Impact of Heparan Sulfate Binding on Transduction of Retina by Recombinant Adeno-Associated Virus Vectors
Open accessAbstract
Adeno-associated viruses (AAVs) currently are being developed to efficiently transduce the retina following noninvasive, intravitreal (Ivt) injection. However, a major barrier encountered by intravitreally delivered AAVs is the inner limiting membrane (ILM), a basement membrane rich in heparan sulfate (HS) proteoglycan. The goal of this study was to determine the impact of HS binding on retinal transduction by Ivt-delivered AAVs. The heparin affinities of AAV2-based tyrosine-to-phenylalanine (Y-F) and threonine-to-valine (T-V) capsid mutants, designed to avoid proteasomal degradation during cellular trafficking, were established. In addition, the impact of grafting HS binding residues onto AAV1, AAV5, and AAV8(Y733F) as well as ablation of HS binding by AAV2-based vectors on retinal transduction was investigated. Finally, the potential relationship between thermal stability of AAV2-based capsids and Ivt-mediated transduction was explored. The results show that the Y-F and T-V AAV2 capsid mutants bind heparin but with slightly reduced affinity relative to that of AAV2. The grafting of HS binding increased Ivt transduction by AAV1 but not by AAV5 or AAV8(Y733F). The substitution of any canonical HS binding residues ablated Ivt-mediated transduction by AAV2-based vectors. However, these same HS variant vectors displayed efficient retinal transduction when delivered subretinally. Notably, a variant devoid of canonical HS binding residues, AAV2(4pMut)ΔHS, was remarkably efficient at transducing photoreceptors. The disparate AAV phenotypes indicate that HS binding, while critical for AAV2-based vectors, is not the sole determinant for transduction via the Ivt route. Finally, Y-F and T-V mutations alter capsid stability, with a potential relationship existing between stability and improvements in retinal transduction by Ivt injection. IMPORTANCE AAV has emerged as the vector of choice for gene delivery to the retina, with attention focused on developing vectors that can mediate transduction following noninvasive, intravitreal injection. HS binding has been postulated to play a role in intravitreally mediated transduction of retina. Our evaluation of the HS binding of AAV2-based variants and other AAV serotype vectors and the correlation of this property with transduction points to HS affinity as a factor controlling retinal transduction following Ivt delivery. However, HS binding is not the only requirement for improved Ivt-mediated transduction. We show that AAV2-based vectors lacking heparin binding transduce retina by subretinal injection and display a remarkable ability to transduce photoreceptors, indicating that other receptors are involved in this phenotype.
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Attempts to manipulate the ILM to reduce the necessary viral load for effective transduction have not resulted in gene expression in the outer retina.
“There have been attempts to manipulate the ILM to reduce the necessary viral load for effective transduction, including the use of proteases to digest the ILM [244,248,249], electric micro-currents [250], and non-penetrating AAV vectors to saturate heparan binding sites in the vitreous [251]. However, these techniques have not resulted in gene expression in the outer retina.”
From Bruch’s Membrane: A Key Consideration with Complement-Based Therapies for Age-Related Macular Degeneration (2023) · cites this paper as [248]
Cites
<i>Coot</i> : model-building tools for molecular graphics
Emsley, P., & Cowtan, K. (2004) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444904019158 · Cited by 30,571 · see citing works
The PyMOL Molecular Graphics System
DeLano, W. L. (2002) · Medical Entomology and Zoology · Cited by 18,147 · see citing works
Safety and Efficacy of Gene Transfer for Leber's Congenital Amaurosis
Maguire, A. M., Simonelli, F., Pierce, E. A., Pugh, E. N., Mingozzi, F., Bennicelli, J., Banfi, S., Marshall, K. A., Testa, F., Surace, E. M., et al. (2008) · New England Journal of Medicine · doi:10.1056/nejmoa0802315 · Cited by 2,145 · see citing works
Effect of gene therapy on visual function in Leber’s congenital amaurosis
Bainbridge, J. W. B., Smith, A. J., Barker, S. S., Robbie, S., Henderson, R., Balaggan, K., Viswanathan, A., Holder, G. E., Stockman, A., Tyler, N., et al. (2008) · New England Journal of Medicine · doi:10.1056/nejmoa0802268 · Cited by 1,924 · see citing works
Summerford, C., & Samulski, R. J. (1998) · Journal of Virology · doi:10.1128/jvi.72.2.1438-1445.1998 · Cited by 1,409 · see citing works
Gene therapy using adeno-associated virus vectors
Daya, S., & Berns, K. I. (2008) · Clinical Microbiology Reviews · doi:10.1128/cmr.00008-08 · Cited by 926 · see citing works
Dalkara, D., Byrne, L. C., Klimczak, R. R., Visel, M., Yin, L., Merigan, W. H., Flannery, J. G., & Schaffer, D. V. (2013) · Science Translational Medicine · doi:10.1126/scitranslmed.3005708 · Cited by 734 · cited 1× · see citing works
“(like the AAV2 Y-F and T-V variants), also binds heparin but with lower affinity than that of WT AAV2 (48).”
