The DOI matches its Crossref record; 42 of the 42 references it cites were found in a registry or an index.
The Link between Phylogeny and Virulence in Escherichia coli Extraintestinal Infection
Open accessAbstract
Previous studies suggesting a link between Escherichia coli phylogenetic groups and extraintestinal virulence have been hampered by the difficulty in establishing the intrinsic virulence of a bacterial strain. Indeed, unidentified virulence factors do exist, and the susceptibility of the host to infection is highly variable. To overcome these difficulties, we have developed a mouse model of extraintestinal virulence to test the virulence of the strains under normalized conditions. We then assessed the phylogenetic relationships compared to the E. coli reference (ECOR) collection, the presence of several known virulence determinants, and the lethality to mice of 82 human adult E. coli strains isolated from normal feces and during the course of extraintestinal infections. Commensal strains belong mainly to phylogenetic groups A and B1, are devoid of virulence determinants, and do not kill the mice. Strains exhibiting the same characteristics as the commensal strains can be isolated under pathogenic conditions, thus indicating the role of host-dependent factors, such as susceptibility linked to underlying disease, in the development of infection. Some strains of phylogenetic groups A, B1, and D are able to kill the mice, their virulence being most often correlated with the presence of virulence determinants. Lastly, strains of the B2 phylogenetic group represent a divergent lineage of highly virulent strains which kill the mice at high frequency and possess the highest level of virulence determinants. The observed link between virulence and phylogeny could correspond to the necessity of virulence determinants in a genetic background that is adequate for the emergence of a virulent clone, an expression of the interdependency of pathogenicity and metabolic activities in pathogenic bacteria.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“strains responsible for extra-intestinal infection were far more likely to be members of phylogroups B2 than A [143, 144]”
From Selection, Comparative Genomics, and Potential Probiotic Features of Escherichia coli 5C, a pks-Negative Strain Isolated from Healthy Infant Donor Feces (2026) · cites this paper as [143]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Escherichia coli and Salmonella :cellular and molecular biology
Neidhardt, F. C. (1996) · ASM Press eBooks · Cited by 8,197
Theory and Applications of Correspondence Analysis.
Jolliffe, I. T., & Greenacre, M. J. (1986) · Biometrics · doi:10.2307/2531266 · Cited by 3,026
Smith, J. M., Smith, N. H., O'Rourke, M., & Spratt, B. G. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.10.4384 · Cited by 1,802
The indigenous gastrointestinal microflora
Berg, R. (1996) · Trends in Microbiology · doi:10.1016/0966-842x(96)10057-3 · Cited by 1,153 · cited 1×
“In humans, strains of the species Escherichia coli can be commensal (since they are part of the normal intestinal microbial flora) and/or the cause of various infectious diseases (intestinal and extraintestinal infections) (2, 10).”
BackgroundPathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution
Hacker, J. H., Blum–Oehler, G., Mühldorfer, I., & Tschäpe, H. (1997) · Molecular Microbiology · doi:10.1046/j.1365-2958.1997.3101672.x · Cited by 1,130
Standard reference strains of Escherichia coli from natural populations
