. van Waalwijk van Doorn, G. Waldemar, A. Wallin, Å. K. Wallin, J. Wiltfang, D. A. Wolk, M. Zboch, H. Zetterberg, Prevalence of cerebral amyloid pathology in persons without dementia: A meta-analysis. JAMA 313, 1924– 1938 (2015). 25988462 PMC4486209
  75. [89]O. Pletnikova, Y. Kageyama, G. Rudow, K. D. La Clair, M. Albert, B. J. Crain, J. Tian, D. Fowler, J. C. Troncoso, The spectrum of preclinical Alzheimer’s disease pathology and its modulation by ApoE genotype. Neurobiol. Aging 71, 72– 80 (2018). 30099348
  76. [90]E. M. Reiman, K. Chen, G. E. Alexander, R. J. Caselli, D. Bandy, D. Osborne, A. M. Saunders, J. Hardy, Functional brain abnormalities in young adults at genetic risk for late-onset Alzheimer’s dementia. Proc. Natl. Acad. Sci. U.S.A. 101, 284– 289 (2004). 14688411 PMC314177
  77. [91]P. Shaw, J. P. Lerch, J. C. Pruessner, K. N. Taylor, A. B. Rose, D. Greenstein, L. Clasen, A. Evans, J. L. Rapoport, J. N. Giedd, Cortical morphology in children and adolescents with different apolipoprotein E gene polymorphisms: An observational study. Lancet Neurol. 6, 494– 500 (2007). 17509484
  78. [92]J. Nao, H. Sun, Q. Wang, S. Ma, S. Zhang, X. Dong, Y. Ma, X. Wang, D. Zheng, Adverse effects of the apolipoprotein E ε4 allele on episodic memory, task switching and gray matter volume in healthy young adults. Front. Hum. Neurosci. 11, 346 (2017). 28706481 PMC5489690
  79. [93]M. Wang, Y. Zhao, B. Zhang, Efficient test and visualization of multi-set intersections. Sci. Rep. 5, 16923 (2015). 26603754 PMC4658477
  80. [94]S. Oddo, A. Caccamo, J. D. Shepherd, M. P. Murphy, T. E. Golde, R. Kayed, R. Metherate, M. P. Mattson, Y. Akbari, F. M. La Ferla, Triple-transgenic model of Alzheimer’s disease with plaques and tangles: Intracellular Aβ and synaptic dysfunction. Neuron 39, 409– 421 (2003). 12895417
  81. [95]Y. Kageyama, A. Saito, O. Pletnikova, G. L. Rudow, Y. Irie, Y. An, K. Murakami, K. Irie, S. M. Resnick, D. R. Fowler, L. J. Martin, J. C. Troncoso, Amyloid β toxic conformer has dynamic localization in the human inferior parietal cortex in absence of amyloid plaques. Sci. Rep. 8, 16895 (2018). 30442978 PMC6237870
  82. [96]S. S. Mirra, A. Heyman, D. M. Keel, S. M. Sumi, B. J. Crain, L. M. Brownlee, F. S. Vogel, J. P. Hughes, G. van Belle, L. Berg, The Consortium to Establish a Registry for Alzheimer’s Disease (CERAD). Part II. Standardization of the neuropathologic assessment of Alzheimer’s disease. Neurology 41, 479– 486 (1991). 2011243
  83. [97]B. Bai, X. Wang, Y. Li, P.-C. Chen, K. Yu, K. K. Dey, J. M. Yarbro, X. Han, B. M. Lutz, S. Rao, Y. Jiao, J. M. Sifford, J. Han, M. Wang, H. Tan, T. I. Shaw, J.-H. Cho, S. Zhou, H. Wang, M. Niu, A. Mancieri, K. A. Messler, X. Sun, Z. Wu, V. Pagala, A. A. High, W. Bi, H. Zhang, H. Chi, V. Haroutunian, B. Zhang, T. G. Beach, G. Yu, J. Peng, Deep multilayer brain proteomics identifies molecular networks in Alzheimer’s disease progression. Neuron 106, 700 (2020). 32437656 PMC7322979
  84. [98]H. Mathys, J. Davila-Velderrain, Z. Peng, F. Gao, S. Mohammadi, J. Z. Young, M. Menon, L. He, F. Abdurrob, X. Jiang, A. J. Martorell, R. M. Ransohoff, B. P. Hafler, D. A. Bennett, M. Kellis, L.-H. Tsai, Single-cell transcriptomic analysis of Alzheimer’s disease. Nature 570, 332– 337 (2019). 31042697 PMC6865822
  85. [99]H. Oakley, S. L. Cole, S. Logan, E. Maus, P. Shao, J. Craft, A. Guillozet-Bongaarts, M. Ohno, J. Disterhoft, L. Van Eldik, R. Berry, R. Vassar, Intraneuronal beta-amyloid aggregates, neurodegeneration, and neuron loss in transgenic mice with five familial Alzheimer’s disease mutations: Potential factors in amyloid plaque formation. J. Neurosci. 26, 10129– 10140 (2006). 17021169 PMC6674618
  86. [100]A. D’Angelo, N. Sobhani, R. Chapman, S. Bagby, C. Bortoletti, M. Traversini, K. Ferrari, L. Voltolini, J. Darlow, G. Roviello, Focus on ROS1-positive non-small cell lung cancer (NSCLC): Crizotinib, resistance mechanisms and the newer generation of targeted therapies. Cancers 12, 3293 (2020). 33172113 PMC7694780
  87. [101]FDA Grants, Orphan drug designation for napabucasin. Oncology Times 38, 25 (2016).