BackgroundCideciyan, A. V., Alemán, T. S., Boye, S. L., Schwartz, S., Kaushal, S., Román, A. J., Pang, J., Sumaroka, A., Windsor, E. A. M., Wilson, J. M., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0807027105 · Cited by 674 · see citing works
Self-citationJacobson, S. G. (2012) · Archives of Ophthalmology · doi:10.1001/archophthalmol.2011.298 · Cited by 639 · see citing works
Zhong, L., Li, B., Mah, C. S., Govindasamy, L., Agbandje-McKenna, M., Cooper, M., Herzog, R. W., Zolotukhin, I., Warrington, K. H., Weigel-Van Aken, K. A., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0802866105 · Cited by 558 · see citing works
Self-citationProduction and purification of serotype 1, 2, and 5 recombinant adeno-associated viral vectors
Zolotukhin, S., Potter, M., Zolotukhin, I., Sakai, Y., Loiler, S., Fraites, T. J., Chiodo, V. A., Philipsberg, T., Muzyczka, N., Hauswirth, W. W., et al. (2002) · Methods · doi:10.1016/s1046-2023(02)00220-7 · Cited by 556 · see citing works
Retro-orbital injections in mice
Yardeni, T., Eckhaus, M., Morris, H. D., Huizing, M., & Hoogstraten-Miller, S. L. (2011) · Lab Animal · doi:10.1038/laban0511-155 · Cited by 533 · see citing works
Identification of a heparin-binding motif on adeno-associated virus type 2 capsids
Kern, A., Schmidt, K., Leder, C., Müller, O. J., Wobus, C. E., Bettinger, K., Von der Lieth, C. W., King, J. A., & Kleinschmidt, J. A. (2003) · Journal of Virology · doi:10.1128/jvi.77.20.11072-11081.2003 · Cited by 380 · see citing works
Opie, S. R., Warrington, Agbandje-McKenna, M., Zolotukhin, S., & Muzyczka, N. (2003) · Journal of Virology · doi:10.1128/jvi.77.12.6995-7006.2003 · Cited by 364 · see citing works
Self-citationInner limiting membrane barriers to aav-mediated retinal transduction from the vitreous
Dalkara, D., Kolstad, K. D., Caporale, N., Visel, M., Klimczak, R. R., Schaffer, D. V., & Flannery, J. G. (2009) · Molecular Therapy · doi:10.1038/mt.2009.181 · Cited by 357 · see citing works
Overcoming Preexisting Humoral Immunity to AAV Using Capsid Decoys
Mingozzi, F., Anguela, X. M., Pavani, G., Chen, Y., Davidson, R. J., Hui, D. J., Yazicioglu, M., Elkouby, L., Hinderer, C. J., Faella, A., et al. (2013) · Science Translational Medicine · doi:10.1126/scitranslmed.3005795 · Cited by 355 · see citing works
Gene therapy for red–green colour blindness in adult primates
Mancuso, K., Hauswirth, W. W., Li, Q., Connor, T. B., Kuchenbecker, J. A., Mauck, M. C., Jay Neitz, A., & Neitz, M. (2009) · Nature · doi:10.1038/nature08401 · Cited by 349 · see citing works
Akimoto, M., Cheng, H., Zhu, D., Brzezinski, J. A., Khanna, R., Filippova, E. V., Oh, E. C. T., Jing, Y., Linares, J., Brooks, M., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508214103 · Cited by 314 · see citing works
Novel properties of tyrosine-mutant AAV2 vectors in the mouse retina
Petrs-Silva, H., Dinculescu, A., Li, Q., Deng, W.-T., Pang, J.-J., Min, S.-H., Chiodo, V., Neeley, A. W., Govindasamy, L., Bennett, A., et al. (2011) · Molecular Therapy · doi:10.1038/mt.2010.234 · Cited by 267 · see citing works
Self-citationA comprehensive review of retinal gene therapy
Boye, S. E., Boye, S. L., Lewin, A. S., & Hauswirth, W. W. (2013) · Molecular Therapy · doi:10.1038/mt.2012.280 · Cited by 262 · see citing works
Self-citationStructure of Adeno-Associated Virus Serotype 8, a Gene Therapy Vector
Nam, H.-J., Lane, M. D., Padron, E., Gurda, B. L., McKENNA, R. V., Kohlbrenner, E., Aslanidi, G., Byrne, B. J., Muzyczka, N., Zolotukhin, S., et al. (2007) · Journal of Virology · doi:10.1128/jvi.01304-07 · Cited by 256 · see citing works
Self-citationDosage thresholds for AAV2 and AAV8 photoreceptor gene therapy in monkey
Vandenberghe, L. H., Bell, P., Maguire, A. M., Cearley, C. N., Xiao, R., Calcedo, R., Wang, L., Castle, M. J., Maguire, A. C., Grant, R., et al. (2011) · Science Translational Medicine · doi:10.1126/scitranslmed.3002103 · Cited by 242 · see citing works
Wu, Z., Asokan, A., Grieger, J. C., Lakshmanan Govindasamy, A., Agbandje‐McKenna, M., & Samulski, R. J. (2006) · Journal of Virology · doi:10.1128/jvi.01288-06 · Cited by 239 · see citing works
