Integrating gene annotation with orthology inference at scale

Cited by (208)

Items 101–200 of 208

1. Aplf/Dna2 variants drive chromosomal fission and accelerate speciation in zokors
   Na Wan, Qijiao Duan, Zhenyuan Cai, Zhanwu Zhu, Jing-Ou Wang, Yonghui Tian, Wei Shen, Bowen Li, Zhuoran Kuang, Xiaolong Liang et al. · 2025 · Science Advances
2. DupyliCate: mining, classifying, and characterizing gene duplications
   Shakunthala Natarajan, Boas Pucker · 2026 · Scientific Reports
3. Life Cycle Simplifications in Aphids Drive Changes in Evolutionary Rates and Selection Regimes
   Théo Vericel, Gaorui Gong, Fabrice Legeai, Aurelie Etier, Julie Jaquiéry, Jean‐Christophe Simon · 2025 · Molecular Biology and Evolution
4. Comparative population genomics reveals convergent adaptation across independent origins of avian obligate brood parasitism
   Ekaterina Osipova, Christopher N. Balakrishnan, Claire N. Spottiswoode, Jess Lund, Jeffrey M. DaCosta, Márk E. Hauber, Wesley C. Warren, Michael D. Sorenson, Timothy B. Sackton · 2025 · Nature Ecology & Evolution
5. Lassa virus circumvents macrophage and dendritic cell antiviral defences in its natural reservoir, the Natal multimammate mouse (Mastomys natalensis)
   Nicolás Corrales, David M. Wozniak, Ivet A. Yordanova, Ellen L. Suder, Ariadna E. Morales, Angelika Lander, Katharina Hansen-Kant, Michael Hiller, Joseph B. Prescott · 2026 · npj Viruses
6. Advances in genomics-driven genetic decoding and genomic design breeding in tomato
   Zihui Ding, Zhangjun Fei, Sanwen Huang, Y N Wu · 2026 · Horticulture Research
7. Elevated retrocopy burden and sloth-specific expansions illuminate mammalian genome evolution
   Marcela Uliano‐Silva, Helena B. Conceição, Rafael L. V. Mercuri, Sylke Winkler, Gabriela D. A. Guardia, Eugene W. Myers, Shane McCarthy, Alan Tracey, Alexander Suh, Mark Blaxter et al. · 2026 · BMC Biology
8. Adaptation across an extreme elevational gradient in Andean leaf-eared mice, the world’s highest-dwelling mammal
   Schuyler W. Liphardt, Naim M. Bautista, Marcial Quiroga‐Carmona, Nathanael D. Herrera, Moritz Blumer, Juan C. Opazo, Federico G. Hoffmann, Ranim Saleem, Derek A. Somo, Francisco del Basto et al. · 2026 · Science
9. Reference genomes and fossils revise bat family phylogeny and biogeography
   Ariadna E. Morales, Yan Liang, William R. Thomas, Evgeny V. Leushkin, Francisco X. Castellanos, Denis M. Larkin, Tom Brown, Bastian Fromm, Suzanne J. Hand, Zixia Huang et al. · 2026 · Nature
10. Gene expression differences associated with intrinsic hindfoot muscle loss in the jerboa, Jaculus jaculus
    Mai P. Tran, Daniel Ochoa Reyes, Alexander J. Weitzel, Aditya Saxena, Michael Hiller, Kimberly L. Cooper · 2024 · Journal of Experimental Zoology Part B Molecular and Developmental Evolution
11. Evolutionary diversity of CXCL16-CXCR6: Convergent substitutions and recurrent gene loss in sauropsids
    Buddhabhushan Girish Salve, Sandhya Sharma, Nagarjun Vijay · 2024 · Immunogenetics
12. Sexual Size Dimorphism Correlates With the Number of Androgen Response Elements in Mammals, But Only in Small-Bodied Species
    Caleb R. Ghione, Matthew D. Dean · 2025 · Genome Biology and Evolution
13. Myo-inositol is a key regulator of avian metabolism: From mechanisms to seasonal behavior
    Adi Domer, Tyler R. Misraje, Dianna Xing, B. Gabriela Arango, Giovanna Selleghin-Veiga, Ammon B. Corl, Rauri C. K. Bowie, Jimmy A. McGuire, Karen L. Sweazea, José Pablo Vázquez‐Medina et al. · 2025 · Science Advances
