Blocking promiscuous activation at cryptic promoters directs cell type–specific gene expression
Open accessAbstract
Blocking somatic genes to make sperm: To generate cells with a specific identity, only a subset of genes is used. Most studies focus on factors that turn on cell type–specific gene expression. However, mechanisms are also needed to block expression of genes that specify other cell lineages. Kim et al. identified such a mechanism in the Drosophila male germ line. A multiple–zinc finger protein and a chromatin remodeler were found to act together to block transcription from cryptic promoters. These factors prevented aberrant gene expression and enabled proper differentiation in the adult sperm stem cell lineage. Science , this issue p. 717
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The repressor Kmg inhibits somatic lineage genes in Drosophila melanogaster germ cells.
“For example, the repressor Kmg inhibits somatic lineage genes in Drosophila melanogaster germ cells57.”
From Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis (2025) · cites this paper as [57]
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Deletion of <i>IKZF1</i> and Prognosis in Acute Lymphoblastic Leukemia
Mullighan, C. G., Su, X., Zhang, J., Radtke, I., Phillips, L. A. A., Miller, C. B., Ma, J., Liu, W., Cheng, C., Schulman, B. A., et al. (2009) · New England Journal of Medicine · doi:10.1056/nejmoa0808253 · Cited by 1,422 · see citing works
Port, F., Chen, H.-M., Lee, T., & Bullock, S. L. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1405500111 · Cited by 1,046 · see citing works
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Research works printed but not linked: 26
- [1]Fuller MT Cold Spring Harbor Laboratory Press 1 71 1993
- [2]White-Cooper H Caporilli S Advances in experimental medicine and biology 786 47 2013 23696351
- [3]Beall EL Genes & development 21 904 4 15 2007 17403774 PMC1847709
- [4]Hiller MA Lin TY Wood C Fuller MT Genes & development 15 1021 4 15 2001 11316795 PMC312677
- [5]White-Cooper H Leroy D MacQueen A Fuller MT Development (Cambridge, England) 127 5463 12 2000 11076766
- [6]Chintapalli VR Wang J Dow JA Nature genetics 39 715 6 2007 17534367
- [7]Gonczy P Matunis E DiNardo S Development (Cambridge, England) 124 4361 11 1997 9334284
- [8]McKearin DM Spradling AC Genes & development 4 2242 12 1990 2279698
- [9]Baker CC Gim BS Fuller MT Development (Cambridge, England) 142 3394 10 1 2015 PMC4631753 26443637
- [10]Adryan B Teichmann SA Bioinformatics (Oxford, England) 22 1532 6 15 2006 16613907
- [11]Perezgasga L Development (Cambridge, England) 131 1691 4 2004 15084455
- [12]Insco ML Leon A Tam CH McKearin DM Fuller MT Proceedings of the National Academy of Sciences of the United States of America 106 22311 12 29 2009 20018708 PMC2799733
- [13]Doe CQ Chu-LaGraff Q Wright DM Scott MP Cell 65 451 5 3 1991 1673362
- [14]Mathieu EL Nucleic Acids Res 40 4879 6 2012 22362736 PMC3367206
- [15]de Dieuleveult M Nature 530 113 2 4 2016 26814966 PMC4871117
- [17]Gomez-Del Arco P Cell Metab 23 881 5 10 2016 27166947
- [18]O’Shaughnessy-Kirwan A Signolet J Costello I Gharbi S Hendrich B Development (Cambridge, England) 142 2586 8 1 2015 PMC4529036 26116663
- [19]Gelbart ME Bachman N Delrow J Boeke JD Tsukiyama T Genes & development 19 942 4 15 2005 15833917 PMC1080133
- [20]Grontved L Nat Commun 6 7048 2015 25916672 PMC6309829
- [21]Georgopoulos K Nat Rev Immunol 2 162 3 2002 11913067
- [22]Mullighan CG N Engl J Med 360 470 1 29 2009 19129520 PMC2674612
- [23]Winandy S Wu P Georgopoulos K Cell 83 289 10 20 1995 7585946
- [24]Schwickert TA Nat Immunol 15 283 3 2014 24509509 PMC5790181
- [25]Gomez-del Arco P Immunity 33 685 11 24 2010 21093322 PMC3072037
- [26]Chen X Lu C Morillo Prado JR Eun SH Fuller MT Development (Cambridge, England) 138 2441 6 2011 PMC3100706 21610025
- [27]Celniker SE Nature 459 927 6 18 2009 19536255 PMC2843545
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Ermolaeva, M., Neri, F., Ori, A., & Rudolph, K. L. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-018-0020-3 · Cited by 272 · see citing works
Canalizing cell fate by transcriptional repression
Lim, B., Domsch, K., Mall, M., & Lohmann, I. (2024) · Molecular Systems Biology · doi:10.1038/s44320-024-00014-z · Cited by 19 · see citing works
Lim, B., Kamal, A., Gomez Ramos, B., Adrian Segarra, J. M., Ibarra, I. L., Dignas, L., Kindinger, T., Volz, K., Rahbari, M., Rahbari, N., et al. (2025) · Nature Genetics · doi:10.1038/s41588-025-02081-w · Cited by 17 · see citing works
- Authors
- Kim, J., Lu, C., Srinivasan, S., Awe, S., Brehm, A., & Fuller, M. T.
- Affiliations
- Stanford Medicine (US)
- Philipps University of Marburg (DE)
- Corresponding author
- Lu, Chenggang
- Srinivasan, Shrividhya
- Fuller, Margaret T.
- Venue
- Science
- Published
- 2017-05-19
- Volume
- 356
- Issue
- 6339
- Pages
- 717-721
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC5572561
- OpenAlex
- W2616432106
- Cited by
- 39
- References
- 2
- Citations by year
- 2026: 5 · 2025: 5 · 2024: 6 · 2023: 5 · 2022: 3 · 2021: 2 · 2020: 1 · 2019: 4 · 2018: 8
- FWCI
- 1.45
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute of General Medical Sciences (award300489, 5R01GM061986)
- Deutsche Forschungsgemeinschaft (award310176, TRR81)
- Reed-Hodgson Professorship in Human Biology (award300877)
- Stanford Graduate Fellowship (award300878)
- Bio-X Stanford Interdisciplinary Graduate Fellowship (award300879)
- Kempkes Stiftung (award310236)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Reproductive Medicine › Sperm and Testicular Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- cryptic promoter, transcriptional repression, cell type-specific gene expression, Aly, spermatocyte differentiation, male germline stem cells, zinc finger proteins, terminal differentiation
- MeSH terms
- Adenosine Triphosphatases, Animals, Autoantigens, Cell Differentiation, Chromatin, Drosophila melanogaster, Female, Gene Expression Regulation, Male, Organ Specificity, Promoter Regions, Genetic, RNA, Messenger, Spermatocytes, Stem Cells, Testis, Cell Cycle Proteins, Cell Lineage, Drosophila Proteins
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