Self-citationJacobson, S. G., Acland, G. M., Aguirre, G. D., Aleman, T. S., Schwartz, S. B., Cideciyan, A. V., Zeiss, C. J., Komaromy, A. M., Kaushal, S., Roman, A. J., et al. (2006) · Molecular Therapy · doi:10.1016/j.ymthe.2006.03.005 · Cited by 224 · see citing works
Self-citationStructural insight into the unique properties of adeno-associated virus serotype 9
DiMattia, M. A., Nam, H.-J., Van Vliet, K., Mitchell, M., Bennett, A., Gurda, B. L., McKenna, R., Olson, N. H., Sinkovits, R. S., Potter, M., et al. (2012) · Journal of Virology · doi:10.1128/jvi.07232-11 · Cited by 219 · see citing works
Self-citationKlimczak, R. R., Koerber, J. T., Dalkara, D., Flannery, J. G., & Schaffer, D. V. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007467 · Cited by 210 · see citing works
Heparin binding directs activation of T cells against adeno-associated virus serotype 2 capsid
Vandenberghe, L. H., Wang, L., Somanathan, S., Zhi, Y., Figueredo, J., Calcedo, R., Sanmiguel, J., Desai, R. A., Chen, C. S., Johnston, J., et al. (2006) · Nature Medicine · doi:10.1038/nm1445 · Cited by 208 · see citing works
Novel AAV serotypes for improved ocular gene transfer
Lebherz, C., Maguire, A. M., Tang, W., Bennett, J., & Wilson, J. M. (2008) · The Journal of Gene Medicine · doi:10.1002/jgm.1126 · Cited by 207 · see citing works
Structurally mapping the diverse phenotype of adeno-associated virus serotype 4
Govindasamy, L., Padron, E., McKenna, R., Muzyczka, N., Kaludov, N., Chiorini, J. A., & Agbandje-McKenna, M. (2006) · Journal of Virology · doi:10.1128/jvi.01536-06 · Cited by 205 · see citing works
Self-citationTargeting photoreceptors via intravitreal delivery using novel, capsid-mutated AAV vectors
Kay, C. N., Ryals, R. C., Aslanidi, G. V., Min, S. H., Ruan, Q., Sun, J., Dyka, F. M., Kasuga, D., Ayala, A. E., Van Vliet, K., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0062097 · Cited by 168 · see citing works
Self-citationMartino, A. T., Basner-Tschakarjan, E., Markusic, D. M., Finn, J. D., Hinderer, C., Zhou, S., Ostrov, D. A., Srivastava, A., Ertl, H. C. J., Terhorst, C., et al. (2013) · Blood · doi:10.1182/blood-2012-10-460733 · Cited by 162 · see citing works
Versatility of AAV vectors for retinal gene transfer
Surace, E. M., & Auricchio, A. (2007) · Vision Research · doi:10.1016/j.visres.2007.07.027 · Cited by 145 · see citing works
Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6
Ng, R., Lakshmanan Govindasamy, A., Gurda, B. L., McKENNA, R. V., Kozyreva, O. G., Samulski, R. J., Parent, K. N., Baker, T. S., & Agbandje‐McKenna, M. (2010) · Journal of Virology · doi:10.1128/jvi.01235-10 · Cited by 143 · see citing works
Self-citationHellström, M., Ruitenberg, M. J., Pollett, M. A., Ehlert, E. M. E., Twisk, J., Verhaagen, J., & Harvey, A. R. (2009) · Gene Therapy · doi:10.1038/gt.2008.178 · Cited by 142 · see citing works
Interpretation of electron density with stereographic roadmap projections
Xiao, C., & Rossmann, M. G. (2006) · Journal of Structural Biology · doi:10.1016/j.jsb.2006.10.013 · Cited by 140 · see citing works
Khani, S. C., Pawlyk, B. S., Bulgakov, O. V., Kasperek, E. M., Young, J. E., Adamian, M., Sun, X., Smith, A. J., Ali, R. R., & Li, T. (2007) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.07-0257 · Cited by 138 · see citing works
Perabò, L., Goldnau, D., White, K., Endell, J., Bouças, J., Humme, S., Work, L. M., Janicki, H., Hallek, M. J., Baker, A. H., et al. (2006) · Journal of Virology · doi:10.1128/jvi.00076-06 · Cited by 135 · see citing works
Markusic, D. M., Herzog, R. W., Aslanidi, G. V., Hoffman, B. E., Li, B., Li, M., Jayandharan, G. R., Ling, C., Zolotukhin, I., Ma, W., et al. (2010) · Molecular Therapy · doi:10.1038/mt.2010.172 · Cited by 131 · see citing works
Adeno-associated virus-2 and its primary cellular receptor—Cryo-EM structure of a heparin complex
O’Donnell, J., Taylor, K. A., & Chapman, M. S. (2009) · Virology · doi:10.1016/j.virol.2008.11.037 · Cited by 126 · see citing works
Boye, S. E., Alexander, J. J., Boye, S. L., Witherspoon, C. D., Sandefer, K. J., Conlon, T. J., Erger, K., Sun, J., Ryals, R., Chiodo, V. A., et al. (2012) · Human Gene Therapy · doi:10.1089/hum.2012.125 · Cited by 117 · see citing works
Self-citationSubretinal injections in rodent eyes: effects on electrophysiology and histology of rat retina.