14. Genomic Signatures in Maned Three‐Toed Sloths From Ancient to Recent Environmental Changes in Brazil's Threatened Atlantic Forest
    Larissa Souza Arantes, Diego N. De Panis, Flávia Regina Miranda, Fabrício Rodrigues dos Santos, Michael Hiller, Camila Junqueira Mazzoni · 2025 · Molecular Ecology
15. Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
    Jie Lin, Yujian Wen, Ji Tang, Xuecong Zhang, Huanlin Zhang, Hao Zhu · 2026 · eLife
16. Different orthology inference algorithms generate similar predicted orthogroups among Brassicaceae species
    Irene T. Liao, Karen E. Sears, Lena C. Hileman, Lachezar A. Nikolov · 2024 · Applications in Plant Sciences
17. Chromosome level genome assembly of the Etruscan shrew Suncus etruscus
    Yury V. Bukhman, SUSANNE R. MEYER, Li‐Fang Chu, Linelle Ann L. Abueg, Jessica Antosiewicz‐Bourget, Jennifer Balacco, Michael Brecht, Erica Dinatale, Olivier D. Fedrigo, Giulio Formenti et al. · 2024 · Scientific Data
18. Pervasive loss of regulated necrotic cell death genes in elephants, hyraxes, and sea cows ( Paenungualta )
    Meaghan Birkemeier, Arianna Swindle, Jacob D. Bowman, Vincent J. Lynch · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
19. A chromosome-level genome assembly of an avivorous bat species (Nyctalus aviator)
    Geng Yang, Yingying Liu, Yu Zhang, Lixin Gong, Yu Han, Zhenglanyi Huang, Can Ke, Hui Wu, Aiqing Lin, Jiang Feng et al. · 2024 · Scientific Data
20. Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene program in bat wing development
    Magdalena Schindler, Christian Feregrino, Silvia Aldrovandi, Bai-Wei Lo, Anna A. Monaco, Alessa R. Ringel, Ariadna E. Morales, Tobias Zehnder, Rose Yinghan Behncke, Juliane Glaser et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
21. Flexibility of cell fates and functions across sex determination systems revealed by comparative single-cell analyses
    Rafael D. Acemel, Boris M. Tezak, Virginia Chung, Alicia Hurtado, Scarlett Albertson, Ceri J. Weber, Blanche Capel, Darío G. Lupiáñez · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
22. Genomic signatures associated with recurrent scale loss in cyprinid fish
    Yongli Ding, Ming Zou, Baocheng Guo · 2024 · Integrative Zoology
23. Challenges in Assembling the Dated Tree of Life
    Carlos Guerra Schrago, Beatriz Mello · 2024 · Genome Biology and Evolution
24. Symbiosis with and mimicry of corals were facilitated by immune gene loss and body remodeling in the pygmy seahorse
    Meng Qu, Yingyi Zhang, Joost M. Woltering, Yali Liu, Zixuan Liu, Shi‐Ming Wan, Han Jiang, Haiyan Yu, Zelin Chen, Xin Wang et al. · 2025 · Proceedings of the National Academy of Sciences
25. Peptide Mass Fingerprinting of South American Xenarthrans: A New Resource for Zooarcheology and Palaeontology
    Mariya Antonosyan, Roshan Paladugu, Michael J. Ziegler, Gabriela Prestes-Carneiro, Eliane Nunes Chim, André Menezes Strauss, Diego Mendes, Rafael Lemos, Jorge D. Carrillo-Briceño, Laura Pereira Furquim et al. · 2025 · Journal of Proteome Research
26. Neo-sex Chromosomes Track the Mitochondrial Phylogeny and Exhibit an Extensive Added Stratum of Recombination Suppression in Honeyeaters (Aves: Meliphagidae)
    Sophia Catherine Orzechowski, Doaa Doudin, Foyez Shams, C Jonathan Schmitt, Alex Drew, Chris Wilson, Leo Joseph, Tariq Ezaz, Scott V. Edwards · 2025 · Genome Biology and Evolution
27. PseudoChecker2 and PseudoViz: automation and visualization of gene loss in the Genome Era
