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The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
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A survey of genetic diversity of cattle suggests two domestication events in Asia and selection by husbandry.
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“with a total length of 2,657 Mb, close to the 2,649 Mb of sequence obtained for the cattle genome 10 (UMD 3.1)”
From The yak genome and adaptation to life at high altitude (2012) · cites this paper as [10]
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“Nearly 49% of the genome is composed of repetitive elements, similar to that of cattle (48%),39 the majority of which are long interspersed nuclear elements (LINEs; 26.22%)”
From Genomes of critically endangered saola are shaped by population structure and purging (2025) · cites this paper as [39]
Experimental — accuracy not yet measuredThe check wasn’t confident either way, so it gives no verdict — never disputed.
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“The heterozygosity rate (0.89 × 10 -3 ) was approximately 1.5 times higher than that estimated for cattle (0.59 × 10 -3 ) (refs.10,13).”
From The yak genome and adaptation to life at high altitude (2012) · cites this paper as [10]
Experimental — accuracy not yet measuredIn the citing paper
“Given the estimated 22,000 genes in the bovine genome [44], the probability of there being 50 or more DEGs among the 654 aggression-associated genes was significantly above chance (p = 0.005).”
From Gene expression profiles underlying aggressive behavior in the prefrontal cortex of cattle (2021) · cites this paper as [44]
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Metadata
- Authors
- The Bovine Genome Sequencing and Analysis Consortium, Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L., Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chapple, C. E., Chen, H.-C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Langford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Iivanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y.-S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L.-L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, I. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., de Campos, T. A., De Donato, M., Santos, I. K. F. D. M., de Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dovc, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z.-L., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C.-M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., Moré, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincon, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., Weikard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J., & Zhao, F.-Q.
- Affiliations
- Baylor College of Medicine (US)
- Corresponding author
- Elsik, Christine G.
- Tellam, Ross L.
- Worley, Kim C.
- ORCID
- Elsik, Christine G.
- Tellam, Ross L.
- Worley, Kim C.
- Gibbs, Richard A.
- Muzny, Donna M.
- Weinstock, George M.
- Adelson, David L.
- Eichler, Evan E.
- Elnitski, Laura
- Lewin, Harris A.
- Lynn, David J.
- Nicholas, Frank W.
- Reymond, Alexandre
- Rijnkels, Monique
- Skow, Loren C.
- Zdobnov, Evgeny M.
- Schook, Lawrence
- Alioto, Tyler
- Antonarakis, Stylianos E.
- Hlavina, Wratko
- Kokocinski, Felix
- Landrum, Melissa
- Maglott, Donna
- Pruitt, Kim
- Solovyev, Victor
- Anzola, Juan M.
- Gerlach, Daniel
- Elhaik, Eran
- Reese, Justin T.
- Edgar, Robert C.
- McEwan, John C.
- Raison, Joy M.
- Junier, Thomas
- Kriventseva, Evgenia V.
- Eyras, Eduardo
- Plass, Mireya
- Larkin, Denis M.
- Reecy, James
- Chen, Lin
- Chitko-McKown, Carol G.
- Liu, George E.
- Song, Jiuzhou
- Zhu, Bin
- Bradley, Daniel G.
- Brinkman, Fiona S.L.
- Lau, Lilian P.L.
- Wheeler, Thomas T.
- Casey, Theresa
- German, J. Bruce
- Lemay, Danielle G.
- Maqbool, Nauman J.
- Molenaar, Adrian J.
- Seo, Seongwon
- Stothard, Paul
- Baldwin, Cynthia L.
- Childers, Christopher P.
- Connelley, Timothy
- Glass, Elizabeth J.
- Iivanainen, Antti
- Lahmers, Kevin K.
- Dickens, C. Michael
- Gilbert, James G.R.
- Hagen, Darren E.
- Aerts, Jan
- Caetano, Alexandre R.
- Dalrymple, Brian
- Gill, Clare A.
- Hiendleder, Stefan G.
- Williams, John L.
- Holt, Robert A.
- Jones, Steven J.M.
- Marra, Marco A.
- Moore, Richard
- Moore, Stephen S.
- Taniguchi, Masaaki
- Waterman, Richard C.
- Dinh, Huyen H.
- Jhangiani, Shalini N.
- Morgan, Margaret B.
- Nguyen, Ngoc Bich
- Ding, Yan
- Sabo, Aniko
- Steffen, David
- Zhang, Jingkun
- Chiu, Readman
- Liu, Yue
- Qin, Xiang
- Shen, Yufeng
- Vattathil, Selina
- Sodergren, Erica
- Wheeler, David A.
- Bennett, Gary L.
- Harhay, Gregory P.
- Hobbs, Matthew
- Keele, John W.
- Kent, Matthew P.