Timmers, A. M., Zhang, H., Squitieri, A., & Gonzalez-Pola, C. (2001) · PubMed · Cited by 110 · see citing works
Heparin binding induces conformational changes in Adeno-associated virus serotype 2
Levy, H. C., Bowman, V. D., Govindasamy, L., McKenna, R., Nash, K., Warrington, K., Chen, W., Muzyczka, N., Yan, X., Baker, T. S., et al. (2009) · Journal of Structural Biology · doi:10.1016/j.jsb.2008.12.002 · Cited by 110 · see citing works
Self-citationLotery, A. J., Yang, G. S., Mullins, R. F., Russell, S. R., Schmidt, M., Stone, E. M., Lindbloom, J. D., Chiorini, J. A., Kotin, R. M., & Davidson, B. L. (2003) · Human Gene Therapy · doi:10.1089/104303403322542301 · Cited by 107 · see citing works
Lerch, T. F., Xie, Q., & Chapman, M. S. (2010) · Virology · doi:10.1016/j.virol.2010.03.027 · Cited by 107 · see citing works
AAV9 targets cone photoreceptors in the nonhuman primate retina
Vandenberghe, L. H., Bell, P., Maguire, A. M., Xiao, R., Hopkins, T. B., Grant, R., Bennett, J., & Wilson, J. M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0053463 · Cited by 97 · see citing works
Aslanidi, G., Rivers, A. E., Ortiz, L., Song, L., Ling, C., Govindasamy, L., Vliet, K. V., Tan, M., Agbandje‐McKenna, M., & Srivastava, A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0059142 · Cited by 96 · see citing works
Self-citationStructural insights into adeno-associated virus serotype 5
Govindasamy, L., DiMattia, M. A., Gurda, B. L., Halder, S., McKenna, R., Chiorini, J. A., Muzyczka, N., Zolotukhin, S., & Agbandje-McKenna, M. (2013) · Journal of Virology · doi:10.1128/jvi.00867-13 · Cited by 95 · see citing works
Self-citationStructure–function analysis of receptor-binding in adeno-associated virus serotype 6 (AAV-6)
Xie, Q., Lerch, T. F., Meyer, N., & Chapman, M. S. (2011) · Virology · doi:10.1016/j.virol.2011.08.011 · Cited by 70 · see citing works
Boye, S. L., Conlon, T. J., Erger, K. E., Ryals, R. C., Neeley, A. W., Cossette, T. L., Pang, J., Dyka, F. M., Hauswirth, W. W., & Boye, S. L. (2011) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.11-7867 · Cited by 63 · see citing works
Self-citationCresawn, K. O., Fraites, T. J., Wasserfall, C. H., Atkinson, M. A., Lewis, M., Porvasnik, S., Liu, C., Mah, C. S., & Byrne, B. J. (2005) · Human Gene Therapy · doi:10.1089/hum.2005.16.68 · Cited by 57 · see citing works
Kong, F., Li, W., Li, X., Zheng, Q., Dai, X., Zhou, X., Boye, S. L., Hauswirth, W. W., Qu, J., & Pang, J. (2010) · Experimental Eye Research · doi:10.1016/j.exer.2010.01.011 · Cited by 52 · see citing works
Self-citation(2011) · PubMed Central · Cited by 41 · see citing works
Self-citationThe structure of AAVrh32.33, a novel gene delivery vector
Mikals, K., Nam, H.-J., Vliet, K. V., Vandenberghe, L. H., Mays, L. E., McKENNA, R. V., Wilson, J. M., & Agbandje‐McKenna, M. (2014) · Journal of Structural Biology · doi:10.1016/j.jsb.2014.03.020 · Cited by 40 · see citing works
Self-citationPhotoreceptor-targeted gene delivery using intravitreally administered AAV vectors in dogs
Boyd, R. F., Sledge, D. G., Boye, S. L., Boye, S. E., Hauswirth, W. W., Komáromy, A. M., Petersen‐Jones, S. M., & Bartoe, J. T. (2015) · Gene Therapy · doi:10.1038/gt.2015.96 · Cited by 38 · see citing works
Self-citationRecombinant adeno-associated virus targets passenger gene expression to cones in primate retina
Mancuso, K., Hendrickson, A. E., Connor, T. B., Mauck, M. C., Kinsella, J. J., Hauswirth, W. W., Jay Neitz, A., & Neitz, M. (2007) · Journal of the Optical Society of America A · doi:10.1364/josaa.24.001411 · Cited by 29 · see citing works
Foulds, W. S. (1988) · Eye · doi:10.1038/eye.1988.46 · Cited by 21 · see citing works
Chai, L., & Morris, J. E. (1994) · Current Eye Research · doi:10.3109/02713689408999903 · Cited by 20 · see citing works
Erratum: Photoreceptor-targeted gene delivery using intravitreally administered AAV vectors in dogs
Boyd, R. F., Sledge, D. G., Boye, S. L., Boye, S. L., Hauswirth, W. W., Komáromy, A. M., Petersen‐Jones, S. M., & Bartoe, J. T. (2016) · Gene Therapy · doi:10.1038/gt.2016.10 · Cited by 11 · see citing works