  88. [102]P. Rousselot, L. Mollica, J. Guilhot, A. Guerci, F. E. Nicolini, G. Etienne, L. Legros, A. Charbonnier, V. Coiteux, C. Dartigeas, M. Escoffre-Barbe, L. Roy, P. Cony-Makhoul, V. Dubruille, M. Gardembas, F. Huguet, D. Réa, E. Cayssials, F. Guilhot, A. Bergeron, M. Molimard, F.-X. Mahon, J.-M. Cayuela, L. Busque, S. Bouchet, Dasatinib dose optimisation based on therapeutic drug monitoring reduces pleural effusion rates in chronic myeloid leukaemia patients. Br. J. Haematol. 194, 393– 402 (2021). 34195988
  89. [103]M. Xiong, H. Jiang, J. R. Serrano, E. R. Gonzales, C. Wang, M. Gratuze, R. Hoyle, N. Bien-Ly, A. P. Silverman, P. M. Sullivan, R. J. Watts, J. D. Ulrich, G. J. Zipfel, D. M. Holtzman, APOE immunotherapy reduces cerebral amyloid angiopathy and amyloid plaques while improving cerebrovascular function. Sci. Transl. Med. 13, eabd7522 (2021). 33597265 PMC8128342
  90. [104]A. Schroeder, J. de Wit, Leucine-rich repeat-containing synaptic adhesion molecules as organizers of synaptic specificity and diversity. Exp. Mol. Med. 50, 10 (2018). 29628503 PMC5938020
  91. [105]S. Lincoln, M. Allen, C. L. Cox, L. P. Walker, K. Malphrus, Y. Qiu, T. Nguyen, C. Rowley, N. Kouri, J. Crook, V. S. Pankratz, S. Younkin, L. Younkin, M. Carrasquillo, F. Zou, S. O. Abdul-Hay, W. Springer, S. B. Sando, J. O. Aasly, M. Barcikowska, Z. K. Wszolek, J. M. Lewis, D. Dickson, N. R. Graff-Radford, R. C. Petersen, E. Eckman, S. G. Younkin, N. Ertekin-Taner, LRRTM3 interacts with APP and BACE1 and has variants associating with late-onset Alzheimer’s disease (LOAD). PLOS ONE 8, e64164 (2013). 23750206 PMC3672107
  92. [106]J. Majercak, W. J. Ray, A. Espeseth, A. Simon, X.-P. Shi, C. Wolffe, K. Getty, S. Marine, E. Stec, M. Ferrer, B. Strulovici, S. Bartz, A. Gates, M. Xu, Q. Huang, L. Ma, P. Shughrue, J. Burchard, D. Colussi, B. Pietrak, J. Kahana, D. Beher, T. Rosahl, M. Shearman, D. Hazuda, A. B. Sachs, K. S. Koblan, G. R. Seabrook, D. J. Stone, LRRTM3 promotes processing of amyloid-precursor protein by BACE1 and is a positional candidate gene for late-onset Alzheimer’s disease. Proc. Natl. Acad. Sci. U.S.A. 103, 17967– 17972 (2006). 17098871 PMC1635650
  93. [107]N. Y. Kim, M.-H. Cho, S.-H. Won, H.-J. Kang, S.-Y. Yoon, D.-H. Kim, Sorting nexin-4 regulates β-amyloid production by modulating β-site-activating cleavage enzyme-1. Alzheimers Res. Ther. 9, 4 (2017). 28109317 PMC5251330
  94. [108]W. H. Toh, P. Z. C. Chia, M. I. Hossain, P. A. Gleeson, GGA1 regulates signal-dependent sorting of BACE1 to recycling endosomes, which moderates Abeta production. Mol. Biol. Cell 29, 191– 208 (2018). 29142073 PMC5909931
  95. [109]L. Sánchez, V. Alvarez, P. González, I. González, R. Alvarez, E. Coto, Variation in the LRP-associated protein gene (LRPAP1) is associated with late-onset Alzheimer disease. Am. J. Med. Genet. 105, 76– 78 (2001). 11425005
  96. [110]E. Van Uden, M. Mallory, I. Veinbergs, M. Alford, E. Rockenstein, E. Masliah, Increased extracellular amyloid deposition and neurodegeneration in human amyloid precursor protein transgenic mice deficient in receptor-associated protein. J. Neurosci. 22, 9298– 9304 (2002). 12417655 PMC6758061
  97. [111]C. Reitz, C. Conrad, K. Roszkowski, R. S. Rogers, R. Mayeux, Effect of genetic variation in LRRTM3 on risk of Alzheimer disease. Arch. Neurol. 69, 894– 900 (2012). 22393166 PMC3391336
  98. [112]P. Pandey, S. Pradhan, B. Mittal, LRP-associated protein gene (LRPAP1) and susceptibility to degenerative dementia. Genes Brain Behav. 7, 943– 950 (2008). 18721259
  99. [113]E. Anguita, A. Villalobo, Src-family tyrosine kinases and the Ca(2+) signal. Biochim. Biophys. Acta Mol. Cell. Res. 1864, 915– 932 (2017). 27818271
  100. [114]W. Lucchesi, K. Mizuno, K. P. Giese, Novel insights into CaMKII function and regulation during memory formation. Brain Res. Bull. 85, 2– 8 (2011). 21070840
  101. [115]M. P. Sajan, B. C. Hansen, M. G. Higgs, C. R. Kahn, U. Braun, M. Leitges, C. R. Park, D. M. Diamond, R. V. Farese, Atypical PKC, PKCλ/ι, activates β-secretase and increases Aβ1-40/42 and phospho-tau in mouse brain and isolated neuronal cells, and may link hyperinsulinemia and other aPKC activators to development of pathological and memory abnormalities in Alzheimer’s disease. Neurobiol. Aging 61, 225– 237 (2018). 29032894 PMC5705272
  102. [116]A. Freund, C. K. Patil, J. Campisi, p38MAPK is a novel DNA damage response-independent regulator of the senescence-associated secretory phenotype. EMBO J. 30, 1536– 1548 (2011). 21399611 PMC3102277
