Regulation of histone acetylation in the nucleus by sphingosine-1-phosphate
Open accessAbstract
Epigenetic Signals: The lipid sphingosine-1-phosphate (S1P) is a signaling molecule that binds to receptors on the cell surface to initiate biochemical changes that control a range of biological processes from growth and survival to immune reactions. Hait et al. (p. 1254 ) report that S1P can also function by direct binding to the nuclear enzymes, histone deacetylases (HDACs) 1 and 2. The enzyme that generates S1P, sphingosine kinase 2 (ShpK2) is present in the nucleus in complexes with HDAC1 and HDAC2. Generation of S1P and its binding to HDACs inhibited deacetylation of histone. Such histone modification is an epigenetic mechanism that controls gene transcription. Thus, generation of S1P in the nucleus appears to be a signaling mechanism by which cells can control gene expression in response to various stimuli.
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S1P and FTY720-P function as inhibitors of histone deacetylases (HDAC).
“Because S1P and FTY720-P have been reported to function as inhibitors of histone deacetylases (HDAC) (34, 35)”
From Nuclear SphK2/S1P signaling is a key regulator of ApoE production and Aβ uptake in astrocytes (2024) · cites this paper as [34]
The paper reports that S1P inhibits HDAC activity, including the activity of HDAC1 and HDAC2 (passage [1], section labeled Abstract; page unavailable). Our copy does not report that FTY720-P inhibits HDACs; searches for FTY720-P and fingolimod phosphate found no supporting passage. (LLM, conf=0.88)
Experimental — accuracy not yet measuredS1P has been reported to repress HDAC activity.
“S1P has been reported to repress HDAC activity (34)”
From Nuclear SphK2/S1P signaling is a key regulator of ApoE production and Aβ uptake in astrocytes (2024) · cites this paper as [34]
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Research works printed but not linked: 21
- [1]Irvine RF Nat Rev Mol Cell Biol 4 349 2003 12728269
- [2]Cocco L Maraldi NM Manzoli FA Gilmour RS Lang A Biochem Biophys Res Commun 96 890 1980 6158946
- [3]Albi E Lazzarini R Viola Magni M Biochem J 410 381 2008 18001268
- [4]Spiegel S Milstien S Nat Rev Mol Cell Biol 4 397 2003 12728273
- [5]Chun J Rosen H Curr Pharm Des 12 161 2006 16454733
- [6]Schwab SR Cyster JG Nat Immunol 8 1295 2007 18026082
- [7]Spiegel S Milstien S J Biol Chem 282 2125 2007 17135245
- [8]Ding G J Biol Chem 282 27493 2007 17635916
- [10]Sankala HM Cancer Res 67 10466 2007 17974990
- [11]Liu H J Biol Chem 275 19513 2000 10751414
- [12]Clayton AL Hazzalin CA Mahadevan LC Mol Cell 23 289 2006 16885019
- [13]Yang XJ Seto E Nat Rev Mol Cell Biol 9 206 2008 18292778 PMC2667380
- [14]Finnin MS Nature 401 188 1999 10490031
- [15]Hait NC Bellamy A Milstien S Kordula T Spiegel S J Biol Chem 282 12058 2007 17311928
- [16]Lagger G EMBO J 21 2672 2002 12032080 PMC126040
- [17]Gui CY Ngo L Xu WS Richon VM Marks PA Proc Natl Acad Sci USA 101 1241 2004 14734806 PMC337037
- [18]Minucci S Pelicci PG Nat Rev Cancer 6 38 2006 16397526
- [19]Dokmanovic M Clarke C Marks PA Mol Cancer Res 5 981 2007 17951399
- [20]O’Donnell A Yang SH Sharrocks AD Mol Cell 29 780 2008 18374651 PMC3574235
- [21]Haberland M Montgomery RL Olson EN Nat Rev Genet 10 32 2009 19065135 PMC3215088
- [22]Mitra P Payne SG Milstien S Spiegel S Methods Enzymol 434 257 2007 17954252
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- Authors
- Hait, N. C., Allegood, J., Maceyka, M., Strub, G. M., Harikumar, K. B., Singh, S. K., Luo, C., Marmorstein, R., Kordula, T., Milstien, S., & Spiegel, S.
- Affiliations
- Virginia Commonwealth University (US)
- The Wistar Institute (US)
- National Institutes of Health (US)
- Corresponding author
- Spiegel, Sarah
- ORCID
- Venue
- Science
- Published
- 2009-09-04
- Volume
- 325
- Issue
- 5945
- Pages
- 1254-1257
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC2850596
- OpenAlex
- W1996605319
- Cited by
- 997
- References
- 0
- Citations by year
- 2026: 37 · 2025: 33 · 2024: 47 · 2023: 47 · 2022: 50 · 2021: 74 · 2020: 68 · 2019: 55 · 2018: 71 · 2017: 69 · 2016: 65 · 2015: 56 · 2014: 65 · 2013: 74 · 2012: 70
- FWCI
- 23.25
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- National Cancer Institute (R01CA061774)
- National Institute of General Medical Sciences (R01GM060293, R37GM043880)
- National Institute of Neurological Disorders and Stroke (F30NS058008)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Sphingolipid Metabolism and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Histone Deacetylase Inhibitors Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- sphingosine-1-phosphate, histone acetylation, histone deacetylase, HDAC1, HDAC2, sphingosine kinase 2, histone H3, epigenetic regulation, transcriptional regulation, p21, c-fos, repressor complex
- MeSH terms
- Sphingosine Kinase, Acetylation, Cell Nucleus, Histone Deacetylases, Histones, Humans, Lysine, Lysophospholipids, Nucleosomes, Promoter Regions, Genetic, Repressor Proteins, Sphingosine, Tetradecanoylphorbol Acetate, Genes, fos, Phosphotransferases (Alcohol Group Acceptor), Catalytic Domain, RNA Interference, Epigenesis, Genetic, Cell Line, Tumor, Cyclin-Dependent Kinase Inhibitor p21, Histone Deacetylase 1, Histone Deacetylase 2, Histone Deacetylase Inhibitors
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