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Srivastava, A. (2016) · Current Opinion in Virology · doi:10.1016/j.coviro.2016.08.003 · Cited by 346 · see citing works
Wassmer, S. J., Carvalho, L. S., György, B., Vandenberghe, L. H., & Maguire, C. A. (2017) · Scientific Reports · doi:10.1038/srep45329 · Cited by 164 · see citing works
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Bennett, A. D., Patel, S., Mietzsch, M., Jose, A., Lins, B., Yu, J. C., Bothner, B. B., McKENNA, R. V., & Agbandje‐McKenna, M. (2017) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2017.07.003 · Cited by 157 · see citing works
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Maes, M. E., Colombo, G., Schulz, R., & Siegert, S. (2019) · Neuroscience Letters · doi:10.1016/j.neulet.2019.134310 · Cited by 145 · see citing works
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Khabou, H., Garita-Hernandez, M., Chaffiol, A., Reichman, S., Jaillard, C., Brazhnikova, E., Bertin, S., Forster, V., Desrosiers, M., Winckler, C., et al. (2018) · JCI Insight · doi:10.1172/jci.insight.96029 · Cited by 124 · see citing works
Tordo, J., O’Leary, C., Antunes, A. S. L. M., Palomar, N., Aldrin-Kirk, P., Basche, M., Bennett, A., D’Souza, Z., Gleitz, H., Godwin, A., et al. (2018) · Brain · doi:10.1093/brain/awy126 · Cited by 113 · see citing works
Self-citationPeynshaert, K., Devoldere, J., Minnaert, A., Smedt, S. C. D., & Remaut, K. (2019) · Current Eye Research · doi:10.1080/02713683.2019.1565890 · Cited by 92 · see citing works
Mammadzada, P., Corredoira, P. M. F., & André, H. (2019) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-019-03422-9 · Cited by 90 · see citing works
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Self-citationNieuwenhuis, B., Laperrousaz, E., Tribble, J. R., Verhaagen, J., Fawcett, J. W., Martin, K. R. G., Williams, P. A., & Osborne, A. (2023) · Gene Therapy · doi:10.1038/s41434-022-00380-z · Cited by 77 · see citing works
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Pacouret, S., Bouzelha, M., Shelke, R., Andres-Mateos, E., Xiao, R., Maurer, A., Mevel, M., Turunen, H., Barungi, T., Penaud-Budloo, M., et al. (2017) · Molecular Therapy · doi:10.1016/j.ymthe.2017.04.001 · Cited by 69 · see citing works
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Self-citationKhabou, H., Desrosiers, M., Winckler, C., Fouquet, S., Auregan, G., Bemelmans, A., Sahel, J., & Dalkara, D. (2016) · Biotechnology and Bioengineering · doi:10.1002/bit.26031 · Cited by 71 · see citing works
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Woodard, K. T., Liang, K. J., Bennett, W. C., & Samulski, R. J. (2016) · Journal of Virology · doi:10.1128/jvi.01568-16 · Cited by 59 · see citing works
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Shastri, D. H., Silva, A. C., & Almeida, H. (2023) · Pharmaceutics · doi:10.3390/pharmaceutics15010205 · Cited by 54 · see citing works
Wang, J.-H., Zhan, W., Gallagher, T. L., & Gao, G. (2024) · Molecular Therapy · doi:10.1016/j.ymthe.2024.10.017 · Cited by 48 · see citing works
Evaluation of AAV-DJ vector for retinal gene therapy
Katada, Y., Kobayashi, K., Tsubota, K., & Kurihara, T. (2019) · PeerJ · doi:10.7717/peerj.6317 · Cited by 46 · see citing works
Cabanes‐Creus, M., Westhaus, A., Navarro, R. G., Baltazar, G., Zhu, E., Amaya, A. K., Liao, S. H. Y., Scott, S., Sallard, E., Dilworth, K. L., et al. (2020) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2020.05.004 · Cited by 45 · see citing works
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Gamlin, P. D., Alexander, J. J., Boye, S. L., Witherspoon, C. D., & Boye, S. L. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9139-6_14 · Cited by 46 · see citing works
Self-citationHammadi, S., Tzoumas, N., Ferrara, M., Meschede, I. P., Lo, K., Harris, C., Lako, M., & Steel, D. H. (2023) · Journal of Clinical Medicine · doi:10.3390/jcm12082870 · Cited by 44 · see citing works
Adeno-Associated Virus (AAV) - Based Gene Therapies for Retinal Diseases: Where are We?