  103. [117]A. Sun, M. Liu, X. V. Nguyen, G. Bing, P38 MAP kinase is activated at early stages in Alzheimer’s disease brain. Exp. Neurol. 183, 394– 405 (2003). 14552880
  104. [118]A. Briner, J. Gotz, J. C. Polanco, Fyn kinase controls tau aggregation in vivo. Cell Rep. 32, 108045 (2020). 32814048
  105. [119]A. Ghosh, K. P. Giese, Calcium/calmodulin-dependent kinase II and Alzheimer’s disease. Mol. Brain 8, 78 (2015). 26603284 PMC4657223
  106. [120]X. Hu, A. Addlagatta, J. Lu, B. W. Matthews, J. O. Liu, Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression. Proc. Natl. Acad. Sci. U.S.A. 103, 18148– 18153 (2006). 17114291 PMC1838721
  107. [121]J. Li, S. Hu, L. Zhou, L. Ye, X. Wang, J. Ho, W. Ho, Interferon lambda inhibits herpes simplex virus type I infection of human astrocytes and neurons. Glia 59, 58– 67 (2011). 20878770 PMC3082435
  108. [122]T. L. Thurston, M. P. Wandel, N. von Muhlinen, A. Foeglein, F. Randow, Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion. Nature 482, 414– 418 (2012). 22246324 PMC3343631
  109. [123]B. Falcon, J. Noad, H. McMahon, F. Randow, M. Goedert, Galectin-8-mediated selective autophagy protects against seeded tau aggregation. J. Biol. Chem. 293, 2438– 2451 (2018). 29282296 PMC5818177
  110. [124]S. Jiang, K. Bhaskar, Degradation and transmission of tau by autophagic-endolysosomal networks and potential therapeutic targets for tauopathy. Front. Mol. Neurosci. 13, 586731 (2020). 33177989 PMC7596180
  111. [125]H. Song, W. Kim, S. H. Kim, K. T. Kim, VRK3-mediated nuclear localization of HSP70 prevents glutamate excitotoxicity-induced apoptosis and Aβ accumulation via enhancement of ERK phosphatase VHR activity. Sci. Rep. 6, 38452 (2016). 27941812 PMC5150261
  112. [126]E. R. Tuminello, S. D. Han, The apolipoprotein e antagonistic pleiotropy hypothesis: Review and recommendations. Int. J. Alzheimers Dis. 2011, 726197 (2011). 21423560 PMC3056453
  113. [127]M. P. Vitek, C. M. Brown, C. A. Colton, APOE genotype-specific differences in the innate immune response. Neurobiol. Aging 30, 1350– 1360 (2009). 18155324 PMC2782461
  114. [128]S. Corbett, A. Courtiol, V. Lummaa, J. Moorad, S. Stearns, The transition to modernity and chronic disease: Mismatch and natural selection. Nat. Rev. Genet. 19, 419– 430 (2018). 29743650
  115. [129]B. C. Trumble, J. Stieglitz, A. D. Blackwell, H. Allayee, B. Beheim, C. E. Finch, M. Gurven, H. Kaplan, Apolipoprotein E4 is associated with improved cognitive function in Amazonian forager-horticulturalists with a high parasite burden. FASEB J. 31, 1508– 1515 (2017). 28031319 PMC5349792
  116. [130]E. C. B. Johnson, E. B. Dammer, D. M. Duong, L. Ping, M. Zhou, L. Yin, L. A. Higginbotham, A. Guajardo, B. White, J. C. Troncoso, M. Thambisetty, T. J. Montine, E. B. Lee, J. Q. Trojanowski, T. G. Beach, E. M. Reiman, V. Haroutunian, M. Wang, E. Schadt, B. Zhang, D. W. Dickson, N. Ertekin-Taner, T. E. Golde, V. A. Petyuk, P. L. De Jager, D. A. Bennett, T. S. Wingo, S. Rangaraju, I. Hajjar, J. M. Shulman, J. J. Lah, A. I. Levey, N. T. Seyfried, Large-scale proteomic analysis of Alzheimer’s disease brain and cerebrospinal fluid reveals early changes in energy metabolism associated with microglia and astrocyte activation. Nat. Med. 26, 769– 780 (2020). 32284590 PMC7405761
  117. [131]C. H. Kim, S. S. Tworoger, M. J. Stampfer, S. T. Dillon, X. Gu, S. J. Sawyer, A. T. Chan, T. A. Libermann, A. H. Eliassen, Stability and reproducibility of proteomic profiles measured with an aptamer-based platform. Sci. Rep. 8, 8382 (2018). 29849057 PMC5976624
  118. [132]S. Oveisgharan, Z. Arvanitakis, L. Yu, J. Farfel, J. A. Schneider, D. A. Bennett, Sex differences in Alzheimer’s disease and common neuropathologies of aging. Acta Neuropathol. 136, 887– 900 (2018). 30334074 PMC6279593
  119. [133]M. Pietzner, E. Wheeler, J. Carrasco-Zanini, N. D. Kerrison, E. Oerton, M. Koprulu, J. Luan, A. D. Hingorani, S. A. Williams, N. J. Wareham, C. Langenberg, Cross-platform proteomics to advance genetic prioritisation strategies. bioRxiv 2021.03.18.435919 [Preprint]. 19 March 2021; 10.1101/2021.03.18.435919. · DOI
  120. [134]A. M. Billing, H. B. Hamidane, A. M. Bhagwat, R. J. Cotton, S. S. Dib, P. Kumar, S. Hayat, N. Goswami, K. Suhre, A. Rafii, J. Graumann, Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells. J. Proteomics 150, 86– 97 (2017). 27613379
  121. [135]L. Ferrucci, The Baltimore Longitudinal Study of Aging (BLSA): A 50-year-long journey and plans for the future. J. Gerontol. A Biol. Sci. Med. Sci. 63, 1416– 1419 (2008). 19126858 PMC5004590
