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The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
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A survey of genetic diversity of cattle suggests two domestication events in Asia and selection by husbandry.
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“with a total length of 2,657 Mb, close to the 2,649 Mb of sequence obtained for the cattle genome 10 (UMD 3.1)”
From The yak genome and adaptation to life at high altitude (2012) · cites this paper as [10]
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“Nearly 49% of the genome is composed of repetitive elements, similar to that of cattle (48%),39 the majority of which are long interspersed nuclear elements (LINEs; 26.22%)”
From Genomes of critically endangered saola are shaped by population structure and purging (2025) · cites this paper as [39]
Experimental — accuracy not yet measuredThe check wasn’t confident either way, so it gives no verdict — never disputed.
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“The heterozygosity rate (0.89 × 10 -3 ) was approximately 1.5 times higher than that estimated for cattle (0.59 × 10 -3 ) (refs.10,13).”
From The yak genome and adaptation to life at high altitude (2012) · cites this paper as [10]
Experimental — accuracy not yet measuredIn the citing paper
“Given the estimated 22,000 genes in the bovine genome [44], the probability of there being 50 or more DEGs among the 654 aggression-associated genes was significantly above chance (p = 0.005).”
From Gene expression profiles underlying aggressive behavior in the prefrontal cortex of cattle (2021) · cites this paper as [44]
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Cites
Cellular Scaling Rules for the Brains of Marsupials: Not as “Primitive” as Expected
Santos, S. E. D., Porfírio, J., Cunha, F., Manger, P. R., Tavares, W. C., Pessôa, L. M., Raghanti, M. A., Sherwood, C. C., & Herculano‐Houzel, S. (2017) · Brain Behavior and Evolution · doi:10.1159/000452856 · Cited by 2,652
FcRn: the neonatal Fc receptor comes of age
Roopenian, D. C., & Akilesh, S. (2007) · Nature Reviews Immunology · doi:10.1038/nri2155 · Cited by 2,346
Viruses and interferon: a fight for supremacy
Katze, M. G., He, Y., & Gale, M. (2002) · Nature Reviews Immunology · doi:10.1038/nri888 · Cited by 1,419
Recent Segmental Duplications in the Human Genome
Bailey, J. A., Gu, Z., Clark, R. A., Reinert, K., Samonte, R. V., Schwartz, S., Adams, M. D., Myers, E. W., Li, P. W., & Eichler, E. E. (2002) · Science · doi:10.1126/science.1072047 · Cited by 1,355
Self-citationEvidence for higher rates of nucleotide substitution in rodents than in man.
Wu, C., & Li, W. (1985) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.82.6.1741 · Cited by 909
Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps
Murphy, W. J., Larkin, D. M., der Wind, A. E.-V., Bourque, G., Tesler, G., Auvil, L. S., Beever, J. E., Chowdhary, B. P., Galibert, F., Gatzke, L., et al. (2005) · Science · doi:10.1126/science.1111387 · Cited by 603
Self-citationPrimate segmental duplications: crucibles of evolution, diversity and disease
Bailey, J. A., & Eichler, E. E. (2006) · Nature Reviews Genetics · doi:10.1038/nrg1895 · Cited by 594
Self-citationModrek, B., & Lee, C. J. (2003) · Nature Genetics · doi:10.1038/ng1159 · Cited by 523
Mammalian phylogenomics comes of age
Murphy, W. J., Pevzner, P. A., & O’Brien, S. J. (2004) · Trends in Genetics · doi:10.1016/j.tig.2004.09.005 · Cited by 352
Zhang, S., Boisson‐Dupuis, S., Chapgier, A. L. A., Yang, K., Bustamante, J. C., Puel, A., Pïcard, C., Abel, L., Jouanguy, E., & Casanova, J. (2008) · Immunological Reviews · doi:10.1111/j.1600-065x.2008.00698.x · Cited by 334
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Items 201–300 of 999
Mai, M. D., Sahana, G., Christiansen, F., et al. (2010) · Journal of Animal Science · doi:10.2527/jas.2009-2713 · Cited by 72
Jonas, E., & de Koning, D. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00049 · Cited by 79
Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary
Molnár, J., Nagy, T., Stéger, V., Tóth, G., Marincs, F., & Barta, E. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-761 · Cited by 73
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Sodeland, M., Kent, M., Olsen, H. G., Opsal, M. A., Svendsen, M., Sehested, E., Hayes, B. J., & Lien, S. (2011) · Animal Genetics · doi:10.1111/j.1365-2052.2010.02165.x · Cited by 73
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Damas, J., Corbo, M., & Lewin, H. A. (2020) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-020518-114924 · Cited by 73
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Oliveira, L. J., Barreto, R., Perecin, F., Mansouri-Attia, N., Pereira, F. T. V., & Meirelles, F. V. (2012) · Reproduction in Domestic Animals · doi:10.1111/j.1439-0531.2012.02102.x · Cited by 75
Ten years of genetics and genomics: what have we achieved and where are we heading?