    Rui Resende Pinto, Raquel Ruivo, Josefin Stiller, Rute R. da Fonseca, L. Filipe C. Castro · 2024 · Bioinformatics Advances
28. Tutorial: annotation of animal genomes
    Zoe A. Clarke, Dustin Sokolowski, Ciaran Byles-Ho, Ruth Isserlin, Michael D. Wilson, Jared T. Simpson, Gary D. Bader · 2026 · Nature Protocols
29. Efficient identification of phylogenetically informative alignment sites via sparse learning
    Carlos Guerra Schrago · 2026 · Molecular Phylogenetics and Evolution
30. Extraordinary diversity of antiviral immune-related gene families across 38 bat species
    Guangshuai Liu, Yingying Ren, Shengyang Zhou, Qinyang Hua, Peng Chen, Honghai Zhang, Zhen Liu · 2026 · BMC Biology
31. Learning genes deeply
    Michael Hiller · 2026 · Nature Methods
32. Stepwise emergence of recombination suppression precedes fissiparous asexuality in the planarian Schmidtea mediterranea
    Jeremias N. Brand, Ajinkya Bharatraj Patil, Luca Pandolfini, Kira S. Zadesenets, Н. Б. Рубцов, Laura Ávila Robledillo, Meng Zhang, André Marques, Jochen Christian Rink · 2026 · Nature Communications
33. Understanding and modeling human traits and diseases: Insights from the comparative genomics resources of Zoonomia
    Maosen Ye, Dengfeng Zhang · 2023 · The Innovation
34. Genetic landscape in undiagnosed patients with syndromic hearing loss revealed by whole exome sequencing and phenotype similarity search
    Hideki Mutai, Fuyuki Miya, Kiyomitsu Nara, Nobuko Yamamoto, Satomi Inoue, Haruka Murakami, Kazunori Namba, Hiroshi Shitara, Shujiro Minami, Atsuko Nakano et al. · 2025 · Human Genetics
35. Genomic insights into marine environment adaptation and conservation of the threatened olive ridley turtle (Lepidochelys olivacea)
    Lin Yang, Yiting Chen, Shaofeng Wang, Chenglong Zhang, Xin Sunny Huang, Xin Du, Wenliang Zhou, Fuwen Wei · 2025 · iScience
36. Chromosome‐Scale Genome Assembly Provides Insights Into Condor Evolution and Conservation
    Diego N. De Panis, François Le Dily, Sergio Agustin Lambertucci, Guillermo María Wiemeyer, Hernán Dopazo, Marta Ortova Gut, Tyler Alioto, Camila Junqueira Mazzoni, Ivo Gut, Marc A. Martı́-Renom et al. · 2025 · Molecular Ecology Resources
37. INSIG1 parallel substitution drives lipid/sterol metabolic plasticity mediating desert adaptation in ungulates
    Li, Xinmei, He, Ziyi, Liu, Anguo, Meng, Fanxin, Zhang, Xiao, Li, Nana, Liu, Huan, Lu, Yuyi, Wu, Zhipei, Fan, Huimei et al. · 2026 · Communications Biology
38. Interactive visualization of whole eukaryote genome alignments using NCBI’s Comparative Genome Viewer (CGV)
    Sanjida H Rangwala, Dmitry Rudnev, Victor Ananiev, Andrea Asztalos, Barrett Benica, Evgeny A. Borodin, Nathan Bouk, Vladislav I. Evgeniev, Vamsi K. Kodali, Vadim Lotov et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
39. Convergent relaxation of molecular constraint in mammalian herbivores highlights the roles of liver and kidney functions in carnivory
    Matthew D. Pollard, Wynn K. Meyer, Emily E. Puckett · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
40. Chromosome-level genome assembly of the big-footed bat (Myotis pilosus)
    Shilin Tian, Libiao Zhang, Huabin Zhao · 2025 · Research Square
41. Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
    Jian Lin, Yujian Wen, Ji Tang, Xuecong Zhang, Huanlin Zhang, Hao Zhu · 2026 · eLife
42. Heterochrony of axis segmentation underlies extreme morphogenesis in the Japanese eel