  122. [136]R. J. O’Brien, S. M. Resnick, A. B. Zonderman, L. Ferrucci, B. J. Crain, O. Pletnikova, G. Rudow, D. Iacono, M. A. Riudavets, I. Driscoll, D. L. Price, L. J. Martin, J. C. Troncoso, Neuropathologic studies of the Baltimore Longitudinal Study of Aging (BLSA). J. Alzheimers Dis. 18, 665– 675 (2009). 19661626 PMC2978421
  123. [137]H. Braak, E. Braak, Neuropathological stageing of Alzheimer-related changes. Acta Neuropathol. 82, 239– 259 (1991). 1759558
  124. [138]J. C. Troncoso, A. B. Zonderman, S. M. Resnick, B. Crain, O. Pletnikova, R. J. O’Brien, Effect of infarcts on dementia in the Baltimore longitudinal study of aging. Ann. Neurol. 64, 168– 176 (2008). 18496870 PMC2694129
  125. [139]C. Kawas, S. Gray, R. Brookmeyer, J. Fozard, A. Zonderman, Age-specific incidence rates of Alzheimer’s disease: The Baltimore Longitudinal Study of Aging. Neurology 54, 2072– 2077 (2000). 10851365
  126. [141]G. McKhann, D. Drachman, M. Folstein, R. Katzman, D. Price, E. M. Stadlan, Clinical diagnosis of Alzheimer’s disease: Report of the NINCDS-ADRDA Work Group under the auspices of Department of Health and Human Services Task Force on Alzheimer’s disease. Neurology 34, 939– 944 (1984). 6610841
  127. [142]D. A. Bennett, A. S. Buchman, P. A. Boyle, L. L. Barnes, R. S. Wilson, J. A. Schneider, Religious orders study and rush memory and aging project. J. Alzheimers Dis. 64, S161– S189 (2018). 29865057 PMC6380522
  128. [143]J. A. Schneider, R. S. Wilson, E. J. Cochran, J. L. Bienias, S. E. Arnold, D. A. Evans, D. A. Bennett, Relation of cerebral infarctions to dementia and cognitive function in older persons. Neurology 60, 1082– 1088 (2003). 12682310
  129. [145]Consensus recommendations for the postmortem diagnosis of Alzheimer’s disease. The National Institute on Aging, and Reagan Institute Working Group on Diagnostic Criteria for the Neuropathological Assessment of Alzheimer’s disease. Neurobiology Aging 18, S1– S2 (1997). 9330978
  130. [146]J. E. Hixson, D. T. Vernier, Restriction isotyping of human apolipoprotein E by gene amplification and cleavage with HhaI. J. Lipid Res. 31, 545– 548 (1990). 2341813
  131. [147]F. J. Huff, J. H. Growdon, S. Corkin, T. J. Rosen, Age at onset and rate of progression of Alzheimer’s disease. J. Am. Geriatr. Soc. 35, 27– 30 (1987). 3794143
  132. [148]J. Candia, F. Cheung, Y. Kotliarov, G. Fantoni, B. Sellers, T. Griesman, J. Huang, S. Stuccio, A. Zingone, B. M. Ryan, J. S. Tsang, A. Biancotto, Assessment of variability in the SOMAscan assay. Sci. Rep. 7, 14248 (2017). 29079756 PMC5660188
  133. [149]L. Gold, D. Ayers, J. Bertino, C. Bock, A. Bock, E. N. Brody, J. Carter, A. B. Dalby, B. E. Eaton, T. Fitzwater, D. Flather, A. Forbes, T. Foreman, C. Fowler, B. Gawande, M. Goss, M. Gunn, S. Gupta, D. Halladay, J. Heil, J. Heilig, B. Hicke, G. Husar, N. Janjic, T. Jarvis, S. Jennings, E. Katilius, T. R. Keeney, N. Kim, T. H. Koch, S. Kraemer, L. Kroiss, N. Le, D. Levine, W. Lindsey, B. Lollo, W. Mayfield, M. Mehan, R. Mehler, S. K. Nelson, M. Nelson, D. Nieuwlandt, M. Nikrad, U. Ochsner, R. M. Ostroff, M. Otis, T. Parker, S. Pietrasiewicz, D. I. Resnicow, J. Rohloff, G. Sanders, S. Sattin, D. Schneider, B. Singer, M. Stanton, A. Sterkel, A. Stewart, S. Stratford, J. D. Vaught, M. Vrkljan, J. J. Walker, M. Watrobka, S. Waugh, A. Weiss, S. K. Wilcox, A. Wolfson, S. K. Wolk, C. Zhang, D. Zichi, Aptamer-based multiplexed proteomic technology for biomarker discovery. PLOS ONE 5, e15004 (2010). 21165148 PMC3000457
  134. [150]N. P. Hyslop, W. H. White, Estimating precision using duplicate measurements. J. Air Waste Manag. Assoc. 59, 1032– 1039 (2009). 19785269
  135. [151]J. M. Bland, D. G. Altman, Measurement error proportional to the mean. BMJ 313, 106 (1996). 8688716 PMC2351517
  136. [153]Y. An, V. R. Varma, S. Varma, R. Casanova, E. Dammer, O. Pletnikova, C. W. Chia, J. M. Egan, L. Ferrucci, J. Troncoso, A. I. Levey, J. Lah, N. T. Seyfried, C. Legido-Quigley, R. O’Brien Madhav Thambisetty, Evidence for brain glucose dysregulation in Alzheimer’s disease. Alzheimers Dement. 14, 318– 329 (2018). 29055815 PMC5866736
  137. [155]A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee, B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy, T. R. Golub, E. S. Lander, J. P. Mesirov, Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. U.S.A. 102, 15545– 15550 (2005). 16199517 PMC1239896
  138. [156]D. Szklarczyk, A. L. Gable, D. Lyon, A. Junge, S. Wyder, J. Huerta-Cepas, M. Simonovic, N. T. Doncheva, J. H. Morris, P. Bork, L. J. Jensen, C. von Mering, STRING v11: Protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 47, D607– D613 (2019). 30476243 PMC6323986