Heard, É., Tishkoff, S. A., Todd, J. A., Vidal, M., Wagner, G. P., Wang, J., Weigel, D., & Young, R. A. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2878 · Cited by 71
Ichiyanagi, K. (2013) · Genes & Genetic Systems · doi:10.1266/ggs.88.19 · Cited by 70
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Roberts, R. M., Smith, G. W., Bazer, F. W., Cibelli, J. B., Seidel, G. E., Bauman, D. E., Reynolds, L. P., & Ireland, J. J. (2009) · Science · doi:10.1126/science.1168521 · Cited by 70
Baldwin, C. L., & Telfer, J. C. (2014) · Molecular Immunology · doi:10.1016/j.molimm.2014.10.024 · Cited by 73
Self-citationJúnior, G. A. F., de Oliveira, H. N., Carvalheiro, R., Cardoso, D. F., Fonseca, L. F. S., Ventura, R. V., & de Albuquerque, L. G. (2020) · Scientific Reports · doi:10.1038/s41598-020-66272-7 · Cited by 70
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Sustainable improvement of animal production and health.
Odongo, N. E., García, M. A., & Viljoen, G. J. (2010) · Cited by 68
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Self-citationGünther, J., Petzl, W., Zerbe, H., Schuberth, H., Koczan, D., Goetze, L., & Seyfert, H. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-17 · Cited by 69
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Self-citationHuang, W., Long, N., & Khatib, H. (2012) · Animal Genetics · doi:10.1111/j.1365-2052.2012.02325.x · Cited by 67
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Applications of Omics Technology for Livestock Selection and Improvement
Chakraborty, D., Sharma, N., Kour, S., Sodhi, S. S., Gupta, M. K., Lee, S., & Son, Y. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.774113 · Cited by 74
Self-citationCopy number variation in the cattle genome
Liu, G. E., & Bickhart, D. M. (2012) · Functional & Integrative Genomics · doi:10.1007/s10142-012-0289-9 · Cited by 66
Self-citationIn vitro systems for intercepting early embryo-maternal cross-talk in the bovine oviduct
Ulbrich, S. E., Zitta, K., Hiendleder, S., et al. (2009) · Theriogenology · doi:10.1016/j.theriogenology.2009.09.036 · Cited by 66
Self-citationPiersanti, R. L., Zimpel, R., Molinari, P. C. C., et al. (2019) · Journal of Dairy Science · doi:10.3168/jds.2018-15595 · Cited by 66
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Rowan, T. N., Hoff, J. L., Crum, T. E., Taylor, J. F., Schnabel, R. D., & Decker, J. E. (2019) · Genetics Selection Evolution · doi:10.1186/s12711-019-0519-x · Cited by 67
Self-citationYan, Z., Huang, H., Freebern, E., Santos, D. J. D. A., Dai, D., Si, J., Ma, C., Cao, J., Guo, G., Liu, G. E., et al. (2020) · BMC Genomics · doi:10.1186/s12864-020-06909-z · Cited by 69
Self-citationApplications of mesenchymal stem cell technology in bovine species
Hill, A. B. T., Bressan, F. F., Murphy, B. D., & Garcia, J. M. (2019) · Stem Cell Research & Therapy · doi:10.1186/s13287-019-1145-9 · Cited by 66
Self-citationAntiviral activity of bovine type III interferon against foot-and-mouth disease virus
Segundo, F. D.-S., Weiss, M., Pérez-Martín, E., et al. (2011) · Virology · doi:10.1016/j.virol.2011.02.023 · Cited by 65
Hudson, N. J., Reverter, A., Wang, Y., Greenwood, P. L., & Dalrymple, B. P. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007249 · Cited by 64
Self-citationBrief introduction to whole-genome selection in cattle using single nucleotide polymorphisms
Seidel, G. E. (2009) · Reproduction Fertility and Development · doi:10.1071/rd09220 · Cited by 68
Perrier, J., Sellem, E., Prézelin, A., Gasselin, M., Jouneau, L., Piumi, F., Adhami, H. A., Weber, M., Fritz, S., Boichard, D., et al. (2018) · BMC Genomics · doi:10.1186/s12864-018-4764-0 · Cited by 66