Ail, D., Malki, H., Zin, E. A., & Dalkara, D. (2023) · The Application of Clinical Genetics · doi:10.2147/tacg.s383453 · Cited by 40 · see citing works
Engineered Capsids for Efficient Gene Delivery to the Retina and Cornea
Frederick, A., Sullivan, J., Liu, L., Adamowicz, M., Lukason, M., Raymer, J., Luo, Z., Jin, X., Rao, K. N., & O'Riordan, C. (2020) · Human Gene Therapy · doi:10.1089/hum.2020.070 · Cited by 35 · see citing works
Rationally designed AAV2 and AAVrh8R capsids provide improved transduction in the retina and brain
Sullivan, J. A., Stanek, L. M., Lukason, M. J., Bu, J., Osmond, S. R., Barry, E. A., O’Riordan, C. R., Shihabuddin, L. S., Cheng, S. H., & Scaria, A. (2018) · Gene Therapy · doi:10.1038/s41434-018-0017-8 · Cited by 37 · see citing works
Engineering AAV receptor footprints for gene therapy
Madigan, V. J., & Asokan, A. (2016) · Current Opinion in Virology · doi:10.1016/j.coviro.2016.05.001 · Cited by 37 · see citing works
Multimodal Production of Adeno-Associated Virus
Sandoval, I. M., Kuhn, N. M., & Manfredsson, F. P. (2019) · Methods in Molecular Biology · doi:10.1007/978-1-4939-9065-8_6 · Cited by 32 · see citing works
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Poth, K. M., Texakalidis, P., & Boulis, N. M. (2021) · Neurosurgery · doi:10.1093/neuros/nyab147 · Cited by 31 · see citing works
Development of AAV Variants with Human Hepatocyte Tropism and Neutralizing Antibody Escape Capacity
Pei, X., Shao, W., Xing, A., Askew, C., Chen, X., Cui, C., Abajas, Y. L., Gerber, D. A., Merricks, E. P., Nichols, T. C., et al. (2020) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2020.06.003 · Cited by 30 · see citing works
Kiss, S., Grishanin, R., Nguyen, A., Rosario, R., Greengard, J. S., Nieves, J., Gelfman, C. M., & Gasmi, M. (2020) · Molecular Therapy - Methods & Clinical Development · doi:10.1016/j.omtm.2020.06.007 · Cited by 29 · see citing works
Novel AAV44.9-Based Vectors Display Exceptional Characteristics for Retinal Gene Therapy
Boye, S. L., Choudhury, S., Crosson, S., Di Pasquale, G., Afione, S., Mellen, R., Makal, V., Calabro, K. R., Fajardo, D., Peterson, J., et al. (2020) · Molecular Therapy · doi:10.1016/j.ymthe.2020.04.002 · Cited by 29 · see citing works
Self-citationGene therapy for inherited retinal degenerations: initial successes and future challenges
Gupta, P. R., & Huckfeldt, R. M. (2017) · Journal of Neural Engineering · doi:10.1088/1741-2552/aa7a27 · Cited by 29 · see citing works
Lee, S. H., Yang, J. Y., Madrakhimov, S. B., Park, H. Y., Park, K., & Park, T. K. (2018) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2018.11.008 · Cited by 28 · see citing works
Kellish, P. C., Marsic, D., Crosson, S. M., Choudhury, S., Scalabrino, M. L., Strang, C. E., Hill, J. L., McCullough, K. T., Peterson, J. J., Fajardo, D. S., et al. (2023) · Molecular Therapy · doi:10.1016/j.ymthe.2023.10.001 · Cited by 25 · see citing works
Self-citationGilhooley, M. J., Hickey, D. G., Lindner, M., Palumaa, T., Hughes, S., Peirson, S. N., MacLaren, R. E., & Hankins, M. W. (2021) · Experimental Eye Research · doi:10.1016/j.exer.2021.108553 · Cited by 26 · see citing works
Lee, S. H., Sim, K. S., Kim, C. Y., & Park, T. K. (2019) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2019.06.009 · Cited by 26 · see citing works
Shiozawa, A. L., Igarashi, T., Kobayashi, M., Nakamoto, K., Kameya, S., Fujishita, S., Takahashi, H., & Okada, T. (2020) · PubMed Central · Cited by 22 · see citing works
Dai, X., He, Y., Zhang, H., Zhang, Y., Liu, Y., Wang, M., Chen, H., & Pang, J. (2017) · PLoS ONE · doi:10.1371/journal.pone.0188032 · Cited by 20 · see citing works
Gorbatyuk, O. S., Warrington, K. H., Gorbatyuk, M. S., Zolotukhin, I., Lewin, A. S., & Muzyczka, N. (2019) · Virus Research · doi:10.1016/j.virusres.2019.197771 · Cited by 18 · see citing works
Crosson, S. M., Bennett, A., Fajardo, D., Peterson, J. J., Zhang, H., Li, W., Leahy, M. T., Jennings, C. K., Boyd, R. F., Boye, S. L., et al. (2021) · Journal of Virology · doi:10.1128/jvi.02440-20 · Cited by 16 · see citing works
Self-citationRetina transduction by rAAV2 after intravitreal injection: Comparison between mouse and rat
Dias, M. S., Araujo, V. G., Vasconcelos, T., Li, Q., Hauswirth, W. W., Linden, R., & Petrs-Silva, H. (2019) · Gene Therapy · doi:10.1038/s41434-019-0100-9 · Cited by 17 · see citing works