  139. [157]V. R. Varma, A. M. Oommen, S. Varma, R. Casanova, Y. An, R. M. Andrews, R. O’Brien, O. Pletnikova, J. C. Troncoso, J. Toledo, R. Baillie, M. Arnold, G. Kastenmueller, K. Nho, P. M. Doraiswamy, A. J. Saykin, R. Kaddurah-Daouk, C. Legido-Quigley, M. Thambisetty, Brain and blood metabolite signatures of pathology and progression in Alzheimer disease: A targeted metabolomics study. PLOS Med. 15, e1002482 (2018). 29370177 PMC5784884
  140. [158]J. A. Roberts, A. M. Oommen, S. Varma, R. Casanova, Y. An, R. M. Andrews, R. O’Brien, O. Pletnikova, J. C. Troncoso, J. Toledo, R. Baillie, M. Arnold, G. Kastenmueller, K. Nho, P. M. Doraiswamy, A. J. Saykin, R. Kaddurah-Daouk, C. Legido-Quigley, M. Thambisetty, Blood metabolite signature of metabolic syndrome implicates alterations in amino acid metabolism: Findings from the Baltimore Longitudinal Study of Aging (BLSA) and the Tsuruoka Metabolomics Cohort Study (TMCS). Int. J. Mol. Sci. 21, e1002482 (2020). PMC7072861 32070008
  141. [159]A. A. Sergushichev, An algorithm for fast preranked gene set enrichment analysis using cumulative statistic calculation. bioRxiv 060012 [Preprint]. 20 June 2016; 10.1101/060012. · DOI
  142. [160]E. M. Blalock, J. W. Geddes, K. C. Chen, N. M. Porter, W. R. Markesbery, P. W. Landfield, Incipient Alzheimer’s disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Proc. Natl. Acad. Sci. U.S.A. 101, 2173– 2178 (2004). 14769913 PMC357071
  143. [161]X. Zhu, L. Huang, Y. Zheng, Y. Song, Q. Xu, J. Wang, K. Si, S. Duan, W. Gong, Ultrafast optical clearing method for three-dimensional imaging with cellular resolution. Proc. Natl. Acad. Sci. U.S.A. 116, 11480– 11489 (2019). 31101714 PMC6561250
  144. [162]M. Wang, N. D. Beckmann, P. Roussos, E. Wang, X. Zhou, Q. Wang, C. Ming, R. Neff, W. Ma, J. F. Fullard, M. E. Hauberg, J. Bendl, M. A. Peters, B. Logsdon, P. Wang, M. Mahajan, L. M. Mangravite, E. B. Dammer, D. M. Duong, J. J. Lah, N. T. Seyfried, A. I. Levey, J. D. Buxbaum, M. Ehrlich, S. Gandy, P. Katsel, V. Haroutunian, E. Schadt, B. Zhang, The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer’s disease. Sci. Data 5, 180185 (2018). 30204156 PMC6132187
  145. [163]M. E. Ritchie, B. Phipson, D. Wu, Y. Hu, C. W. Law, W. Shi, G. K. Smyth, limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015). 25605792 PMC4402510
  146. [164]M. D. Robinson, A. Oshlack, A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11, R25 (2010). 20196867 PMC2864565
  147. [165]S. Gabbouj, T. Natunen, H. Koivisto, K. Jokivarsi, M. Takalo, M. Marttinen, R. Wittrahm, S. Kemppainen, R. Naderi, A. Posado-Fernández, S. Ryhänen, P. Mäkinen, K. M. A. Paldanius, G. Doria, P. Poutiainen, O. Flores, A. Haapasalo, H. Tanila, M. Hiltunen, Intranasal insulin activates Akt2 signaling pathway in the hippocampus of wild-type but not in APP/PS1 Alzheimer model mice. Neurobiol. Aging 75, 98– 108 (2019). 30554086
  148. [166]F. Su, H. Shu, Q. Ye, Z. Wang, C. Xie, B. Yuan, Z. Zhang, F. Bai, Brain insulin resistance deteriorates cognition by altering the topological features of brain networks. Neuroimage Clin. 13, 280– 287 (2017). 28050343 PMC5192246
  149. [168]S. Awad, K. M. A. Al-Haffar, Q. Marashly, P. Quijada, M. Kunhi, N. Al-Yacoub, F. S. Wade, S. F. Mohammed, F. Al-Dayel, G. Sutherland, A. Assiri, M. Sussman, D. Bers, W. Al-Habeeb, C. Poizat, Control of histone H3 phosphorylation by CaMKIIδ in response to haemodynamic cardiac stress. J. Pathol. 235, 606– 618 (2015). 25421395 PMC4383650
  150. [170]S. E. Tan, K. C. Liang, Spatial learning alters hippocampal calcium/calmodulin-dependent protein kinase II activity in rats. Brain Res. 711, 234– 240 (1996). 8680867
  151. [171]T. Akita, K. Aoto, M. Kato, M. Shiina, H. Mutoh, M. Nakashima, I. Kuki, S. Okazaki, S. Magara, T. Shiihara, K. Yokochi, K. Aiba, J. Tohyama, C. Ohba, S. Miyatake, N. Miyake, K. Ogata, A. Fukuda, N. Matsumoto, H. Saitsu, De novo variants in CAMK2A and CAMK2B cause neurodevelopmental disorders. Ann. Clin. Transl. Neurol. 5, 280– 296 (2018). 29560374 PMC5846454
  152. [173]N. Federman, V. de la Fuente, G. Zalcman, N. Corbi, A. Onori, C. Passananti, A. Romano, Nuclear factorκB-dependent histone acetylation is specifically involved in persistent forms of memory. J. Neurosci. 33, 7603– 7614 (2013). 23616565 PMC6619586
  153. [174]G. Zalcman, N. Federman, A. Romano, CaMKII isoforms in learning and memory: Localization and function. Front. Mol. Neurosci. 11, 445 (2018). 30564099 PMC6288437
  154. [175]W. Xuan, Q. Qu, B. Zheng, S. Xiong, G. H. Fan, The chemotaxis of M1 and M2 macrophages is regulated by different chemokines. J. Leukoc. Biol. 97, 61– 69 (2015). 25359998