Detection of copy number variations and their effects in Chinese bulls
Zhang, L., Jia, S., Yang, M., Xu, Y., Li, C., Sun, J., Huang, Y., Lan, X., Lei, C., Zhou, Y., et al. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-480 · Cited by 63
Self-citationAn Integrative Breakage Model of genome architecture, reshuffling and evolution
Farré, M., Robinson, T. J., & Ruiz‐Herrera, A. (2015) · BioEssays · doi:10.1002/bies.201400174 · Cited by 70
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Greenaway, H. Y., Ng, B., Price, D. A., Douek, D. C., Davenport, M. P., & Venturi, V. (2012) · Immunobiology · doi:10.1016/j.imbio.2012.04.003 · Cited by 64
O’Connor, R. E., Farré, M., Joseph, S., Damas, J., Kiazim, L. G., Jennings, R., Bennett, S., Slack, E., Allanson, E., Larkin, D. M., et al. (2018) · Genome biology · doi:10.1186/s13059-018-1550-x · Cited by 65
Self-citationPintus, E., Sorbolini, S., Albera, A., Gaspa, G., Dimauro, C., Steri, R., Marras, G., & Macciotta, N. P. P. (2013) · Animal Genetics · doi:10.1111/age.12076 · Cited by 62
Rehman, S. U., Hassan, F., Luo, X., Li, Z., & Liu, Q. (2021) · Animals · doi:10.3390/ani11030904 · Cited by 68
Baxter, R., Craigmile, S., Haley, C., et al. (2009) · Vaccine · doi:10.1016/j.vaccine.2009.09.131 · Cited by 62
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Liu, X., Liu, W., Lenstra, J. A., Zheng, Z., Wu, X., Jiao, Y., Li, B., Yang, Y. P., Qiu, Q., Liu, H., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41220-x · Cited by 63
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Tellam, R. L., Cockett, N., Vuocolo, T., & Bidwell, C. A. (2012) · Frontiers in Genetics · doi:10.3389/fgene.2012.00164 · Cited by 68
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Huang, Y., Li, Y., Wang, X., Yu, J., Cai, Y., Zheng, Z., Li, R., Zhang, S., Chen, N., Nanaei, H. A., et al. (2021) · Science China Life Sciences · doi:10.1007/s11427-020-1850-x · Cited by 62
Self-citationMagee, D. A., Sikora, K. M., Berkowicz, E. W., Berry, D. P., Howard, D. J., Mullen, M. P., Evans, R. D., Spillane, C., & MacHugh, D. E. (2010) · BMC Genetics · doi:10.1186/1471-2156-11-93 · Cited by 60
Crysnanto, D., & Pausch, H. (2020) · Genome biology · doi:10.1186/s13059-020-02105-0 · Cited by 59
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Howald, C., Andrea Tanzer, A., Chrast, J., Kokocinski, F., Derrien, T., Walters, N., González, J. M., Frankish, A., Aken, B. L., Hourlier, T., et al. (2012) · Genome Research · doi:10.1101/gr.134478.111 · Cited by 62
Self-citationLiu, S., Yu, Y., Zhang, S., Cole, J. B., Tenesa, A., Wang, T., McDaneld, T. G., Ma, L., Liu, G. E., & Fang, L. (2020) · BMC Biology · doi:10.1186/s12915-020-00792-6 · Cited by 60
Self-citationHennig, S. L., Owen, J. R., Lin, J. C., Young, A. E., Ross, P. J., Eenennaam, A. L. V., & Murray, J. D. (2020) · Scientific Reports · doi:10.1038/s41598-020-78264-8 · Cited by 58
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Lewis, J., Abas, Z., Dadousis, C., Lykidis, D., Paschou, P., & Petros Drineas, B. (2011) · PLoS ONE · doi:10.1371/journal.pone.0018007 · Cited by 61
Barendse, W. (2011) · PLoS ONE · doi:10.1371/journal.pone.0029601 · Cited by 61
Smith, T. P. L., Bickhart, D. M., Boichard, D., Chamberlain, A. J., Djikeng, A., Jiang, Y., Low, W. Y., Pausch, H., Demyda-Peyrás, S., Prendergast, J., et al. (2023) · Genome biology · doi:10.1186/s13059-023-02975-0 · Cited by 57
