The origins of genome complexity
Lynch, Michael, Conery, John S.·2003·Science
Cited by (1,002)
Items 701–800 of 1,002
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- Ostreococcus tauri: seeing through the genes to the genomePatrick J. Keeling · 2007 · Trends in Genetics
- Unexpected conserved non-coding DNA blocks in mammalsDaniel J. Gaffney · 2004 · Trends in Genetics
- Scaling relationship in the gene content of transcriptional machinery in bacteriaErnesto Pérez‐Rueda, Sarath Chandra Janga, Agustino Martínez‐Antonio · 2009 · Molecular BioSystems
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- Evolution of transmission mode in obligate symbionts.Devin M. Drown, Peter C. Zee, Yaniv J Brandvain, Michael J. Wade · 2013 · PubMed
- Nonadaptive processes in primate and human evolutionEugene E. Harris · 2010 · American Journal of Physical Anthropology
- Rapid Turnover of Functional Sequence in Human and Other GenomesChris P. Ponting, Christoffer Nellåker, Stephen Meader · 2011 · Annual Review of Genomics and Human Genetics