    Ali Seleit, Kazuharu Nomura, Leon Hilgers, Michael Hiller, Kiyoshi Naruse, Yukinori Kazeto, Alexander Aulehla · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
43. Gencube: Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
    Keun Hong Son, Je‐Yoel Cho · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
44. Sexual size dimorphism correlates with the number of androgen response in mammals, but only in small-bodied species
    Caleb R. Ghione, Matthew D. Dean · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
45. Unprecedented female mutation bias in aye-ayes
    Richard J. Wang, Yadira Peña-García, Muthuswamy Raveendran, Ronald Alan Harris, T.H.D. Nguyen, Marie‐Claude Gingras, Yifan Wu, Lesette M. Perez, Anne D. Yoder, Joe H. Simmons et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
46. Extensive sequence analysis: revealing genomic knowledge throughout various domains
    Abdul Razak Mohamed Sikkander, Suman Lata Tripathi, G. Theivanathan · 2025 · Elsevier eBooks
47. Back to basics: Immunoglobulin germline reference sequences enable investigations and reveal insights into bat-specific immunity
    Ashley B. Reers, Shijun Zhan, Taylor A. Pursell, Clara Reasoner, Natasha F. Hodges, Tanya M. Lama, Tony Schountz, Hannah K. Frank · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
48. Gencube: centralized retrieval and integration of multi-omics resources from leading databases
    Keun Hong Son, Je‐Yoel Cho · 2025 · Bioinformatics
49. Loss of the cytosolic DNA-sensing genes CGAS and STING1 in armadillos (Cingulata)
    Lillie Schaffer, Amanda Ivanoff, Frédéric Delsuc, Vincent J. Lynch · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
50. Insect Phylogenomics: From Experiment Planning to Post-phylogenetic Analyses
    Giobbe Forni, Andrea Luchetti, Omar Rota‐Stabelli · 2025 · Methods in molecular biology
51. A phylogenetic protein-coding genome-phenome map of complex traits across 224 primate species
    Alejandro Valenzuela, Fabio Barteri, Claudia Vasallo, Joseph Daniel Orkin, Lukas F. K. Kuderna, Jean P. Boubli, Amanda Dawn Melin, Hafid Laayouni, Kyle Kai‐How Farh, Jeffrey Rogers et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
52. Gene Loss DB: a curated database for gene loss in mammals—the cetacean collection
    Gonçalo Espregueira Themudo, Raquel Ruivo, Raúl Valente, Nadia Artilheiro Artilheiro, Diogo Oliveira, Inês Amorim, Bernardo Pinto, L. Filipe C. Castro, Sergio Fernandes, Mónica Lopes‐Marques · 2025 · Database
53. Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
    Jie Lin, Yujian Wen, Ji Tang, Xuecong Zhang, Huanlin Zhang, Hao Zhu · 2025 · eLife
54. Genomic signatures of subterranean lifestyle and ecological adaptation in Myospalax
    Na Wan, Jiaqi Chen, Muli Jiang, Mengzhuo Wu, Haolin Li, Mozhi Wen, Wei Shen, Xiaolong Liang, Xiaojie Yang, Yijing Liu et al. · 2025 · BMC Biology
55. WITHDRAWN: Mammalian longevity is associated with restricted epithelial plasticity
    Zhizhong Zheng · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
56. Chromosome-level genome assembly of the common tenrec, Tenrec ecaudatus (Schreber, 1778), a new model for early placental mammal evolution
    Damián Hernández-Roco, Evgeny V. Leushkin, Jaccqueline Galeas, Katharine R. Grabek, Carlos Lopez, Gilbecca Rae Smith, Daniel J Stadtmauer, Günter P. Wagner, Frank van Breukelen, Michael Hiller et al. · 2026 · BMC Genomics
57. Towards a phylogenetically informed approach to solving protein–protein interactions
