The DOI matches its Crossref record; 31 of the 31 references it cites were found in a registry or an index.
An Overlapping Protein-Coding Region in Influenza A Virus Segment 3 Modulates the Host Response
Open accessAbstract
Influenza's Cryptic Constraint: Because of the well-known pandemic potential of influenza viruses, it is important to understand the range of molecular interactions between the virus and its host. Despite years of intensive research on the virus, Jagger et al. (p. 199 , published online 28 June; see the Perspective by Yewdell and Ince ) have found that the influenza A virus has been hiding a gene in its small negative-sense RNA genome. An overlapping open reading frame was found contained in the PA viral RNA polymerase gene, which is accessed by ribosomal frameshifting to produce a fusion protein containing the N-terminal messenger RNA (mRNA) endonuclease domain of PA and an alternative C-terminal X domain. The resulting polypeptide, PA-X, selectively degrades host mRNAs and, in a mouse model of infection, modulated cellular immune responses, thus limiting viral pathogenesis.
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Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Garten, R. J., Davis, C. T., Russell, C. A., Shu, B., Lindstrom, S., Balish, A., Sessions, W. M., Xu, X., Skepner, E., Deyde, V., et al. (2009) · Science · doi:10.1126/science.1176225 · Cited by 2,499
Characterization of the reconstructed 1918 Spanish influenza pandemic virus
Tumpey, T. M., Basler, C. F., Aguilar, P. V., Zeng, H., Solórzano, A., Swayne, D. E., Cox, N. J., Katz, J. M., Taubenberger, J. K., Palese, P., et al. (2005) · Science · doi:10.1126/science.1119392 · Cited by 1,327
Self-citationA novel influenza A virus mitochondrial protein that induces cell death
Chen, W., Calvo, P. A., Malide, D., Gibbs, J., Schubert, U., Bacik, I., Basta, S., O'Neill, R., Schickli, J., Palese, P., et al. (2001) · Nature Medicine · doi:10.1038/nm1201-1306 · Cited by 1,040
Influenza Virus Evolution, Host Adaptation, and Pandemic Formation
Taubenberger, J. K., & Kash, J. C. (2010) · Cell Host & Microbe · doi:10.1016/j.chom.2010.05.009 · Cited by 941
Self-citationThe cap-snatching endonuclease of influenza virus polymerase resides in the PA subunit
Dias, A., Bouvier, D., Crépin, T., McCarthy, A. A., Hart, D. J., Baudin, F., Cusack, S., & Ruigrok, R. W. H. (2009) · Nature · doi:10.1038/nature07745 · Cited by 763
Large-Scale Sequence Analysis of Avian Influenza Isolates
Obenauer, J. C., Denson, J., Mehta, P. K., Su, X., Mukatira, S., Finkelstein, D. B., Xu, X., Wang, J., Ma, J., Fan, Y., et al. (2006) · Science · doi:10.1126/science.1121586 · Cited by 608
Genomic analysis of increased host immune and cell death responses induced by 1918 influenza virus
Kash, J. C., Tumpey, T. M., Proll, S. C., Carter, V., Perwitasari, O., Thomas, M. J., Basler, C. F., Palese, P., Taubenberger, J. K., García-Sastre, A., et al. (2006) · Nature · doi:10.1038/nature05181 · Cited by 551
Self-citationCrystal structure of an avian influenza polymerase PAN reveals an endonuclease active site
Yuan, P., Bartlam, M., Lou, Z., Chen, S., Zhou, J., He, X., Lv, Z., Ge, R., Li, X., Deng, T., et al. (2009) · Nature · doi:10.1038/nature07720 · Cited by 497
A dual-luciferase reporter system for studying recoding signals.
Grentzmann, G., Ingram, J. A., Kelly, P. J., Gesteland, R. F., & Atkins, J. F. (1998) · PubMed · Cited by 406
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Innate Immune Evasion by Human Respiratory RNA Viruses
Kikkert, M. (2020) · Journal of Innate Immunity · doi:10.1159/000503030 · Cited by 406
Shi, Y., Wu, Y., Zhang, W., Qi, J., & Gao, G. F. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3362 · Cited by 300
Mapping the Phosphoproteome of Influenza A and B Viruses by Mass Spectrometry
Hutchinson, E. C., Denham, E. M., Thomas, B., Trudgian, D. C., Hester, S. S., Ridlova, G., York, A., Turrell, L., & Fodor, E. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002993 · Cited by 151
Kash, J. C., Xiao, Y., Davis, A. S., Walters, K.-A., Chertow, D. S., Easterbrook, J. D., Dunfee, R. L., Sandouk, A., Jagger, B. W., Schwartzman, L. M., et al. (2014) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2013.10.014 · Cited by 43
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Metadata
- Authors
- Jagger, B. W., Wise, H. M., Kash, J. C., Walters, K.-A., Wills, N. M., Xiao, Y.-L., Dunfee, R. L., Schwartzman, L. M., Ozinsky, A., Bell, G. L., Dalton, R. M., Lo, A., Efstathiou, S., Atkins, J. F., Firth, A. E., Taubenberger, J. K., & Digard, P.
- Venue
- Science
- Published
- 2012-07-13
- Volume
- 337
- Issue
- 6091
- Pages
- 199-204
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2001788095
- Cited by
- 640
- References
- 31
- FWCI
- 51.49
- Type
- journal article
- Language
- en
- Open access
- green
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- Jagger, B. W., Wise, H. M., Kash, J. C., Walters, K.-A., Wills, N. M., Xiao, Y.-L., Dunfee, R. L., Schwartzman, L. M., Ozinsky, A., Bell, G. L., Dalton, R. M., Lo, A., Efstathiou, S., Atkins, J. F., Firth, A. E., Taubenberger, J. K., & Digard, P. (2012). An Overlapping Protein-Coding Region in Influenza A Virus Segment 3 Modulates the Host Response. Science. https://doi.org/10.1126/science.1222213
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