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Bathla, S., Rawat, P., Baithalu, R. K., Yadav, M. L., Naru, J., Tiwari, A. K., Kumar, S., Balhara, A. K., Singh, S., Chaudhary, S., et al. (2015) · Journal of Proteomics · doi:10.1016/j.jprot.2015.05.026 · Cited by 58
The mammary gland in domestic ruminants: A systems biology perspective
Ferreira, A. M., Bislev, S. L., Bendixen, E., & de Almeida, A. M. (2013) · Journal of Proteomics · doi:10.1016/j.jprot.2013.09.012 · Cited by 63
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Igea, J., Javier Juste, B., & Castresana, J. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-369 · Cited by 58
Harhay, G. P., Smith, T. P. L., Alexander, L. J., Haudenschild, C. D., Keele, J. W., Matukumalli, L. K., Schroeder, S., Tassell, C. P. V., Gresham, C. R., Bridges, S. M., et al. (2010) · Genome biology · doi:10.1186/gb-2010-11-10-r102 · Cited by 58
Self-citationGebert, D., Ketting, R. F., Zischler, H., & Rosenkranz, D. (2015) · PLoS ONE · doi:10.1371/journal.pone.0124860 · Cited by 59
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Mei, C., Junjvlieke, Z., Raza, S. H. A., Wang, H., Cheng, G., Zhao, C., Zhu, W., & Zan, L. (2019) · Genomics · doi:10.1016/j.ygeno.2019.05.023 · Cited by 58
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Self-citationBarazandeh, A., Mohammadabadi, M., Ghaderi‐Zefrehei, M., & Nezamabadi–pour, H. (2016) · Czech Journal of Animal Science · doi:10.17221/78/2015-cjas · Cited by 58
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Self-citationWhole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection
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Self-citationSermyagin, А. А., Dotsev, A. V., Александровна, Г. Е., Traspov, A., Deniskova, T. E., Kostyunina, O., Reyer, H., Wimmers, K., Barbato, M., Paronyan, I. A., et al. (2018) · Genetics Selection Evolution · doi:10.1186/s12711-018-0408-8 · Cited by 61
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Passamonti, M. M., Somenzi, E., Barbato, M., Chillemi, G., Colli, L., Joost, S., Milanesi, M., Negrini, R., Santini, M., Vajana, E., et al. (2021) · Animals · doi:10.3390/ani11102833 · Cited by 66
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Li, D., He, M., Tang, Q., Tian, S., Zhang, J., Li, Y., Wang, D., Jin, L. G., Ning, C., Zhu, W., et al. (2022) · BMC Biology · doi:10.1186/s12915-022-01301-7 · Cited by 61
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Polejaeva, I. A., Rutigliano, H. M., & Wells, K. D. (2015) · Reproduction Fertility and Development · doi:10.1071/rd15343 · Cited by 55
Fisher, C. A., Bhattarai, E. K., Osterstock, J. B., Dowd, S. E., Seabury, P. M., Vikram, M., Whitlock, R. H., Schukken, Y. H., Schnabel, R. D., Taylor, J. F., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0027744 · Cited by 60
Self-citationThe Yak genome database: an integrative database for studying yak biology and high-altitude adaption
Hu, Q., Ma, T., Wang, K., Xu, T., Liu, J., & Qiu, Q. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-600 · Cited by 58
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Bai, Y., Sartor, M. A., & Cavalcoli, J. D. (2012) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/2049-1891-3-8 · Cited by 55
Ibeagha-Awemu, E. M., Li, R., Ammah, A. A., Dudemaine, P.-L., Bissonnette, N., Benchaar, C., & Zhao, X. (2016) · BMC Genomics · doi:10.1186/s12864-016-2423-x · Cited by 55
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Heaton, M. P., Smith, T. P. L., Bickhart, D. M., Vander Ley, B. L., Kuehn, L. A., Oppenheimer, J., Shafer, W. R., Schuetze, F. T., Stroud, B., McClure, J. C., et al. (2021) · Journal of Heredity · doi:10.1093/jhered/esab002 · Cited by 52