  155. [176]Y. Yan, R. Chen, X. Wang, K. Hu, L. Huang, M. Lu, Q. Hu, CCL19 and CCR7 expression, signaling pathways, and adjuvant functions in viral infection and prevention. Front. Cell Dev. Biol. 7, 212 (2019). 31632965 PMC6781769
  156. [177]R. Raju, S. Gadakh, P. Gopal, B. George, J. Advani, S. Soman, T. S. K. Prasad, R. Girijadevi, Differential ligand-signaling network of CCL19/CCL21-CCR7 system. Database 2015, bav106 (2015). 26504105 PMC4620938
  157. [178]C. Otero, P. S. Eisele, K. Schaeuble, M. Groettrup, D. F. Legler, Distinct motifs in the chemokine receptor CCR7 regulate signal transduction, receptor trafficking and chemotaxis. J. Cell Sci. 121, 2759– 2767 (2008). 18664492
  158. [179]A. Le Page, K. Bourgade, J. Lamoureux, E. Frost, G. Pawelec, A. Larbi, J. M. Witkowski, G. Dupuis, T. Fülöp, NK cells are activated in amnestic mild cognitive impairment but not in mild Alzheimer’s disease patients. J. Alzheimers Dis. 46, 93– 107 (2015). 25720398
  159. [180]Y. Ber, R. Shiloh, Y. Gilad, N. Degani, S. Bialik, A. Kimchi, DAPK2 is a novel regulator of mTORC1 activity and autophagy. Cell Death Differ. 22, 465– 475 (2015). 25361081 PMC4326577
  160. [181]B. Geering, C. Stoeckle, S. Rozman, K. Oberson, C. Benarafa, H.-U. Simon, DAPK2 positively regulates motility of neutrophils and eosinophils in response to intermediary chemoattractants. J. Leukoc. Biol. 95, 293– 303 (2014). 24163421
  161. [182]N. Kim, D. Chen, X. Z. Zhou, T. H. Lee, Death-associated protein kinase 1 phosphorylation in neuronal cell death and neurodegenerative disease. Int. J. Mol. Sci. 20, 3131 (2019). 31248062 PMC6651373
  162. [184]S. Rahmouni, F. Cerignoli, A. Alonso, T. Tsutji, R. Henkens, C. Zhu, C. Louis-dit-Sully, M. Moutschen, W. Jiang, T. Mustelin, Loss of the VHR dual-specific phosphatase causes cell-cycle arrest and senescence. Nat. Cell Biol. 8, 524– 531 (2006). 16604064
  163. [185]M. Amand, C. Erpicum, K. Bajou, F. Cerignoli, S. Blacher, M. Martin, F. Dequiedt, P. Drion, P. Singh, T. Zurashvili, M. Vandereyken, L. Musumeci, T. Mustelin, M. Moutschen, C. Gilles, A. Noel, S. Rahmouni, DUSP3/VHR is a pro-angiogenic atypical dual-specificity phosphatase. Mol. Cancer 13, 108 (2014). 24886454 PMC4038117
  164. [186]S. H. Kim, J. A. Markham, I. J. Weiler, W. T. Greenough, Aberrant early-phase ERK inactivation impedes neuronal function in fragile X syndrome. Proc. Natl. Acad. Sci. U.S.A. 105, 4429– 4434 (2008). 18332424 PMC2393788
  165. [187]X. Liu, H. Zuo, D. Wang, R. Peng, T. Song, S. Wang, X. Xu, Y. Gao, Y. Li, S. Wang, L. Wang, L. Zhao, Improvement of spatial memory disorder and hippocampal damage by exposure to electromagnetic fields in an Alzheimer’s disease rat model. PLOS ONE 10, e0126963 (2015). 25978363 PMC4433192
  166. [188]L. Musumeci, M. J. Kuijpers, K. Gilio, A. Hego, E. Théâtre, L. Maurissen, M. Vandereyken, C. V. Diogo, C. Lecut, W. Guilmain, E. V. Bobkova, J. A. Eble, R. Dahl, P. Drion, J. Rascon, Y. Mostofi, H. Yuan, E. Sergienko, T. D. Y. Chung, M. Thiry, Y. Senis, M. Moutschen, T. Mustelin, P. Lancellotti, J. W. M. Heemskerk, L. Tautz, C. Oury, S. Rahmouni, Dual-specificity phosphatase 3 deficiency or inhibition limits platelet activation and arterial thrombosis. Circulation 131, 656– 668 (2015). 25520375 PMC4334727
  167. [189]K. L. West, J. L. Kelliher, Z. Xu, L. An, M. R. Reed, R. L. Eoff, J. Wang, M. S. Y. Huen, J. W. C. Leung, LC8/DYNLL1 is a 53BP1 effector and regulates checkpoint activation. Nucleic Acids Res. 47, 6236– 6249 (2019). 30982887 PMC6614850
  168. [190]L. Hannibal, Nitric oxide homeostasis in neurodegenerative diseases. Curr. Alzheimer Res. 13, 135– 149 (2016). 26391043
  169. [191]S. B. Mkaddem, A. Murua, H. Flament, D. Titeca-Beauport, C. Bounaix, L. Danelli, P. Launay, M. Benhamou, U. Blank, E. Daugas, N. Charles, R. C. Monteiro, Lyn and Fyn function as molecular switches that control immunoreceptors to direct homeostasis or inflammation. Nat. Commun. 8, 246 (2017). 28811476 PMC5557797
  170. [192]H. B. Nygaard, Targeting Fyn kinase in Alzheimer’s disease. Biol. Psychiatry 83, 369– 376 (2018). 28709498 PMC5729051
  171. [193]A. C. Kaufman, S. V. Salazar, L. T. Haas, J. Yang, M. A. Kostylev, A. T. Jeng, S. A. Robinson, E. C. Gunther, C. H. van Dyck, H. B. Nygaard, S. M. Strittmatter, Fyn inhibition rescues established memory and synapse loss in Alzheimer mice. Ann. Neurol. 77, 953– 971 (2015). 25707991 PMC4447598
  172. [194]C. Li, J. Gotz, Somatodendritic accumulation of Tau in Alzheimer’s disease is promoted by Fyn-mediated local protein translation. EMBO J. 36, 3120– 3138 (2017). 28864542 PMC5666608