    Chun Shen Lim, Peter D. Mace, Peter C. Fineran, Paul P. Gardner · 2025 · Biochemical Society Transactions
58. Deciphering APOBEC1 in Avians: Unravelling loss events and functional insights
    Aswin S Soman, Nagarjun Vijay · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
59. Parallel Selection for Longevity in Mammals and Birds
    William B. Zhang, Marcus R. Kronforst · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
60. Additional file 1 of GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
    Bruno Contreras‐Moreira, Shradha Saraf, Guy Naamati, Casas, Ana M., Sandeep Amberkar, Flicek, Paul, Andrew R. Jones, Sarah C. Dyer · 2023 · Figshare
61. Additional file 2 of GenArk: towards a million UCSC genome browsers
    Hiram Clawson, Brian T. Lee, Brian J. Raney, Galt P Barber, Jonathan D. Casper, Mark Diekhans, Clay Fischer, Gonzalez, Jairo Navarro, Angie S. Hinrichs, Christopher M. Lee et al. · 2024 · Figshare
62. Additional file 2 of GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
    Bruno Contreras‐Moreira, Shradha Saraf, Guy Naamati, Casas, Ana M., Sandeep Amberkar, Flicek, Paul, Andrew R. Jones, Sarah C. Dyer · 2024 · Figshare
63. Additional file 1 of GenArk: towards a million UCSC genome browsers
    Hiram Clawson, Brian T. Lee, Brian J. Raney, Galt P Barber, Jonathan D. Casper, Mark Diekhans, Clay Fischer, Gonzalez, Jairo Navarro, Angie S. Hinrichs, Christopher M. Lee et al. · 2024 · Figshare
64. Additional file 1 of Contrasting new and available reference genomes to highlight uncertainties in assemblies and areas for future improvement: an example with monodontid species
    Trevor T. Bringloe, Geneviève J. Parent · 2023 · Figshare
65. Pygmy sperm whale multi-omics data reveal hypoxia adaptations in deep-diving cetaceans
    Weijian Guo, Yiting Chen, Huizhong Fan, Xin Huang, Xi Chen, Yousheng Xiao, Chaoming Zhang, Wenliang Zhou, Fuwen Wei · 2025 · BMC Biology
66. Diet-Related Molecular Evolution Differs among Vertivores, Invertivores, and Combined Carnivores
    Michael Tene, Alexander W. Seaver, Kathleen Foley, Wynn K. Meyer · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
67. A Chromosome-Level Genome Assembly and Resequencing Data Reveal Low DNA Methylation and Reduced Diversity in the Solitary Bee Pollinator Osmia cornuta
    Jannik S. Möllmann, Xuejing Hu, Eva A Baumgarten, Anne Hartleib, Katja Nowick, Thomas J. Colgan, Eckart Stolle · 2026 · Genome Biology and Evolution
68. Assessment of phylogenetic informativeness in mitochondrial and nuclear genes for mammalian systematics using sparse learning
    Carlos Guerra Schrago, Beatriz Mello · 2026 · Frontiers in Bioinformatics
69. Targeted ortholog search in unannotated genome assemblies with fDOG-Assembly
    Hannah Muelbaier, Freya Arthen, Vinh V. Tran, Ina Schaefer, Miklós Bálint, Ingo Ebersberger · 2026 · Nucleic Acids Research
70. Comprehensive cytogenetic analysis of the aardwolf ( Proteles cristatus ) and comparative chromosome painting with the domestic cat ( Felis catus )
    Ellie Kolb, Mayra N. Mendoza, Brian W Davis, Roscoe Stanyon, Terje Raudsepp · 2026 · Journal of Heredity
71. DrosGB: An integrated multi-omics database for comparative genomics and functional annotation of 35 Drosophila species
    Qi Zheng, Chuanchang Zhang, Junhui Zhang, Haitian Hao, Xue Wu, Hua Cai, Runxi Shen, Quan Zheng, Xiangrui Cai, Mo Liu · 2026 · hLife
72. Tracing the expansion of p53 retrogenes in elephant species: A foundation for functional insights
