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ApoE isoform– and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy
Open accessAbstract
Tau-mediated neurodegeneration is a hallmark of Alzheimer’s disease. Primary tauopathies are characterized by pathological tau accumulation and neuronal and synaptic loss. Apolipoprotein E (ApoE)–mediated neuroinflammation is involved in the progression of tau-mediated neurodegeneration, and emerging evidence suggests that the gut microbiota regulates neuroinflammation in an APOE genotype–dependent manner. However, evidence of a causal link between the microbiota and tau-mediated neurodegeneration is lacking. In this study, we characterized a genetically engineered mouse model of tauopathy expressing human ApoE isoforms reared under germ-free conditions or after perturbation of their gut microbiota with antibiotics. Both of these manipulations reduced gliosis, tau pathology, and neurodegeneration in a sex- and ApoE isoform–dependent manner. The findings reveal mechanistic and translationally relevant interrelationships between the microbiota, neuroinflammation, and tau-mediated neurodegeneration.
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“Moreover, studies on animal models have provided compelling evidence that the altered gut microbiome drives neurodegenerative disease pathogenesis, primarily through the modulation of microglial functions and activation.54–57”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“Interestingly, they observed sex-dependent and APOE isoform-dependent neuroprotection as the neuroprotective effects of antibiotic treatment were more pronounced in male mice expressing human APOE3 (TE3 mice).56”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“However, the neuroprotective effects of gut microbiota depletion were diminished following microbiota restoration and SCFA supplementation.”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“Gut microbiota perturbation has also been shown to reduce reactive astrogliosis, promote a shift in astrocytes towards a more homeostatic-like state, and protect against amyloidosis and tau-mediated neurodegeneration.”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“In particular, FMT from age-matched control mice restored astrogliosis in antibiotic-treated APP/PS1-21 mice, while SCFAs supplementation restored the gliosis and tau pathology in GF TE4 mice.56,61”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“Interestingly, these effects appear to be more prominent in male mice.56,61”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“A recent study demonstrated that SCFA supplementation in GF TE4 mice mitigated the neuroprotective effects of GF rearing, resulting in increased gliosis and tau pathology.”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“Conversely, the depletion of SCFAs-producing bacteria using antibiotic treatment conferred protection against tau-mediated neurodegeneration and neuroinflammation in TE3 mice.56”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
In the citing paper
“Moreover, the majority of studies that reported the detrimental effects of SCFAs were conducted using GF mice,56,190,196,199 which are functionally and structurally abnormal across various physiological functions.313”
From Microbiota–gut–brain axis and its therapeutic applications in neurodegenerative diseases (2024) · cites this paper as [56]
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Love, M. I., Huber, W., & Anders, S. (2014) · Genome Biology · doi:10.1186/s13059-014-0550-8 · Cited by 95,106
Robinson, M. D., McCarthy, D. J., & Smyth, G. K. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp616 · Cited by 41,364
limma powers differential expression analyses for RNA-sequencing and microarray studies
Ritchie, M. E., Phipson, B., Wu, D., Hu, Y., Law, C. W., Shi, W., & Smyth, G. K. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv007 · Cited by 40,458
DADA2: High–resolution sample inference from Illumina amplicon data
Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., & Holmes, S. P. (2016) · Nature Methods · doi:10.1038/nmeth.3869 · Cited by 35,698
WGCNA: an R package for weighted correlation network analysis
Langfelder, P., & Horvath, S. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-559 · Cited by 27,252
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
McMurdie, P. J., & Holmes, S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0061217 · Cited by 21,942