Ochman, H., & Selander, R. K. (1984) · Journal of Bacteriology · doi:10.1128/jb.157.2.690-693.1984 · Cited by 811
Herzer, P., Inouye, S., Inouye, M., & Whittam, T. (1990) · Journal of Bacteriology · doi:10.1128/jb.172.11.6175-6181.1990 · Cited by 564
Tenenhaus, M., & Young, F. W. (1985) · Psychometrika · doi:10.1007/bf02294151 · Cited by 419
Genetic Diversity and Structure in Escherichia coli Populations
Selander, R. K., & Levin, B. R. (1980) · Science · doi:10.1126/science.6999623 · Cited by 413
Whittam, T. S., Wolfe, M. L., Wachsmuth, I. K., Ørskov, F., Ørskov, I., & Wilson, R. A. (1993) · Infection and Immunity · doi:10.1128/iai.61.5.1619-1629.1993 · Cited by 370
Research works printed but not linked: 1
- Lebart L. Morineau A. Warwick K. M. Multivariate descriptive analysis: correspondence analysis and related technique for large matrices. 1984 Wiley-Interscience New York N.Y
Cited by
Sorted by citations
Items 701–799 of 799
Pathogenic Escherichia coli in retail meats
Xia, X. (2010) · University Libraries (University of Maryland) · Cited by 1
To Move or to Convene : Regulatory Circuits of Mat Fimbriae in Escherichia coli
Lehti, T. A. (2012) · Työväentutkimus Vuosikirja · Cited by 1
Class 1 integrons and their impact on the mobility of antibiotic resistance in clinical environments
Christopher, M. P. (2015) · Figshare · doi:10.25949/19438559 · Cited by 1
McLean, J. G. (2014) · The Atrium (University of Guelph) · Cited by 1
Forest and Water- Birds as Reservoirs of Some Pathogenic and Antimicrobial-Resistant Bacteria
Sawyerr, L. (2018) · Cited by 1
Gaborieau, B., Delattre, R., Adiba, S., Clermont, O., Denamur, É., Ricard, J.-D., & Debarbieux, L. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.09.01.506217 · Cited by 1
Sokhn, E. S. (2015) · Surrey Research Insight Open Access (The University of Surrey)
Extended Characterization of Human Uropathogenic Escherichia coli Isolates from Slovenia
Starčič, M., & Žgur‐Bertok, D. (2011) · InTech eBooks · doi:10.5772/24699
Encarnação, C. P. M. F. (2013) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)
Meireles, D. (2013) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)
Wilking, H. (2009) · Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver · doi:10.17169/refubium-13196
Povolotsky, T. L. (2015) · Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver · doi:10.17169/refubium-11296 · Cited by 1
Cohabitation within mice of Salmonella typhimurium seqA mutant increases its virulence
Messaoudi, N., Chatti, A., & Landoulsi, A. (2009) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-009-0141-0
Plummer, K. H. (2014) · Digital Commons - University of South Florida (University of South Florida)
Al-Mayahie, S. M. G. (2014) · American Journal of Biomedical and Life Sciences · doi:10.11648/j.ajbls.20140205.14
Kuo, T.-H., Tseng, C.-T., Wu, A., Lin, W., & Wang, M. (2011) · Acta Nephrologica
Nandanwar, N. (2014) · Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver · doi:10.17169/refubium-14004
Extraintestinal Pathogenic Escherichia Coli (ExPEC): An Emerging but Less–Appreciated Health Threat
Patel, B., Parmar, H., Machhar, U., Sinha, M., & Shingala, H. K. (2013) · International journal of scientific research
Isa, S., Mohammed, B. M., Fatima, U. M., Abubakar, A., Hadiza, A. M., & Muhammad, M. U. (2013) · Greener Journal of Microbiology and Antimicrobials · doi:10.15580/gjma.2013.1.090913832
Sharma, S., Prasad, L., Broor, S., Lakshmi, V., Rao, P. S., Kanungo, R., Rodrigues, C. T., Chaturvedi, U. C., Arseculeratne, S. N., Padhye, A. A., et al. (2007)
Hassani, B., Shayegh, J., Ameghi, A., Mikaili, P., & Mahmoudzadeh, M. (2013)