    Konstantinos Karakostis, Elena Campoy, Marta Puig, Robin Fåhræus, Fritz W. Vollrath, Mario Cáceres · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
73. SplitAligner: A Gene-Species Tree Reconciliation Framework Using Split-Based Branch Mapping
    J. Wu · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
74. Mammalian evolution and human mutation burden in Rab GTPases
    Unmani Sidor, Graham M. Hughes, Jeremy Simpson · 2026 · Biochemistry and Biophysics Reports
75. The Road so Far: Tracing the Molecular Evolution of Hexokinase Family in Metazoa
    Douglas Jardim Messeder, Ygor de Souza-Vieira, Guilherme A P Oliveira, Rogério Margis, Beatriz Mello, Gilberto Sachetto‐Martins · 2026 · Genome Biology and Evolution
76. Impaired non-shivering thermogenesis in the desert-dwelling antelope ground squirrel
    Luke Olsen, Michele Albertini, Douglas Barrows, Thomas S. Carroll, Michael Hiller, Roberto Refinetti, G. J. Kenagy, Paul Cohen · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
77. Evolutionary Complexity of Primate Immune System Uncovered by the Extensive Phylogenomic Sampling
    Xiuping Zhang, B. Wu, Yong Shao · 2026 · Genome Biology and Evolution
78. Chromosomal Fusions Promote Speciation in Subterranean Blind Mole Rats
    Zhuoran Kuang, Xiaojie Yang, Zachariah Gompert, Qijiao Duan, Wenyu Liu, Sanyuan Liu, Jiaqi Chen, Xiaolong Liang, Leyan Mao, Na Wan et al. · 2026 · Molecular Ecology
79. New approaches to discovering epigenetic rules of homeostasis in diverse mammal species
    Jorge Alejandro González, Diane P. Genereux, Kristin N. Crouse, Bradley Frishman, Allyson G. Hindle, Elinor K. Karlsson, Carla Bonetti Madelaire, Lucas Moreira, Valery E. Forbes · 2026 · BMC Genomics
80. Accurate ab initio gene prediction in eukaryotes with Tiberius in multiple clades
    Lars Gabriel, Tomáš Brůna, Asees Kaur, Anish Krishnan, Felix Ortmann, Asaf A. Salamov, Samuel Talbot, Felix Becker, Richard Krieg, Christopher West Wheat et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
81. The genomic basis of independent marine transitions in turtles: convergent episodic adaptation and demographic shifts
    Elisa K. S. Ramos, Leon Hilgers, Tomás Carrasco-Valenzuela, Diego N. De Panis, Agnello Picorelli, James Kieran Sullivan, Marcela Uliano‐Silva, Blair P. Bentley, Peter A. Scott, Michael Hiller et al. · 2026 · Molecular Biology and Evolution
82. Balancing Selection on a Single Locus Controls Colour Polymorphism in a Reptile via Tubulin Modification
    Hong‐Xin Xie, Danyang Wu, Guannan Wen, Xixi Liang, Shuyi Luo, Chunsheng Yang, Kathryn R. Elmer, Weiguo Du · 2026 · Molecular Ecology
83. Evolutionary history and genomic vulnerability of the extinct giant deer Megaloceros giganteus
    Mikkel‐Holger S. Sinding, Marco Gargano, Zihe Li, Emiliano Trucchi, Patrick Arnold, Kevin G. Daly, Valeria Mattiangeli, Sergei F. Kliver, David A. Duchêne, Daniel Wegmann et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
84. The Paipu framework enables creation of a large-scale mammalian cancer transcriptomics atlas
    Bria Synae Smith, Leslie Arthur Smith, Ji‐Hyun Lee, James A. Cahill, Kiley S. Graim · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
85. Identification of a large class of cancer–germline microproteins as a source of immunotherapeutic targets
    Marta E. Camarena, Covadonga Vara, Chris Papadopoulos, José Carlos Montañés, Sara Razquin-Sola, Marie Taillandier-Coindard, HuiSong Pak, Markus Müller, Nafiseh Khelgati, Juan Carlos García-Soriano et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