Comprehensive Integration of Single-Cell Data
Stuart, T., Butler, A., Hoffman, P., Hafemeister, C., Papalexi, E., Mauck, W. M., Hao, Y., Stoeckius, M., Smibert, P., & Satija, R. (2019) · Cell · doi:10.1016/j.cell.2019.05.031 · Cited by 15,453
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Zhou, Y., Zhou, B., Pache, L., Chang, M., Khodabakhshi, A. H., Tanaseichuk, O., Benner, C., & Chanda, S. K. (2019) · Nature Communications · doi:10.1038/s41467-019-09234-6 · Cited by 14,611
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Butler, A., Hoffman, P., Smibert, P., Papalexi, E., & Satija, R. (2018) · Nature Biotechnology · doi:10.1038/nbt.4096 · Cited by 13,174
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Cole, J. R., Wang, Q., Fish, J. A., Chai, B., McGarrell, D. M., Sun, Y., Brown, C. T., Porras‐Alfaro, A., Kuske, C. R., & Tiedje, J. M. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt1244 · Cited by 4,480
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Kountouras, J., Boziki, M. K., Kazakos, E. I., Theotokis, P., Kesidou, E., Nella, M., Bakirtzis, C., Karafoulidou, E., Vardaka, E., Mouratidou, M. C., et al. (2024) · Neurochemistry International · doi:10.1016/j.neuint.2024.105724 · Cited by 23
Hammond, T. C., Green, S. J., Jacobs, Y., Chlipala, G. E., Xing, X., Heil, S. D., Chen, A., Aware, C. B., Flemister, A., Stromberg, A. J., et al. (2023) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2023.1227203 · Cited by 24
Wang, X., Liu, Y., Kim, S., Zhang, C., Li, Z., Chen, X., Zhu, H., & Qian, Y. (2024) · Chemical Engineering Journal · doi:10.1016/j.cej.2024.153652 · Cited by 21
Miyauchi, E., Yamazaki, K., Tsuboi, Y., Nakajima, T. E., Ono, S., Mizuno, K., Takahashi, N., Imamura, K., Morita, H., Miura, N., et al. (2025) · Journal of Oral Microbiology · doi:10.1080/20002297.2025.2499284 · Cited by 22
Chandra, S., Popović, J., Singhal, N. K., Watkins, E. A., Dodiya, H. B., Weigle, I. Q., Salvo, M. A., Ramakrishnan, A., Chen, Z., Watson, T., et al. (2025) · Journal of Clinical Investigation · doi:10.1172/jci180826 · Cited by 22
Self-citationCirculating short chain fatty acids in Alzheimer's disease: A cross-sectional observational study
Marizzoni, M., Coppola, L., Festari, C., Luongo, D., Salamone, D., Naviglio, D., Soricelli, A., Mirabelli, P., Salvatore, M., Cattaneo, A., et al. (2025) · Journal of Alzheimer s Disease · doi:10.1177/13872877251337773 · Cited by 27
Do microbes play a role in Alzheimer's disease?
Williams, Z. A. P., Láng, L., Nicolas, S., Clarke, G. A., Cryan, J. F., Vauzour, D., & Nolan, Y. M. (2024) · Microbial Biotechnology · doi:10.1111/1751-7915.14462 · Cited by 21
Getting closer to modeling the gut-brain axis using induced pluripotent stem cells
Hall, V. J., & Bendtsen, K. M. (2023) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2023.1146062 · Cited by 21
Association Between Bowel Movement Pattern and Cognitive Function
Ma, C., Li, Y., Mei, Z., Yuan, C., Kang, J. H., Grodstein, F., Ascherio, A., Willett, W. C., Chan, A. T., Huttenhower, C., et al. (2023) · Neurology · doi:10.1212/wnl.0000000000207849 · Cited by 25
Self-citationUpdate on modifiable risk factors for Alzheimer's disease and related dementias
Jaisa-aad, M., Muñoz‐Castro, C., & Serrano‐Pozo, A. (2024) · Current Opinion in Neurology · doi:10.1097/wco.0000000000001243 · Cited by 21
Liang, Z., Gong, X., Zhao, Y., Zhao, Y., Yu, J., Huang, T., Yang, C., Wu, L., Huang, M., Wang, X., et al. (2024) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202300669 · Cited by 22
Gut microbiota metabolites: potential therapeutic targets for Alzheimer’s disease?
Zhang, S., Lu, J., Jin, Z., Xu, H., Zhang, D., Chen, J., & Wang, J. (2024) · Frontiers in Pharmacology · doi:10.3389/fphar.2024.1459655 · Cited by 25
Gao, Y., Wang, K., Lin, Z., Cai, S., Peng, A., He, L., Qi, H., Jin, Z., & Qian, X. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1434687 · Cited by 23
Chevalier, C., Tournier, B. B., Marizzoni, M., Park, R., Paquis, A., Ceyzériat, K., Badina, A. M., Lathuilière, A., Saleri, S., Cillis, F. D., et al. (2025) · Genes Brain & Behavior · doi:10.1111/gbb.70012 · Cited by 19
Murai, T., & Matsuda, S. (2023) · Life · doi:10.3390/life13071466 · Cited by 20
New insights into innate immunity in Alzheimer’s disease: From APOE protective variants to therapies
Chen, Y., & Holtzman, D. M. (2024) · Trends in Immunology · doi:10.1016/j.it.2024.08.001 · Cited by 19