  173. [195]K. Blais, J. Sethi, I. V. Tabarean, Gastrin-releasing peptide receptor mediates the excitation of preoptic GABAergic neurons by bombesin. Neurosci. Lett. 633, 262– 267 (2016). 27693662 PMC5074900
  174. [196]E. Ito, K. Oka, R. Etcheberrigaray, T. J. Nelson, D. L. M. Phie, B. Tofel-Grehl, G. E. Gibson, D. L. Alkon, Internal Ca2+ mobilization is altered in fibroblasts from patients with Alzheimer disease. Proc. Natl. Acad. Sci. U.S.A. 91, 534– 538 (1994). 8290560 PMC42983
  175. [197]T. W. Moody, C. B. Pert, J. Rivier, M. R. Brown, Bomebesin: Specific binding to rat brain membranes. Proc. Natl. Acad. Sci. U.S.A. 75, 5372– 5376 (1978). 281686 PMC392965
  176. [198]A. Ayer, A. Zarjou, A. Agarwal, R. Stocker, Heme oxygenases in cardiovascular health and disease. Physiol. Rev. 96, 1449– 1508 (2016). 27604527 PMC5504454
  177. [199]S. Xing, D. Shen, C. Chen, J. Wang, Z. Yu, Early induction of oxidative stress in a mouse model of Alzheimer’s disease with heme oxygenase activity. Mol. Med. Rep. 10, 599– 604 (2014). 24858858 PMC4094768
  178. [200]C. Vidal, K. Daescu, K. E. Fitzgerald, A. Starokadomska, I. Bezprozvanny, L. Zhang, Amyloid β perturbs elevated heme flux induced with neuronal development. Alzheimers Dement. 5, 27– 37 (2019). PMC6352316 30723777
  179. [201]V. Calabrese, R. Sultana, G. Scapagnini, E. Guagliano, M. Sapienza, R. Bella, J. Kanski, G. Pennisi, C. Mancuso, A. M. G. Stella, D. A. Butterfield, Nitrosative stress, cellular stress response, and thiol homeostasis in patients with Alzheimer’s disease. Antioxid. Redox Signal. 8, 1975– 1986 (2006). 17034343
  180. [202]E. Chiziane, H. Telemann, M. Krueger, J. Adler, J. Arnhold, A. Alia, J. Flemmig, Free Heme and Amyloid-β: A fatal liaison in Alzheimer’s disease. J. Alzheimers Dis. 61, 963– 984 (2018). 29332049
  181. [203]H. Atamna, W. H. Frey II, A role for heme in Alzheimer’s disease: Heme binds amyloid beta and has altered metabolism. Proc. Natl. Acad. Sci. U.S.A. 101, 11153– 11158 (2004). 15263070 PMC503755
  182. [204]A. Egli, D. M. Santer, D. O’Shea, D. L. Tyrrell, M. Houghton, The impact of the interferon-lambda family on the innate and adaptive immune response to viral infections. Emerg. Microbes Infect. 3, e51 (2014). 26038748 PMC4126180
  183. [205]A. L. Nishimura, V. Zupunski, C. Troakes, C. Kathe, P. Fratta, M. Howell, J.-M. Gallo, T. Hortobágyi, C. E. Shaw, B. Rogelj, Nuclear import impairment causes cytoplasmic trans-activation response DNA-binding protein accumulation and is associated with frontotemporal lobar degeneration. Brain 133, 1763– 1771 (2010). 20472655
  184. [206]J. Jia, Y. P. Abudu, A. Claude-Taupin, Y. Gu, S. Kumar, S. W. Choi, R. Peters, M. H. Mudd, L. Allers, M. Salemi, B. Phinney, T. Johansen, V. Deretic, Galectins control mTOR in response to endomembrane damage. Mol. Cell 70, 120– 135.e8 (2018). 29625033 PMC5911935
  185. [207]S. Oddo, The role of mTOR signaling in Alzheimer disease. Front. Biosci. (Schol. Ed.) 4, 941– 952 (2012). 22202101 PMC4111148
  186. [208]A. Boza-Serrano, R. Ruiz, R. Sanchez-Varo, J. García-Revilla, Y. Yang, I. Jimenez-Ferrer, A. Paulus, M. Wennström, A. Vilalta, D. Allendorf, J. C. Davila, J. Stegmayr, S. Jiménez, M. A. Roca-Ceballos, V. Navarro-Garrido, M. Swanberg, C. L. Hsieh, L. M. Real, E. Englund, S. Linse, H. Leffler, U. J. Nilsson, G. C. Brown, A. Gutierrez, J. Vitorica, J. L. Venero, T. Deierborg, Galectin-3, a novel endogenous TREM2 ligand, detrimentally regulates inflammatory response in Alzheimer’s disease. Acta Neuropathol. 138, 251– 273 (2019). 31006066 PMC6660511
  187. [209]X. Wang, Y. Niu, C. X. Yue, S. Fu, R. T. Wang, Increased ileal bile acid binding protein and galectin-9 are associated with mild cognitive impairment and Alzheimer’s disease. J. Psychiatr. Res. 119, 102– 106 (2019). 31593867
  188. [210]J. W. Um, T.-Y. Choi, H. Kang, Y. S. Cho, G. Choii, P. Uvarov, D. Park, D. Jeong, S. Jeon, D. Lee, H. Kim, S.-H. Lee, Y.-C. Bae, S.-Y. Choi, M. S. Airaksinen, J. Ko, LRRTM3 regulates excitatory synapse development through alternative splicing and neurexin binding. Cell Rep. 14, 808– 822 (2016). 26776509
  189. [211]L. Schnoder, W. Hao, Y. Qin, S. Liu, I. Tomic, X. Liu, K. Fassbender, Y. Liu, Deficiency of neuronal p38alpha MAPK attenuates amyloid pathology in Alzheimer disease mouse and cell models through facilitating lysosomal degradation of BACE1. J. Biol. Chem. 291, 2067– 2079 (2016). 26663083 PMC4732195
  190. [212]T. K. Khan, D. L. Alkon, An internally controlled peripheral biomarker for Alzheimer’s disease: Erk1 and Erk2 responses to the inflammatory signal bradykinin. Proc. Natl. Acad. Sci. U.S.A. 103, 13203– 13207 (2006). 16920798 PMC1559777