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Attwood, G. T., Wakelin, S. A., Leahy, S. C., Rowe, S. J., Clarke, S., Chapman, D. F., Muirhead, R. W., & Jacobs, J. M. E. (2019) · Frontiers in Nutrition · doi:10.3389/fnut.2019.00107 · Cited by 59
O’Neill, C. J., Swain, D. L., & Kadarmideen, H. N. (2010) · Evolutionary Applications · doi:10.1111/j.1752-4571.2010.00151.x · Cited by 58
de Sousa-Pereira, P., Amado, F., Abrantes, J., Ferreira, R., Esteves, P., & Vitorino, R. (2013) · Archives of Oral Biology · doi:10.1016/j.archoralbio.2012.12.011 · Cited by 53
Herzig, C. T. A., & Baldwin, C. L. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-191 · Cited by 54
Self-citationAarabi, M., Yu, Y., Xu, W., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0033496 · Cited by 54
Glass, E. J., Crutchley, S., & Jensen, K. (2012) · Veterinary Immunology and Immunopathology · doi:10.1016/j.vetimm.2012.03.006 · Cited by 55
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Barbero, M. M. D., Cánovas, Á., Rojas, C. M., Riley, D. G., Luna‐Nevárez, P., Coleman, S. J., Speidel, S. E., Enns, R. M., Islas‐Trejo, A., Medrano, J. F. F., et al. (2017) · Genetics and Molecular Research · doi:10.4238/gmr16019522 · Cited by 55
Self-citationIchiyanagi, K., Li, Y., Watanabe, T., Ichiyanagi, T., Fukuda, K., Kitayama, J., Yamamoto, Y., Kuramochi‐Miyagawa, S., Nakano, T., Yabuta, Y., et al. (2011) · Genome Research · doi:10.1101/gr.123679.111 · Cited by 56
Purdie, A. C., Plain, K. M., Begg, D., de Silva, K., & Whittington, R. (2011) · Comparative Immunology, Microbiology & Infectious Diseases · doi:10.1016/j.cimid.2010.12.003 · Cited by 51
Shin, D., Lee, H. J., Cho, S., Kim, H. J., Hwang, J. Y., Lee, C., Jeong, J., Yoon, D., & Kim, H. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-240 · Cited by 52
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Drögemüller, C., Tetens, J., Sigurðsson, S., Gentile, A., Testoni, S., Lindblad‐Toh, K., & Leeb, T. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1001079 · Cited by 53
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Farré, M., Kim, J., Proskuryakova, A. A., Zhang, Y., Kulemzina, A. I., Li, Q., Zhou, Y., Xiong, Y., Johnson, J. L., Perelman, P. L., et al. (2019) · Genome Research · doi:10.1101/gr.239863.118 · Cited by 52
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Porto-Neto, L. R., Bunch, R. J., Harrison, B. E., & Barendse, W. (2012) · Animal Genetics · doi:10.1111/j.1365-2052.2012.02330.x · Cited by 51
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Metadata
- Authors
- The Bovine Genome Sequencing and Analysis Consortium, Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L., Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chapple, C. E., Chen, H.-C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Langford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Iivanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y.-S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L.-L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, I. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., de Campos, T. A., De Donato, M., Santos, I. K. F. D. M., de Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dovc, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z.-L., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C.-M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., Moré, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincon, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., Weikard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J., & Zhao, F.-Q.