Self-citationFlynn, C. M., Omoluabi, T., Janes, A. M., Rodgers, E. J., Torraville, S. E., Negandhi, B. L., Nobel, T. E., Mayengbam, S., & Yuan, Q. (2025) · Alzheimer s Research & Therapy · doi:10.1186/s13195-025-01674-1 · Cited by 26
Siripaopradit, Y., Chatsirisakul, O., Ariyapaisalkul, T., & Sereemaspun, A. (2024) · BMC Neurology · doi:10.1186/s12883-024-03978-5 · Cited by 27
Sepúlveda‐Rivera, V., Olivieri‐Henry, G., Morales, H., Ruiz‐Adames, J. A., Herrero‐Rivera, C. A., Rentas-Echeverria, A., Cardona-Berdecía, V., Soler‐Llompart, C. M., Sala‐Morales, A. C., Pérez-Montero, G., et al. (2025) · Scientific Reports · doi:10.1038/s41598-025-13262-2 · Cited by 21
Minding the Gap: Exploring Neuroinflammatory and Microglial Sex Differences in Alzheimer’s Disease
Reed-Geaghan, E. G., & Keller-Norrell, P. R. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms242417377 · Cited by 19
Swimming exercise induces redox-lipid crosstalk to ameliorate osteoarthritis progression
Wu, Y., Hou, M., Deng, Y., Xia, X., Liu, Y., Yu, J., Yu, C., Yang, H., Zhang, Y., & Zhu, X. (2025) · Redox Biology · doi:10.1016/j.redox.2025.103535 · Cited by 18
Emerging roles for innate and adaptive immunity in tauopathies
Johnson, A. M., & Lukens, J. R. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116232 · Cited by 19
Jiao, Y., Ren, J., Xie, S., Yuan, N., Shen, J., Yin, H., Wang, J., Guo, H., Cao, J., Wang, X., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2488105 · Cited by 16
Early-life gut microbiome maturity regulates blood–brain barrier and cognitive development
Zemmel, Z. M., Fan, X., Yu, Y., Markiewicz, E. J., Tsai, H., Lu, L., Little, J., Ramaswamy, R., Andrews, B., Claud, E. C., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2551879 · Cited by 19
The Gut-Brain Axis in Alzheimer’s Disease: Exploring Microbial Influences and Therapeutic Strategies
Mustafa, M. A., Vadia, N., Varma, P., Al‐Shaker, H., Mohanty, B., Dhyani, A., Kaur, I., Chauhan, A. S., & Garg, G. (2025) · Molecular Neurobiology · doi:10.1007/s12035-025-05474-4 · Cited by 18
Intestinal Bacteroides drives glioma progression by regulating CD8+ T cell tumor infiltration
Chatterjee, J., Qi, X., Mu, R., Li, X., Eligator, T., Ouyang, M., Bozeman, S. L., Rodgers, R., Aggarwal, S., Campbell, D. E., et al. (2025) · Neuro-Oncology · doi:10.1093/neuonc/noaf024 · Cited by 16
Rakuša, E., Fink, A., Tamgüney, G., Heneka, M. T., & Doblhammer, G. (2023) · Journal of Alzheimer s Disease · doi:10.3233/jad-221153 · Cited by 14
Metadata
- Authors
- Seo, D.-O., O’Donnell, D., Jain, N., Ulrich, J. D., Herz, J., Li, Y., Lemieux, M., Cheng, J., Hu, H., Serrano, J. R., Bao, X., Franke, E., Karlsson, M., Meier, M., Deng, S., Desai, C., Dodiya, H., Lelwala-Guruge, J., Handley, S. A., Kipnis, J., Sisodia, S. S., Gordon, J. I., & Holtzman, D. M.
- Affiliations
- Washington University in St. Louis (US)
- The Edison Family Center for Genome Sciences and Systems Biology and the Center for Gut Microbiome and Nutrition Research, Washington University School of Medicine, St. Louis, MO, USA.
- University of Chicago (US)
- Corresponding author
- Holtzman, David M.
- ORCID
- Venue
- Science
- Published
- 2023-01-13
- Volume
- 379
- Issue
- 6628
- Pages
- eadd1236-eadd1236
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC9901565
- OpenAlex
- W4315928364
- Cited by
- 254
- References
- 43
- Citations by year
- 2026: 41 · 2025: 80 · 2024: 74 · 2023: 59
- FWCI
- 45.23
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Good Ventures Foundation
- National Institutes of Health (NS090934)
- National Institute on Aging (P30AG066444)
- National Institute of General Medical Sciences (T32GM007200)
- National Institute of Diabetes and Digestive and Kidney Diseases (P30DK042086, P30DK056341, R01DK030292)
- National Institute of Neurological Disorders and Stroke (R01NS090934, RF1NS090934)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Alzheimer's disease research and treatments
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- tauopathy, apolipoprotein E isoforms, gut microbiota, neuroinflammation, neurodegeneration, Alzheimer's disease, germ-free mice, antibiotic perturbation, gliosis, sex differences
- MeSH terms
- Gastrointestinal Microbiome, Neuroinflammatory Diseases, Animals, Anti-Bacterial Agents, Apolipoproteins E, Disease Models, Animal, Female, Humans, Male, Mice, Transgenic, Sex Factors, tau Proteins, Tauopathies, Mice
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