Haas, Brian J.

UCHIME improves sensitivity and speed of chimera detection

Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011) · Bioinformatics

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 15,114

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B., Lieber, M., et al. (2013) · Nature Protocols

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 8,464

Next-generation characterization of the Cancer Cell Line Encyclopedia

Ghandi, M., Huang, F. W., Jané-Valbuena, J., Kryukov, G. V., Lo, C. C., McDonald, E. R., Barretina, J., Gelfand, E. T., Bielski, C. M., Li, H., et al. (2019) · Nature

Cancer Genomics and DiagnosticsChromatin Remodeling and Cancer

Cited by 3,394

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Nierman, W. C., Pain, A., Anderson, M. J., Wortman, J. R., Kim, H. S., Arroyo, J., Berriman, M., Abe, K., Archer, D. B., Bermejo, C., et al. (2005) · Nature

Fungal and yeast genetics researchAntifungal resistance and susceptibility

Cited by 1,391

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

Kowalczyk, M. S., Tirosh, I., Heckl, D., Rao, T. N., Dixit, A., Haas, B. J., Schneider, R. K., Wagers, A. J., Ebert, B. L., & Regev, A. (2015) · Genome Research

Hematopoietic Stem Cell TransplantationSingle-cell and spatial transcriptomics

Cited by 778

A Catalog of Reference Genomes from the Human Microbiome

The Human Microbiome Jumpstart Reference Strains Consortium, Nelson, K. E., Weinstock, G. M., Highlander, S. K., Worley, K. C., Creasy, H. H., Wortman, J. R., Rusch, D. B., Mitreva, M., Sodergren, E., et al. (2010) · Science

Genomics and Phylogenetic StudiesGut microbiota and health

Cited by 702

Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

Haas, B. J., Dobin, A., Li, B., Stransky, N., Pochet, N., & Regev, A. (2019) · Genome biology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 646

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

Fedorova, N. D., Khaldi, N., Joardar, V. S., Maiti, R., Amedeo, P., Anderson, M. J., Crabtree, J., Silva, J. C., Badger, J. H., Albarraq, A., et al. (2008) · PLoS Genetics

Fungal and yeast genetics researchPlant Pathogens and Fungal Diseases

Cited by 508

Comparative functional genomics of the fission yeasts

Rhind, N., Chen, Z., Yassour, M., Thompson, D. A., Haas, B. J., Habib, N., Wapinski, I., Roy, S., Lin, M. F., Heiman, D. I., et al. (2011) · Science

Fungal and yeast genetics researchGenomics and Phylogenetic Studies

Cited by 484

DAGchainer: a tool for mining segmental genome duplications and synteny

Haas, B. J., Delcher, A. L., Wortman, J. R., & Salzberg, S. L. (2004) · Bioinformatics

Genome Rearrangement AlgorithmsGenomics and Phylogenetic Studies

Cited by 381

The Capsaspora genome reveals a complex unicellular prehistory of animals

Suga, H., Chen, Z., de Mendoza, A., Sebé-Pedrós, A., Brown, M. W., Kramer, E., Carr, M., Kerner, P., Vervoort, M., Sánchez-Pons, N., et al. (2013) · Nature Communications

Protist diversity and phylogenyMarine Invertebrate Physiology and Ecology

Cited by 317

Advancing RNA-Seq analysis.

Haas, B. J., & Zody, M. C. (2010) · Nature Biotechnology

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 237

Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution

Leigh, N. D., Dunlap, G. S., Johnson, K., Mariano, R., Oshiro, R., Wong, A. Y., Bryant, D. M., Miller, B. M., Ratner, A., Chen, A., et al. (2018) · Nature Communications

Planarian Biology and ElectrostimulationDevelopmental Biology and Gene Regulation

Cited by 174

Computational discovery of internal micro-exons

Volfovsky, N., Haas, B. J., & Salzberg, S. L. (2003) · Genome Research

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 87