Azizi, F., Fallahi, S., Asadi-Samani, M., & Goudarzian, M. (2014) · Majallah-i dānishgāh-i ̒ulūm-i pizishkī-i Māzandarān/Journal of Mazandaran University of Medical Sciences
Nėščiųjų Escherichia coli nešiojimas makštyje ir perdavimas naujagimiams
Barčaitė, E., Nadišauskienė, R. J., Tamelienė, R., Maleckienė, L., Bartusevičius, A., Markūnienė, E., Vitkauskienė, A., & Dambrauskienė, A. (2010) · Lithuanian Obstetrics & Gynecology
Safi, M., Baaboura, R., Ksouri, H., Touati, A., & Hassen, A. B. (2012) · Infectious Diseases in Clinical Practice · doi:10.1097/ipc.0b013e31824f8c4f
Natsume, S., Nakaya, H., Sano, M., Nakaya, K., Natsumi, S. A. W. A., HEIJYO, H., & Masaki, H. (2014) · 医学検査 · doi:10.5833/jamt.13-10
Urinary tract infections in pregnancy : studies in vivo and in vitro
Sekikubo, M. (2016) · Figshare
Foodborne Pathogens and Host Predilection
Bean, D. C., & Post, L. S. (2017) · Springer eBooks · doi:10.1007/978-3-319-56836-2_18 · Cited by 1
- clinical, bacteriological and therapeutic aspects
Suojala, L. (2010) · Cited by 1
Al-Mayahie, S. M. G. (2010) · Maǧallaẗ ǧāmiʻaẗ Karbalāʼ/Maǧallaẗ ǧāmiʻaẗ karbalāʼ
Genetic Relatedness among Escherichia coli Isolated from Clinical Samples
Ahsan, S., Amin, R., & Bhowmik, A. (2019) · Bangladesh Journal of Microbiology · doi:10.3329/bjm.v34i2.39619
Elucidating the unknown ecology of bacterial pathogens from genomic data
Seecharran, T. (2018) · Nottingham Trent University's Institutional Repository (Nottingham Trent Repository)
Sepehri, S. (2010) · Mspace (University of Manitoba)
Madhloom, I. H., & Othman, R. M. (2017) · Basrah Journal of veterinary Research · doi:10.33762/bvetr.2017.143544
Ecology, Stress Response and Regulation of Virulence Genes in Escherichia coli
Fang, Y. (2019) · ERA: Education and Research Archive (University of Alberta) · doi:10.7939/r3-8k1d-vn44
Gene-centric intra- and inter-clade recombination in a context of Esche-richia coli subpopulationsPreprint
Kang, Y., Shi, X., Yuan, L., Chu, Y., Chen, F., He, Z., Gao, Z., Jia, X., Lin, Q., Ma, Q., et al. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/122713
Samanta, I., & Bandyopadhyay, S. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-815770-1.00015-8
Poojitha, A., ̈g, S. G. ̈., Madhavi, B., Gupta, N. H., Siddiqui, Q. U. B., Afzal, M., & Ghufran, M. A. (2022) · Pharmacology and Clinical Pharmacy Research · doi:10.15416/pcpr.v7i1.35446
Distinguishing Pathovars from Nonpathovars:Escherichia coli
Riley, L. W. (2014) · ASM Press eBooks · doi:10.1128/9781555817688.ch7
Molecular characteristics of Escherichia coli from bulk tank milk in Korea
Yoon, S., & Lee, Y. J. (2021) · Journal of Veterinary Science · doi:10.4142/jvs.2021.22.e85
González, M. A. C., Chávez-Díaz, S. K., Gamarra-Ramírez, R. G., Vásquez, H. V., Quilcate, C., & Cueva–Rodríguez, M. (2022) · Revista Científica de la Facultad de Ciencias Veterinarias · doi:10.52973/rcfcv-e32112
Royer, G., Clermont, O., Condamine, B., Dion, S., Galardini, M., & Denamur, É. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.11.25.517969
Prevalence of Extended Spectrum Beta Lactamase (ESBL)-Producing E. coli: A Systematic Overview
Vijayan, A., Sivaraman, G. K., & Bachmann, T. T. (2023) · Springer eBooks · doi:10.1007/978-981-16-9723-4_24-1
Extraintestinal Pathogenic Escherichia coli: Virulence Factors
Akdoğan, H., & Akpolat, N. (2023) · Türk Mikrobiyoloji Cemiyeti Dergisi · doi:10.54453/tmcd.2023.79037
Prevalence of Extended Spectrum Beta Lactamase (ESBL)-Producing E. coli: A Systematic Overview