- Lien, Sigbjørn
- McKay, Stephanie D.
- McWilliam, Sean
- Ratnakumar, Abhirami
- Schnabel, Robert D.
- Snelling, Warren M.
- Sonstegard, Tad S.
- Taylor, Jeremy F.
- MacNeil, Michael D.
- Abbey, Colette A.
- Ahola, Virpi
- Almeida, Iassudara G.
- Biase, Fernando H.
- Carvalho, Wanessa A.
- Cheng, Ye
- Santos, Isabel K.F. de Miranda
- Fitzsimmons, Carolyn J.
- Greaser, Marion L.
- Green, Jonathan A.
- Hadsell, Darryl L.
- Harrow, Jennifer L.
- Hu, Zhi-Liang
- Ingham, Aaron
- Jensen, Kirsty
- Kapetis, Dimos
- Khatib, Hasan
- Kumar, Dinesh
- Lee, Justin C-M
- Li, Changxi
- Malinverni, Roberto
- Martin, William F.
- Martins, Natalia F.
- Maruyama, Sandra R.
- Medrano, Juan F.
- Moré, Daniela D.
- Nogueira, Marcelo F.G.
- Olsaker, Ingrid
- Pant, Sameer D.
- Rachagani, Satyanarayana
- Ranganathan, Shoba
- Riggs, Penny K.
- Rosenwald, Anne
- Shen, Libing
- Southey, Bruce R.
- Sweedler, Jonathan V.
- Tammen, Imke
- Telugu, Bhanu Prakash V.L.
- Utsunomiya, Yuri T.
- Verschoor, Chris P.
- Waardenberg, Ashley J.
- Wang, Zhiquan
- Weikard, Rosemarie
- Welsh, Thomas H.
- White, Stephen N.
- Wilming, Laurens G.
- Zhao, Feng-Qi
- Venue
- Science
- Published
- 2009-04-24
- Volume
- 324
- Issue
- 5926
- Pages
- 522-528
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC2943200
- OpenAlex
- W2154380613
- Cited by
- 1,287
- References
- 31
- Citations by year
- 2026: 23 · 2025: 48 · 2024: 41 · 2023: 47 · 2022: 56 · 2021: 73 · 2020: 80 · 2019: 79 · 2018: 60 · 2017: 60 · 2016: 67 · 2015: 90 · 2014: 81 · 2013: 96 · 2012: 122
- FWCI
- 75.07
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Scientific Electronic Library Online (São Paulo Research Foundation, Latin American and Caribbean Center on Health Sciences Information, Conselho Nacional de Desenvolvimento Científico e Tecnológico) (publishedVersion)
- PubMed Central (acceptedVersion)
- ResearchOnline at James Cook University (James Cook University) (submittedVersion)
- UVaDOC UVaDOC University of Valladolid Documentary Repository (University of Valladolid) (submittedVersion, other-oa)
- National University of Singapore (submittedVersion)
- ScholarWorks@UMassAmherst (University of Massachusetts Amherst) (submittedVersion, cc-by-nc-nd)
- HAL (submittedVersion)
- Acervo Digital da Universidade Estadual Paulista (Universidade Estadual Paulista) (submittedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Document Server@UHasselt (UHasselt) (submittedVersion)
- TECNALIA Publications (Fundación TECNALIA Research & Innovation) (submittedVersion)
- Hispana (submittedVersion, other-oa)
- IRIS (submittedVersion)
- Jukuri (Natural Resources Institute Finland (Luke)) (submittedVersion)
- Lirias (submittedVersion)
- Lund University Publications (Lund University) (submittedVersion)
- ANU Open Research (Australian National University) (submittedVersion)
- Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, other-oa)
- UNESP Institutional Repository (São Paulo State University) (submittedVersion)
- Griffith Research Online (submittedVersion)
- CONICET Digital (CONICET) (submittedVersion, cc-by-nc-sa)
- SERVAL (Université de Lausanne) (submittedVersion)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion, cc-by)
- Funders
- Wellcome Trust (062023, 077198)
- Biotechnology and Biological Sciences Research Council (BB/D524040/2, BBS/B/13438, BBS/B/13446)
- National Institute on Drug Abuse (P30DA018310)
- National Human Genome Research Institute (U54HG003273)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Keywords
- cattle genome, taurine cattle, ruminant evolution, mammalian evolution, orthologs, segmental duplication, repetitive elements, gene deletion, livestock genetic improvement, meat and milk production
- MeSH terms
- Animals, Animals, Domestic, Cattle, Biological Evolution, Female, Humans, Male, Molecular Sequence Data, Proteins, Species Specificity, Genetic Variation, Genome, Alternative Splicing, Sequence Analysis, DNA, Evolution, Molecular, Synteny, MicroRNAs
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