Anand, M. A. V., Yang, C.-J., Wang, W.-L., Yao, C., & Lai, J. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2026.150199 · Cited by 14 · see citing works
Comparative structural, biophysical, and receptor binding study of true type and wild type AAV2
Bennett, A. D., Hull, J. A., Jolinon, N., Tordo, J., Moss, K., Binns, E., Mietzsch, M., Hagemann, C., Linden, R. M., Serio, A., et al. (2021) · Journal of Structural Biology · doi:10.1016/j.jsb.2021.107795 · Cited by 13 · see citing works
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Parsons, D., Hyeon, L. S., Sun, Y. J., Velez, G., Bassuk, A. G., Smith, M. A., & Mahajan, V. B. (2021) · Biomolecules · doi:10.3390/biom11030339 · Cited by 13 · see citing works
Gene therapy for geographic atrophy in age-related macular degeneration: current insights
Jamil, M. U., & Waheed, N. K. (2024) · Eye · doi:10.1038/s41433-024-03463-w · Cited by 12 · see citing works
Maes, M. E., Wögenstein, G. M., Colombo, G., Casado-Polanco, R., & Siegert, S. (2021) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2021.09.006 · Cited by 12 · see citing works
Huang, X., Peng, M., Yang, Y., Duan, Y., Li, K., Liu, S., Ye, C., & Lin, D. (2017) · Drug Delivery · doi:10.1080/10717544.2017.1324531 · Cited by 12 · see citing works
Clerck, K. D., Smedt, S. C. D., Remaut, K., & Peynshaert, K. (2025) · Journal of Controlled Release · doi:10.1016/j.jconrel.2025.113849 · Cited by 11 · see citing works
Developing New Vectors for Retinal Gene TherapyPreprint
Zin, E. A., Öztürk, B. E., Dalkara, D., & Byrne, L. C. (2023) · Cold Spring Harbor Perspectives in Medicine · doi:10.1101/cshperspect.a041291 · Cited by 12 · see citing works
Engineered AAV capsid transport mutants overcome transduction deficiencies in the aged CNS
Sandoval, I. M., Kelley, C. M., Bernal-Conde, L. D., Steece‐Collier, K., Marmion, D. J., Davidsson, M., Crosson, S. M., Boye, S. L., Boye, S. L., & Manfredsson, F. P. (2024) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2024.102332 · Cited by 8 · see citing works
Self-citationHinsch, V. G., Boye, S. L., & Boye, S. E. (2025) · Human Gene Therapy · doi:10.1089/hum.2024.252 · Cited by 9 · see citing works
Self-citationStrategies of AAV capsid engineering for targeted delivery to brain, muscle, and retina
Xu, X. (2026) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2025.1750807 · Cited by 8 · see citing works
Basic Concepts in Viral Vector-Mediated Gene Therapy
Benskey, M. J., Sandoval, I. M., Miller, K., Sellnow, R. C., Gezer, A. O., Kuhn, N. C., Vashon, R., & Manfredsson, F. P. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9065-8_1 · Cited by 8 · see citing works
Boye, S. L., O’Riordan, C., Morris, J., Lukason, M., Compton, D., Baek, R., Elmore, D. M., Peterson, J. J., Fajardo, D., McCullough, K. T., et al. (2022) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2022.12.007 · Cited by 8 · see citing works
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Choudhury, S., Strang, C. E., Alexander, J. J., Scalabrino, M. L., Hill, J. L., Kasuga, D. T., Witherspoon, C. D., Boye, S. L., Gamlin, P. D., & Boye, S. L. (2016) · Frontiers in Neuroscience · doi:10.3389/fnins.2016.00551 · Cited by 8 · see citing works
Self-citationRomanovsky, D., Scherk, H., Föhr, B., Babutzka, S., Bogedein, J., Lu, Y., Reschigna, A., & Michalakis, S. (2025) · European Journal of Pharmaceutical Sciences · doi:10.1016/j.ejps.2025.107012 · Cited by 7 · see citing works
Zhang, H., Sajdak, B. S., Merriman, D. K., Carroll, J., & Lipinski, D. M. (2021) · Molecular Therapy — Methods & Clinical Development · doi:10.1016/j.omtm.2021.06.005 · Cited by 6 · see citing works
Identification of Novel Retinal Pericyte-Targeting rAAV Vectors Through Directed Evolution
Patel, D. D., Marsic, D., Periasamy, R., Zolotukhin, S., & Lipinski, D. M. (2022) · Translational Vision Science & Technology · doi:10.1167/tvst.11.8.28 · Cited by 6 · see citing works
Yang, Z., Jiang, X., & Gao, J. (2024) · International Journal of Pharmaceutics · doi:10.1016/j.ijpharm.2024.125069 · Cited by 5 · see citing works
Immunobiology of a rationally-designed AAV2 capsid following intravitreal delivery in mice
Whitehead, M., Sage, A., Burgoyne, T., Osborne, A., Yu‐Wai‐Man, P., & Martin, K. R. G. (2023) · Gene Therapy · doi:10.1038/s41434-023-00409-x · Cited by 4 · see citing works