  191. [213]F. Frottin, W. V. Bienvenut, J. Bignon, E. Jacquet, A. S. V. Jacome, A. Van Dorsselaer, S. Cianferani, C. Carapito, T. Meinnel, C. Giglione, MetAP1 and MetAP2 drive cell selectivity for a potent anti-cancer agent in synergy, by controlling glutathione redox state. Oncotarget 7, 63306– 63323 (2016). 27542228 PMC5325365
  192. [214]Y. Zhang, G. Yu, H. Chu, X. Wang, L. Xiong, G. Cai, R. Liu, H. Gao, B. Tao, W. Li, G. Li, J. Liang, W. Yang, Macrophage-associated PGK1 phosphorylation promotes aerobic glycolysis and tumorigenesis. Mol. Cell 71, 201– 215.e7 (2018). 30029001
  193. [215]M. Pietri, C. Dakowski, S. Hannaoui, A. Alleaume-Butaux, J. Hernandez-Rapp, A. Ragagnin, S. Mouillet-Richard, S. Haik, Y. Bailly, J.-M. Peyrin, J.-M. Launay, O. Kellermann, B. Schneider, PDK1 decreases TACE-mediated alpha-secretase activity and promotes disease progression in prion and Alzheimer’s diseases. Nat. Med. 19, 1124– 1131 (2013). 23955714
  194. [216]L. Manterola, M. Hernando-Rodríguez, A. Ruiz, A. Apraiz, O. Arrizabalaga, L. Vellón, E. Alberdi, F. Cavaliere, H. M. Lacerda, S. Jimenez, L. A. Parada, C. Matute, J. L. Zugaza, 1-42 β-amyloid peptide requires PDK1/nPKC/Rac 1 pathway to induce neuronal death. Transl. Psychiatry 3, e219 (2013). 23340502 PMC3566727
  195. [217]A. Antonell, A. Lladó, R. Sánchez-Valle, C. Sanfeliu, T. Casserras, L. Rami, C. Muñoz-García, A. Dangla-Valls, M. Balasa, P. Boya, S. G. Kalko, J. L. Molinuevo, Altered blood gene expression of tumor-related genes (PRKCB, BECN1, and CDKN2A) in Alzheimer’s disease. Mol. Neurobiol. 53, 5902– 5911 (2016). 26510741
  196. [218]A. Gerschütz, H. Heinsen, E. Grünblatt, A. K. Wagner, J. Bartl, C. Meissner, A. J. Fallgatter, S. Al-Sarraj, C. Troakes, I. Ferrer, T. Arzberger, J. Deckert, P. Riederer, M. Fischer, T. Tatschner, C. M. Monoranu, Neuron-specific alterations in signal transduction pathways associated with Alzheimer’s disease. J. Alzheimers Dis. 40, 135– 142 (2014). 24334724
  197. [219]J. Xie, Q. Guo, H. Zhu, M. W. Wooten, M. P. Mattson, Protein kinase C iota protects neural cells against apoptosis induced by amyloid β-peptide. Brain Res. Mol. Brain Res. 82, 107– 113 (2000). 11042363
  198. [220]L. Qu, G. Li, D. Xia, B. Hongdu, C. Xu, X. Lin, Y. Chen, PRKCI negatively regulates autophagy via PIK3CA/AKT-MTOR signaling. Biochem. Biophys. Res. Commun. 470, 306– 312 (2016). 26792725
  199. [221]S. S. Skanland, S. Walchli, A. Brech, K. Sandvig, SNX4 in complex with clathrin and dynein: Implications for endosome movement. PLOS ONE 4, e5935 (2009). 19529763 PMC2691479
  200. [222]T. Chiba, M. Yamada, S. Aiso, Targeting the JAK2/STAT3 axis in Alzheimer’s disease. Expert Opin. Ther. Targets 13, 1155– 1167 (2009). 19663649

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Authors
Roberts, J. A., Varma, V. R., An, Y., Varma, S., Candia, J., Fantoni, G., Tiwari, V., Anerillas, C., Williamson, A., Saito, A., Loeffler, T., Schilcher, I., Moaddel, R., Khadeer, M., Lovett, J., Tanaka, T., Pletnikova, O., Troncoso, J. C., Bennett, D. A., Albert, M. S., Yu, K., Niu, M., Haroutunian, V., Zhang, B., Peng, J., Croteau, D. L., Resnick, S. M., Gorospe, M., Bohr, V. A., Ferrucci, L., & Thambisetty, M.
Affiliations
  • National Institutes of Health (US)
  • HiThru Analytics, Laurel, MD 20707, USA.
  • Johns Hopkins University (US)
  • QPS (Austria) (AT)
  • Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
  • Rush University Medical Center (US)
  • St. Jude Children's Research Hospital (US)
  • James J. Peters VA Medical Center (US)
  • Icahn School of Medicine at Mount Sinai (US)
Corresponding author
Thambisetty, Madhav
Venue
Science Advances
Published
2021-11-12
Volume
7
Issue
46
Pages
eabi8178-eabi8178
ISSN
2375-2548 (ISSN-L)
OpenAlex
W3214018797
Cited by
49
References
20
Citations by year
2026: 8 · 2025: 8 · 2024: 14 · 2023: 7 · 2022: 12
FWCI
5.05
Type
journal article
Language
en
Open access
Locations
  • Science Advances (publishedVersion)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
Funders
National Institute on Aging (U01AG046170, R01AG015819, RF1AG057440, P30AG010161, R01AG053987, P30AG066507, P30AG072975)
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
  • Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
Keywords
Alzheimer's disease, APOE ε4 carriers, early Alzheimer's disease, brain proteomics, therapeutic target, STAT3, Src family kinases, YES1, Fyn, transgenic mouse model, human brain tissue

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

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