P-body formation is a consequence, not the cause, of RNA-mediated gene silencing

Cited by (710)

Items 101–200 of 710

1. The A rabidopsis tandem CCCH zinc finger proteins AtTZF4 , 5 and 6 are involved in light‐, abscisic acid‐ and gibberellic acid‐mediated regulation of seed germination
   Srimathi Bogamuwa, Jyan-Chyun Jang · 2013 · Plant Cell & Environment
2. Regulation of mRNA decapping
   You Li, Megerditch Kiledjian · 2010 · Wiley Interdisciplinary Reviews - RNA
3. Hsp90 Regulates the Function of Argonaute 2 and Its Recruitment to Stress Granules and P-Bodies
   Justin M. Pare, Nasser Tahbaz, Joaquín López-Orozco, Paul LaPointe, Paul F. Lasko, Tom C. Hobman · 2009 · Molecular Biology of the Cell
4. A Solid-State Conceptualization of Information Transfer from Gene to Message to Protein
   Masato Kato, Steven Lanier McKnight · 2017 · Annual Review of Biochemistry
5. Processing bodies and germ granules are distinct RNA granules that interact in C. elegans embryos
   Christopher M. Gallo, Edwin Munro, Dominique Rasoloson, Christopher Merritt, Géraldine Seydoux · 2008 · Developmental Biology
6. Eukaryotic mRNA Decay: Methodologies, Pathways, and Links to Other Stages of Gene Expression
   José Enrique Pérez-Ortín, Paula M. Alepuz, Sebastián Chávez, Mordechai Choder · 2013 · Journal of Molecular Biology
7. Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi
   Xuying Wang, Yen‐Ping Hsueh, Wenjun Li, Anna M. Floyd, Rebecca L. Skalsky, Joseph Heitman · 2010 · Genes & Development
8. A multifunctional human Argonaute2-specific monoclonal antibody
   Sabine Rüdel, Andrew Flatley, Lasse Weinmann, Elisabeth Kremmer, Gunter Meister · 2008 · RNA
9. RISC-target interaction: Cleavage and translational suppression
   Alysia L. vandenBerg, Johann Mols, J HAN · 2008 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
10. Multifunctional roles of the mammalian CCR4–NOT complex in physiological phenomena
    Yo-Taro Shirai, Toru Suzuki, Masahiro Morita, Akinori Takahashi, Tadashi S. Yamamoto · 2014 · Frontiers in Genetics
11. Translation and replication of hepatitis C virus genomic RNA depends on ancient cellular proteins that control mRNA fates
    Nicoletta Scheller, Leonardo Bruno Mina, Rui Pedro Galão, Ashwin Chari, Mireia Giménez‐Barcons, Amine O. Noueiry, Utz Fischer, Andreas Meyerhans, Juana Díez · 2009 · Proceedings of the National Academy of Sciences
12. MicroRNA: basic mechanisms and transcriptional regulatory networks for cell fate determination
    Francesco Fazi, Clara Nervi · 2008 · Cardiovascular Research
13. Structural and molecular mechanisms for the control of eukaryotic 5′–3′ mRNA decay
    Mugridge, Jeffrey S., Coller, Jeff, Gross, John D. · 2018 · Nature Structural & Molecular Biology
14. GW182 family proteins are crucial for microRNA-mediated gene silencing
    Lei Ding, Min Han · 2007 · Trends in Cell Biology
15. Kinetic signatures of microRNA modes of action
    Nadya Morozova, Andrei Y. Zinovyev, Nora Nonne, Linda-Louise Pritchard, Alexander N. Gorban, Annick Harel‐Bellan · 2012 · RNA
16. A C-terminal silencing domain in GW182 is essential for miRNA function
    Ana Eulálio, Sigrun Helms, Christoph Fritzsch, Maria Fauser, Elisa Izaurralde · 2009 · RNA
17. Non-coding RNAs: An Introduction
    Jennifer X. Yang, Raphael H. Rastetter, Dagmar Wilhelm · 2015 · Advances in experimental medicine and biology
18. Highly sensitive sequencing reveals dynamic modifications and activities of small RNAs in mouse oocytes and early embryos
    Qiyuan Yang, Jimin Lin, Miao Liu, Ronghong Li, Bin Tian, Xue Zhang, Beiying Xu, Mofang Liu, Xuan Zhang, Yiping Li et al. · 2016 · Science Advances
19. Role of p54 RNA Helicase Activity and Its C-terminal Domain in Translational Repression, P-body Localization and Assembly
    Nicola Minshall, Michel Kress, Dominique Barbieri-Weill, Nancy Standart · 2009 · Molecular Biology of the Cell
20. Regulation of stress granules and P‐bodies during RNA virus infection
    Richard E. Lloyd · 2013 · Wiley Interdisciplinary Reviews - RNA
21. RNP-Granule Assembly via Ataxin-2 Disordered Domains Is Required for Long-Term Memory and Neurodegeneration