Viral Vector Technologies and Strategies: Improving on Nature
Croze, R. H., Kotterman, M. A., Burns, C. H., Schmitt, C. E., Quezada, M., Schaffer, D. V., Kirn, D. H., & Francis, P. J. (2021) · International Ophthalmology Clinics · doi:10.1097/iio.0000000000000361 · Cited by 5 · see citing works
You, S., Zhou, H., Yang, S., Wu, S., Chen, X., Zhang, R., Chen, W., Wang, H., & Mo, X. (2023) · Journal of Ocular Pharmacology and Therapeutics · doi:10.1089/jop.2022.0114 · Cited by 4 · see citing works
Retinal Penetrating Adeno-Associated Virus
Kumar, B., Mishra, M., Cashman, S. M., & Kumar‐Singh, R. (2024) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.65.10.30 · Cited by 4 · see citing works
Application Prospects for Synthetic Nanoparticles in Optogenetic Retinal Prosthetics
Rotov, A. Y., Romanov, I. S., Tarakanchikova, Y. V., & Astakhova, L. A. (2021) · Journal of Evolutionary Biochemistry and Physiology · doi:10.1134/s0022093021060132 · Cited by 4 · see citing works
Accelerated maturation of ARPE ‐19 cells for the translational assessment of gene therapy
Bernd, J., Plastino, F., Karayannis, J. J., Kvanta, A., Locri, F., & André, H. (2024) · The FASEB Journal · doi:10.1096/fj.202301707rr · Cited by 3 · see citing works
Tropism and Retinal Transduction Efficiency of Adeno-Associated Virus Serotypes in Mice
Wu, W., McRae, J., Brown, A., & Agbaga, M. (2025) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.66.12.18 · Cited by 2 · see citing works
Hu, J., Zhang, M., Zhang, Y., Zhang, C., Zhang, Y., Wang, R., Shen, L., Li, J., & Song, X. (2024) · PubMed Central · doi:10.12122/j.issn.1673-4254.2024.04.19 · Cited by 2 · see citing works
Interrogating the dependency of AAV capsids on AAVR for retinal transduction
Hinsch, V. G., Kellish, P. C., Xu, E. M., Fajardo, D., McLaughlin, K., Kiel, K. N., Peterson, J. J., Friend, H. L., Boye, S. L., & Boye, S. E. (2026) · Molecular Therapy Advances · doi:10.1016/j.omta.2026.201677 · Cited by 1 · see citing works
Self-citationThermostability of Adeno-Associated Virus (AAV) Vectors
Pacouret, S. (2018) · theses.fr (ABES) · doi:10.70675/33e13ef9z7aefz418dz8fdez21352cc194bc
Development of safe and efficient aav vectors for retinal gene therapy
Khabou, H. (2018) · theses.fr (ABES) · doi:10.70675/aa896663z9772z4d87z9bd1z247af1f0e3f1
Rethinking nonsense suppression therapies in inherited retinal diseases
Ren, C., Hu, C., Hu, M., Yang, Y., & Lu, F. (2026) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2026.09.017
- Authors
- Boye, S. L., Bennett, A., Scalabrino, M. L., McCullough, K. T., Van Vliet, K., Choudhury, S., Ruan, Q., Peterson, J., Agbandje-McKenna, M., & Boye, S. E.
- Affiliations
- Department of Ophthalmology, College of Medicine, University of Florida, Gainesville, Florida, USA
- University of Florida (US)
- Department of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, Florida, USA
- Venue
- Journal of Virology
- Publisher
- American Society for Microbiology
- Published
- 2016-04-15
- Volume
- 90
- Issue
- 8
- Pages
- 4215-4231
- ISSN
- 0022-538X (ISSN-L)
- 1098-5514
- PMC
- PMC4810560
- OpenAlex
- W2319893601
- Cited by
- 79
- References
- 58
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 7 · 2023: 9 · 2022: 3 · 2021: 10 · 2020: 6 · 2019: 14 · 2018: 6 · 2017: 10 · 2016: 6
- FWCI
- 9.68
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Journal of Virology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Research to Prevent Blindness
- HHS | NIH | National Eye Institute (R01EY024280, P30EY021721)
- Foundation Fighting Blindness
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Retinal Development and Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Keywords
- adeno-associated virus vectors, heparan sulfate binding, retinal transduction, intravitreal injection, internal limiting membrane, AAV2, AAV1, AAV5, AAV8, photoreceptors, serotype differences, subretinal delivery
- MeSH terms
- Dependovirus, Animals, Capsid, Genetic Vectors, Heparan Sulfate, Humans, Injections, Intravenous, Liver, Mice, Inbred BALB C, Mice, Inbred C57BL, Mutation, Retina, Transduction, Genetic, Vitreous Body, Reassortant Viruses, Photoreceptor Cells, Vertebrate, Injections, Intraocular, HEK293 Cells
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