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Comparative Functional Genomics of the Fission Yeasts
Open accessAbstract
A combined analysis of genome sequence, structure, and expression gives insights into fission yeast biology.
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“Yeast serves as a crucial microorganism during the initial stage of liquid fermentation in fruit vinegar production. Its primary function is to convert sugars into ethanol and carbon dioxide, even under aerobic conditions [45,46].”
From The Metabolic Pathways of Yeast and Acetic Acid Bacteria During Fruit Vinegar Fermentation and Their Influence on Flavor Development (2025) · cites this paper as [46]
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“This group was not enriched for lncRNAs conserved in other fission yeast species (Rhind et al., 2011).”
From Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells (2012) · cites this paper as Rhind et al., 2011
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Metadata
- Authors
- Rhind, N., Chen, Z., Yassour, M., Thompson, D. A., Haas, B. J., Habib, N., Wapinski, I., Roy, S., Lin, M. F., Heiman, D. I., Young, S. K., Furuya, K., Guo, Y., Pidoux, A., Chen, H. M., Robbertse, B., Goldberg, J. M., Aoki, K., Bayne, E. H., Berlin, A. M., Desjardins, C. A., Dobbs, E., Dukaj, L., Fan, L., FitzGerald, M. G., French, C., Gujja, S., Hansen, K., Keifenheim, D., Levin, J. Z., Mosher, R. A., Müller, C. A., Pfiffner, J., Priest, M., Russ, C., Smialowska, A., Swoboda, P., Sykes, S. M., Vaughn, M., Vengrova, S., Yoder, R., Zeng, Q., Allshire, R., Baulcombe, D., Birren, B. W., Brown, W., Ekwall, K., Kellis, M., Leatherwood, J., Levin, H., Margalit, H., Martienssen, R., Nieduszynski, C. A., Spatafora, J. W., Friedman, N., Dalgaard, J. Z., Baumann, P., Niki, H., Regev, A., & Nusbaum, C.
- Affiliations
- Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, USA.
- Broad Institute (US)
- Hebrew University of Jerusalem (IL)
- MIT Computer Science and Artificial Intelligence Laboratory (US)
- National Institute of Genetics (JP)
- National Institutes of Health (US)
- Wellcome Centre for Cell Biology (GB)
- Stony Brook University (US)
- Oregon State University (US)
- University of Massachusetts Chan Medical School (US)
- Cold Spring Harbor Laboratory (US)
- University of Cambridge (GB)
- University of Nottingham (GB)
- Södertörn University (SE)
- Karolinska Institutet (SE)
- University of Warwick (GB)
- Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
- Stowers Institute for Medical Research (US)
- Corresponding author
- Yassour, Moran
- Thompson, Dawn A.
- Haas, Brian J.
- Habib, Naomi
- Wapinski, Ilan
- Roy, Sushmita
- Regev, Aviv
- Nusbaum, Chad
- ORCID
- Chen, Zehua
- Yassour, Moran
- Thompson, Dawn A.
- Haas, Brian J.
- Habib, Naomi
- Roy, Sushmita
- Lin, Michael F.
- Heiman, David I.
- Young, Sarah K.
- Furuya, Kanji
- Guo, Yabin
- Pidoux, Alison
- Robbertse, Barbara
- Goldberg, Jonathan M.
- Aoki, Keita
- Bayne, Elizabeth H.
- Desjardins, Christopher A.
- Dukaj, Livio
- FitzGerald, Michael G.
- French, Courtney
- Hansen, Klavs
- Levin, Joshua Z.
- Mosher, Rebecca A.
- Müller, Carolin A.
- Swoboda, Peter
- Vaughn, Matthew
- Zeng, Qiandong
- Allshire, Robin
- Baulcombe, David
- Birren, Bruce W.
- Brown, William
- Ekwall, Karl
- Kellis, Manolis
- Levin, Henry
- Margalit, Hanah
- Nieduszynski, Conrad A.
- Spatafora, Joseph W.
- Friedman, Nir
- Dalgaard, Jacob Z.
- Baumann, Peter
- Niki, Hironori
- Regev, Aviv
- Nusbaum, Chad
- Venue
- Science
- Published
- 2011-05-20
- Volume
- 332
- Issue
- 6032
- Pages
- 930-936
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC3131103
- OpenAlex
- W2130412392
- Cited by
- 484
- References
- 44
- Citations by year
- 2026: 16 · 2025: 23 · 2024: 11 · 2023: 30 · 2022: 21 · 2021: 32 · 2020: 21 · 2019: 27 · 2018: 29 · 2017: 43 · 2016: 31 · 2015: 46 · 2014: 48 · 2013: 47 · 2012: 37
- FWCI
- 19.74
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory) (acceptedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, other-oa)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc)
- UEA Digital Repository (University of East Anglia) (submittedVersion)
- PMC
- Funders
- Howard Hughes Medical Institute
- National Institutes of Health (DP1OD003958)
- Biotechnology and Biological Sciences Research Council (BB/E023754/1)
- Japan Society for the Promotion of Science (22770178)
- National Human Genome Research Institute (U54HG003067, R01HG004037)
- National Institute of General Medical Sciences (R01GM069957, R01GM076396)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Keywords
- Schizosaccharomyces pombe, Schizosaccharomyces octosporus, Schizosaccharomyces japonicus, comparative genomics, antisense transcription, meiotic genes, trans-acting regulators, gene expression regulation, stress response, ethanol carbon source, Ascomycota
- MeSH terms
- Centromere, DNA Transposable Elements, Glucose, Meiosis, Molecular Sequence Data, Phylogeny, RNA, Fungal, Schizosaccharomyces, Species Specificity, Transcription Factors, Transcription, Genetic, Gene Expression Regulation, Fungal, RNA, Antisense, Genome, Fungal, Sequence Analysis, DNA, Evolution, Molecular, Gene Expression Profiling, RNA, Untranslated, Genomics, Schizosaccharomyces pombe Proteins, RNA, Small Interfering, Genes, Mating Type, Fungal, Regulatory Elements, Transcriptional, Molecular Sequence Annotation
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