Vijayan, A., Sivaraman, G. K., & Bachmann, T. T. (2023) · Springer eBooks · doi:10.1007/978-981-19-9279-7_24
Additional file 1 of E. coli diversity: low in colorectal cancer
Tang, L. M., Zhou, Y., Zhu, S., Liang, G.-D., Zhuang, H., Zhao, M.-F., Chang, X., Li, H., Liu, Z., Guo, Z., et al. (2020) · Figshare · doi:10.6084/m9.figshare.12097164
Additional file 3 of E. coli diversity: low in colorectal cancer
Tang, L., Zhou, Y., Zhu, S., Liang, G.-D., Zhuang, H., Zhao, M.-F., Chang, X., Li, H., Liu, Z., Guo, Z., et al. (2020) · Figshare · doi:10.6084/m9.figshare.12097173
Additional file 2 of E. coli diversity: low in colorectal cancer
Tang, L., Zhou, Y., Zhu, S., Liang, G.-D., Zhuang, H., Zhao, M.-F., Chang, X., Li, H., Liu, Z., Guo, Z., et al. (2020) · Figshare · doi:10.6084/m9.figshare.12097170
Colonisation of the gut microbiome by Escherichia coli during international travel
Davies, M. A. (2024) · Research Publications (Maastricht University) · doi:10.26481/dis.20240417md
Metrailer, M. C., Cheng, A.-C., Bluhm, A. P., Jiranantasak, T., Norris, M. H., Surphlus, A., Subramaniam, K., Jeong, K. C., Wisely, S. M., Campos, J. M., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.11.21.624738
Zhao, X. Y., Liang, J., Xia, Z., & Chen, C. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1526028
Elbir, H. (2025) · Veterinary Sciences · doi:10.3390/vetsci12050457
Frolova, M. S., Kiselev, S. S., Panyukov, V. V., & Ozoline, O. N. (2025) · Microorganisms · doi:10.3390/microorganisms13071584
Cheng, Y.-Y., Tsai, Y.-M., Chuang, Y., Fan, Y., Wang, M.-C., Chen, Y., Teng, C., Kuo, P.-Y., Thuy, T. T. D., Bregente, C. J. B., et al. (2025) · Gut Pathogens · doi:10.1186/s13099-025-00746-9 · Cited by 1
Surphlis, A. C., Cheng, A.-C., Metrailer, M. C., Bluhm, A. P., Jiranantasak, T., Tuozzo, F., Doster, E., Blackburn, J. K., Jeong, K. C., Boucher, C. A., et al. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1681096
Additional file 4 of E. coli diversity: low in colorectal cancer
Tang, L., Zhou, Y.-J., Zhu, S., Liang, G.-D., Zhuang, H., Zhao, M.-F., Chang, X.-Y., Li, H.-N., Liu, Z., Guo, Z.-R., et al. (2020) · Figshare · doi:10.6084/m9.figshare.12097182
Tantoso, E., Eisenhaber, B., Kirsch, M., Shitov, V., Zhao, Z., & Eisenhaber, F. (2022) · Figshare · doi:10.6084/m9.figshare.20087966
Lipworth, S., Vihta, K.-D., Chau, K., Barker, L., George, S., Kavanagh, J., Davies, T. J., Vaughan, A., Andersson, M. I., Jeffery, K., et al. (2021) · Figshare · doi:10.6084/m9.figshare.16570108
Khan, A., Saraf, V. S., Siddiqui, F., Batool, T., Noreen, Z., Javed, S., Ahmad, A., Alonazi, W. B., Ibrahim, M., Pucciarelli, S., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26690069
Tantoso, E., Eisenhaber, B., Kirsch, M., Shitov, V., Zhao, Z., & Eisenhaber, F. (2022) · Figshare · doi:10.6084/m9.figshare.20087975
Royer, G., Mercier-Darty, M., Clermont, O., Condamine, B., Laouenan, C., Decousser, J., Vallenet, D., Lefort, A., LASTOURS, V. D., & Denamur, É. (2021) · Figshare · doi:10.6084/m9.figshare.14544940
Khan, A., Saraf, V. S., Siddiqui, F., Batool, T., Noreen, Z., Javed, S., Ahmad, A., Alonazi, W. B., Ibrahim, M., Pucciarelli, S., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26690075
Kudinha, T., & Kong, F. (2022) · Figshare · doi:10.6084/m9.figshare.21018963
Khan, A., Saraf, V. S., Siddiqui, F., Batool, T., Noreen, Z., Javed, S., Ahmad, A., Alonazi, W. B., Ibrahim, M., Pucciarelli, S., et al. (2024) · Figshare · doi:10.6084/m9.figshare.25367455
Tantoso, E., Eisenhaber, B., Kirsch, M., Shitov, V., Zhao, Z., & Eisenhaber, F. (2022) · Figshare · doi:10.6084/m9.figshare.20087969