- Affiliations
- Baylor College of Medicine (US)
- Corresponding author
- Elsik, Christine G.
- Tellam, Ross L.
- Worley, Kim C.
- ORCID
- Elsik, Christine G.
- Tellam, Ross L.
- Worley, Kim C.
- Gibbs, Richard A.
- Muzny, Donna M.
- Weinstock, George M.
- Adelson, David L.
- Eichler, Evan E.
- Elnitski, Laura
- Lewin, Harris A.
- Lynn, David J.
- Nicholas, Frank W.
- Reymond, Alexandre
- Rijnkels, Monique
- Skow, Loren C.
- Zdobnov, Evgeny M.
- Schook, Lawrence
- Alioto, Tyler
- Antonarakis, Stylianos E.
- Hlavina, Wratko
- Kokocinski, Felix
- Landrum, Melissa
- Maglott, Donna
- Pruitt, Kim
- Solovyev, Victor
- Anzola, Juan M.
- Gerlach, Daniel
- Elhaik, Eran
- Reese, Justin T.
- Edgar, Robert C.
- McEwan, John C.
- Raison, Joy M.
- Junier, Thomas
- Kriventseva, Evgenia V.
- Eyras, Eduardo
- Plass, Mireya
- Larkin, Denis M.
- Reecy, James
- Chen, Lin
- Chitko-McKown, Carol G.
- Liu, George E.
- Song, Jiuzhou
- Zhu, Bin
- Bradley, Daniel G.
- Brinkman, Fiona S.L.
- Lau, Lilian P.L.
- Wheeler, Thomas T.
- Casey, Theresa
- German, J. Bruce
- Lemay, Danielle G.
- Maqbool, Nauman J.
- Molenaar, Adrian J.
- Seo, Seongwon
- Stothard, Paul
- Baldwin, Cynthia L.
- Childers, Christopher P.
- Connelley, Timothy
- Glass, Elizabeth J.
- Iivanainen, Antti
- Lahmers, Kevin K.
- Dickens, C. Michael
- Gilbert, James G.R.
- Hagen, Darren E.
- Aerts, Jan
- Caetano, Alexandre R.
- Dalrymple, Brian
- Gill, Clare A.
- Hiendleder, Stefan G.
- Williams, John L.
- Holt, Robert A.
- Jones, Steven J.M.
- Marra, Marco A.
- Moore, Richard
- Moore, Stephen S.
- Taniguchi, Masaaki
- Waterman, Richard C.
- Dinh, Huyen H.
- Jhangiani, Shalini N.
- Morgan, Margaret B.
- Nguyen, Ngoc Bich
- Ding, Yan
- Sabo, Aniko
- Steffen, David
- Zhang, Jingkun
- Chiu, Readman
- Liu, Yue
- Qin, Xiang
- Shen, Yufeng
- Vattathil, Selina
- Sodergren, Erica
- Wheeler, David A.
- Bennett, Gary L.
- Harhay, Gregory P.
- Hobbs, Matthew
- Keele, John W.
- Kent, Matthew P.
- Lien, Sigbjørn
- McKay, Stephanie D.
- McWilliam, Sean
- Ratnakumar, Abhirami
- Schnabel, Robert D.
- Snelling, Warren M.
- Sonstegard, Tad S.
- Taylor, Jeremy F.
- MacNeil, Michael D.
- Abbey, Colette A.
- Ahola, Virpi
- Almeida, Iassudara G.
- Biase, Fernando H.
- Carvalho, Wanessa A.
- Cheng, Ye
- Santos, Isabel K.F. de Miranda
- Fitzsimmons, Carolyn J.
- Greaser, Marion L.
- Green, Jonathan A.
- Hadsell, Darryl L.