86. Whole-genome phylogenomics and synteny resolve a single origin of body-plan asymmetry in flatfishes
    Julian Gallego-Garcia, Delson Hays, Pakorn Tongboonkua, Jeremiah J. Minich, Leon Hilgers, Todd P. Michael, Michael Hiller, Chao Zhang, Guillermo Ortı́, Dahiana Arcila et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
87. ESL-PSC Toolkit: a graphical software environment for linking shared genetic changes to convergent phenotypes
    John B. Allard, Sudhir Kumar · 2026 · Molecular Biology and Evolution
88. Explaining the rapid evolution of mammalian meiotic recombination proteins
    Julien Joseph, Paola Montoya, Frédéric Baudat, Aurora Ruiz‐Herrera, Julien Clavel · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
89. Unravelling Extended Longevity Mechanism in Bats: Insights From Life‐History Traits and Comparative Genomics
    Kening Cui, Dengfeng Guan, Xin Huang, Xin Du, Jiang Zhou, Guangping Huang, Fuwen Wei · 2026 · Molecular Ecology
90. Deciphering APOBEC1 in Avians: unravelling loss events and functional insights
    Aswin S Soman, Nagarjun Vijay · 2026 · Immunogenetics
91. Genome Mining Approaches for Toxicant Discovery: A Case Study Examining Receptor Proteins for Pest Management in New Zealand
    Erica R. Hendrikse, Natalie J. Forsdick, Wanting Jiao, Brian Hopkins · 2026 · New Zealand Journal of Zoology
92. Disruption of a CCR5-like immunoglobulin gene is linked to plague susceptibility in black-footed ferrets
    Yana Safonova, Taylor A. Pursell, Caleb S. Whitley, Katelyn R. Sheneman, Anna Mikhailova, Vinamratha Pattar, Mariia Pospelova, Adonis A. Rubio, Katalin Voss, Jordan M. Welker et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
93. Advancing FAIR phylogenetics for health threats: a systematic review of SARS ‐ CoV ‐2 research and guidelines for future outbreaks
    Omkar Marne, Denis Jacob Machado · 2026 · Cladistics
94. OrthoGLMM: Phylogenetic Association Testing for Gene Content and Trait Evolution
    Joseph G. Guhlin, Phoebe Keddell, Peter K. Dearden · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
95. Comparative Genomics Reveals Convergent Evolution Between Avivorous Bats ( Ia io and Nyctalus aviator )
    Yang Geng, Yingying Liu, Lixin Gong, Zhenglanyi Huang, Aiqing Lin, Jiang Feng, Yu Zhang, Tinglei Jiang · 2026 · Integrative Zoology
96. Genetic evidence supports that thalidomide should not be used therapeutically in dogs
    Maja L. Arendt, Jennifer R. S. Meadows · 2026 · Veterinary oncology.
97. Emergence and divergence of blood cell lineages in the history of animal evolution
    Yosuke Nagahata, Hiroshi Kawamoto · 2026 · International Immunology
98. A T2T Genome of the Lobed-Lip Iguazu Joana ( Crenicichla tuca ) Reveals Intrachromosomal Rearrangements and Trans-species Polymorphism in Cichlid Fishes
    Mylena Daiana Santander, Henrique Rosa Varella, Diego Baldo, Frederico Henning · 2026 · Genome Biology and Evolution
99. Transforming Life Science Through Chromosome‐Level Genome Assemblies
    Tetsuo Kon, Kosuke Kataoka, Yi‐Jyun Luo, Johannes Nicolaus Wibisana, Kouhei Toga, Narumi Uno, Yuki Monden, Mayuko Hamada · 2026 · Genes to Cells
100. Lack of Evidence for Gene-Level Convergence Linked to Evolutionary Shifts in Torpor Among Placental Mammals
     Dimitrios ‐ Georgios Kontopoulos, Alexis-Walid Ahmed, Bernhard Bein, Danielle L. Levesque, Michael Hiller · 2026 · Genome Biology and Evolution