Khan, A., Saraf, V. S., Siddiqui, F., Batool, T., Noreen, Z., Javed, S., Ahmad, A., Alonazi, W. B., Ibrahim, M., Pucciarelli, S., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26690072
Khan, A., Saraf, V. S., Siddiqui, F., Batool, T., Noreen, Z., Javed, S., Ahmad, A., Alonazi, W. B., Ibrahim, M., Pucciarelli, S., et al. (2024) · Figshare · doi:10.6084/m9.figshare.25367301
Bacterial phylogeny explains variation in virulence but not phage efficacy in vivoPreprint
Walsh, S. K., Imrie, R. M., Buckling, A. G. J., & Longdon, B. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.05.704025
Tools for massive bacterial comparative genomics : Development and Applications
Perrin, A. (2022) · theses.fr (ABES) · doi:10.70675/a061aa00z774bz40c5zb870zba9af4cac64b
Echanges de gènes de résistance entre bactéries de différents biotopes
Pot, M. (2021) · theses.fr (ABES) · doi:10.70675/2e93bd41z65f9z4c7fz8c72z8da0076e32dc
Clokie, M. R. J., Michniewski, S., Wildsmith, C., Jameson, E., Brown, N., Daum, A. M., Akter, M., Attwood, M., Mahony, J., Gazioglu, O., et al. (2026) · Research Square · doi:10.21203/rs.3.rs-9930677/v1
Gersemann, A., Reiner, G., & von Berg, S. (2026) · Veterinary Sciences · doi:10.3390/vetsci13070666
Kpoda, D. S., Somda, N. S., Soubeiga, A. P., Drabo, M. S., Tankoano, O., Ouattara, M. B., Karfo, P., Nikièma, F., Kabré, E., Guessennd, N., et al. (2026) · Current Microbiology · doi:10.1007/s00284-026-05066-y
Feistel, D. J., Jesser, K. J., Levy, K., Trueba, G. A., & Konstantinidis, K. T. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.24.746700
Pirš, M., Kramar, U., Triglav, T., Smrdel, K. S., Šturm, A. C., Bezjak, L., & Janežič, S. (2026) · Frontiers in Public Health · doi:10.3389/fpubh.2026.1924446
Kerek, Á., Tornyos, G. Á., Husz, L. H., Hetyésy, M., Bali, K., Molnár, L., Kiss, S. P., Jerzsele, Á., & Kaszab, E. (2026) · Frontiers in Veterinary Science · doi:10.3389/fvets.2026.1959409
Metadata
- Authors
- Picard, B., Garcia, J. S., Gouriou, S., Duriez, P., Brahimi, N., Bingen, E., Elion, J., & Denamur, E.
- Affiliations
- Centre Hospitalier Régional Universitaire de Brest (FR)
- <!--label omitted: 2-->Laboratoire de Microbiologie, Hôpital Cochin, Assistance Publique—Hôpitaux de Paris,2
- Inserm (FR)
- <!--label omitted: 4-->Laboratoire de Recherche en Bactériologie Pédiatrique (JE 2255), Université Denis Diderot-Paris 7,4 Hôpital Robert Debré, Paris, France
- <!--label omitted: 3-->INSERM U 4583 and
- Venue
- Infection and Immunity
- Publisher
- American Society for Microbiology
- Published
- 1999-02
- Volume
- 67
- Issue
- 2
- Pages
- 546-553
- ISSN
- 0019-9567 (ISSN-L)
- 1098-5522
- PMC
- PMC96353
- OpenAlex
- W2125201618
- Cited by
- 794
- References
- 42
- Citations by year
- 2026: 13 · 2025: 17 · 2024: 32 · 2023: 27 · 2022: 43 · 2021: 39 · 2020: 46 · 2019: 33 · 2018: 29 · 2017: 34 · 2016: 39 · 2015: 46 · 2014: 52 · 2013: 38 · 2012: 36
- FWCI
- 8.54
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Infection and Immunity (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Life Sciences › Immunology and Microbiology › Microbiology › Enterobacteriaceae and Cronobacter Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- Escherichia coli, phylogenetic groups, extraintestinal infections, bacterial virulence, virulence factors, commensal strains, host susceptibility, pathogenicity, virulent clones
- MeSH terms
- Adult, Animals, Disease Models, Animal, Escherichia coli, Escherichia coli Infections, Female, Humans, Phylogeny, Virulence, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review