- Harrow, Jennifer L.
- Hu, Zhi-Liang
- Ingham, Aaron
- Jensen, Kirsty
- Kapetis, Dimos
- Khatib, Hasan
- Kumar, Dinesh
- Lee, Justin C-M
- Li, Changxi
- Malinverni, Roberto
- Martin, William F.
- Martins, Natalia F.
- Maruyama, Sandra R.
- Medrano, Juan F.
- Moré, Daniela D.
- Nogueira, Marcelo F.G.
- Olsaker, Ingrid
- Pant, Sameer D.
- Rachagani, Satyanarayana
- Ranganathan, Shoba
- Riggs, Penny K.
- Rosenwald, Anne
- Shen, Libing
- Southey, Bruce R.
- Sweedler, Jonathan V.
- Tammen, Imke
- Telugu, Bhanu Prakash V.L.
- Utsunomiya, Yuri T.
- Verschoor, Chris P.
- Waardenberg, Ashley J.
- Wang, Zhiquan
- Weikard, Rosemarie
- Welsh, Thomas H.
- White, Stephen N.
- Wilming, Laurens G.
- Zhao, Feng-Qi
- Venue
- Science
- Published
- 2009-04-24
- Volume
- 324
- Issue
- 5926
- Pages
- 522-528
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC2943200
- OpenAlex
- W2154380613
- Cited by
- 1,287
- References
- 31
- Citations by year
- 2026: 23 · 2025: 48 · 2024: 41 · 2023: 47 · 2022: 56 · 2021: 73 · 2020: 80 · 2019: 79 · 2018: 60 · 2017: 60 · 2016: 67 · 2015: 90 · 2014: 81 · 2013: 96 · 2012: 122
- FWCI
- 75.07
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Scientific Electronic Library Online (São Paulo Research Foundation, Latin American and Caribbean Center on Health Sciences Information, Conselho Nacional de Desenvolvimento Científico e Tecnológico) (publishedVersion)
- PubMed Central (acceptedVersion)
- ResearchOnline at James Cook University (James Cook University) (submittedVersion)
- UVaDOC UVaDOC University of Valladolid Documentary Repository (University of Valladolid) (submittedVersion, other-oa)
- National University of Singapore (submittedVersion)
- ScholarWorks@UMassAmherst (University of Massachusetts Amherst) (submittedVersion, cc-by-nc-nd)
- HAL (submittedVersion)
- Acervo Digital da Universidade Estadual Paulista (Universidade Estadual Paulista) (submittedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Document Server@UHasselt (UHasselt) (submittedVersion)
- TECNALIA Publications (Fundación TECNALIA Research & Innovation) (submittedVersion)
- Hispana (submittedVersion, other-oa)
- IRIS (submittedVersion)
- Jukuri (Natural Resources Institute Finland (Luke)) (submittedVersion)
- Lirias (submittedVersion)
- Lund University Publications (Lund University) (submittedVersion)
- ANU Open Research (Australian National University) (submittedVersion)
- Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, other-oa)
- UNESP Institutional Repository (São Paulo State University) (submittedVersion)
- Griffith Research Online (submittedVersion)
- CONICET Digital (CONICET) (submittedVersion, cc-by-nc-sa)
- SERVAL (Université de Lausanne) (submittedVersion)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion, cc-by)
- Funders
- Wellcome Trust (062023, 077198)
- Biotechnology and Biological Sciences Research Council (BB/D524040/2, BBS/B/13438, BBS/B/13446)
- National Institute on Drug Abuse (P30DA018310)
- National Human Genome Research Institute (U54HG003273)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Keywords
- cattle genome, taurine cattle, ruminant evolution, mammalian evolution, orthologs, segmental duplication, repetitive elements, gene deletion, livestock genetic improvement, meat and milk production
- MeSH terms
- Animals, Animals, Domestic, Cattle, Biological Evolution, Female, Humans, Male, Molecular Sequence Data, Proteins, Species Specificity, Genetic Variation, Genome, Alternative Splicing, Sequence Analysis, DNA, Evolution, Molecular, Synteny, MicroRNAs
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