    Baskar Bakthavachalu, Joern Huelsmeier, Indulekha P. Sudhakaran, Jens Hillebrand, Amanjot Singh, Arnas Petrauskas, Devasena Thiagarajan, M. Sankaranarayanan, Laura S. Mizoue, Eric Nathaniel Anderson et al. · 2018 · Neuron
22. Novel Staufen1 ribonucleoproteins prevent formation of stress granules but favour encapsidation of HIV-1 genomic RNA
    Levon G. Abrahamyan, Laurent Chatel‐Chaix, Lara Ajamian, Miroslav P. Milev, Anne Monette, Jean-François Clément, Rujun Song, Martin Lehmann, Luc DesGroseillers, Michael Laughrea et al. · 2010 · Journal of Cell Science
23. Human Ago2 Is Required for Efficient MicroRNA 122 Regulation of Hepatitis C Virus RNA Accumulation and Translation
    Joyce A. Wilson, Chao Zhang, Adam Huys, Christopher D. Richardson · 2010 · Journal of Virology
24. Drosophila patterning is established by differential association of mRNAs with P bodies
    Timothy T Weil, Richard M. Parton, Bram Herpers, Jan Soetaert, Tineke Veenendaal, Despina Xanthakis, Ian M. Dobbie, James M. Halstead, Rippei Hayashi, Cathérine Rabouille et al. · 2012 · Nature Cell Biology
25. The Role of GW182 Proteins in miRNA-Mediated Gene Silencing
    Joerg E. Braun, Eric Huntzinger, Elisa Izaurralde · 2012 · Advances in experimental medicine and biology
26. Relationship of GW/P-Bodies with Stress Granules
    Georg Stoecklin, Nancy Kedersha · 2012 · Advances in experimental medicine and biology
27. Dynamic Recruitment of Single RNAs to Processing Bodies Depends on RNA Functionality
    Sethuramasundaram Pitchiaya, Márcio Mourão, Ameya P. Jalihal, Lanbo Xiao, Xia Jiang, Arul M. Chinnaiyan, Santiago D. Schnell, Nils G. Walter · 2019 · Molecular Cell
28. Dual Regulation of miRNA Biogenesis Generates Target Specificity in Neurotrophin-Induced Protein Synthesis
    Yu‐Wen Alvin Huang, Claudia R. Ruiz, Elizabeth C.H. Eyler, Kathie Lin, Mollie K. Meffert · 2012 · Cell
29. Quantifying mRNA targeting to P bodies in living human cells reveals a dual role in mRNA decay and storage
    Adva Aizer, Alon Kalo, Pinhas Kafri, Amit Shraga, Rakefet Ben-Yishay, Avi Jacob, Noa Kinor, Yaron Shav‐Tal · 2014 · Journal of Cell Science
30. Maternal mRNAs are regulated by diverse P body–related mRNP granules during early Caenorhabditis elegans development
    Scott L. Noble, Brittany L. Allen-Petersen, Lai Kuan Goh, Kristen Nordick, Thomas C. Evans · 2008 · The Journal of Cell Biology
31. Derepression of MicroRNA-mediated Protein Translation Inhibition by Apolipoprotein B mRNA-editing Enzyme Catalytic Polypeptide-like 3G (APOBEC3G) and Its Family Members
    Jialing Huang, Zhi-Hui Liang, Bin Yang, Heng Tian, Jin Ma, Hui Zhang · 2007 · Journal of Biological Chemistry
32. The cAMP-Dependent Protein Kinase Signaling Pathway Is a Key Regulator of P Body Foci Formation
    Vidhya Ramachandran, Khyati H. Shah, Paul K. Herman · 2011 · Molecular Cell
33. Structural and functional control of the eukaryotic mRNA decapping machinery
    Marc Arribas-Layton, Donghui Wu, Jens Lykke‐Andersen, Haiwei Song · 2012 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
34. Viral miRNAs exploiting the endosomal–exosomal pathway for intercellular cross-talk and immune evasion
    Dirk Michiel Pegtel, Martijn D. B. van de Garde, Jaap Michiel Middeldorp · 2011 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
35. The 5′ → 3′ exoribonuclease XRN1/Pacman and its functions in cellular processes and development
    Christopher Iain Jones, Maria V. Zabolotskaya, Sarah Faith Newbury · 2012 · Wiley Interdisciplinary Reviews - RNA
36. A Systems-Level Study Reveals Regulators of Membrane-less Organelles in Human Cells.
    D. Berchtold, Nico Battich, L. Pelkmans · 2018 · Molecules and Cells
37. The Discovery and Analysis of P Bodies
    Saumya Jain, Roy Parker · 2012 · Advances in experimental medicine and biology
38. MicroRNAs, diet, and cancer: New mechanistic insights on the epigenetic actions of phytochemicals
    Mansi A. Parasramka, Emily Ho, David E. Williams, Roderick H. Dashwood · 2011 · Molecular Carcinogenesis
39. Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis
    Peter R. Boag, Arzu Atalay, Stacey Robida, V Reinke, T. Keith Blackwell · 2008 · The Journal of Cell Biology
40. Poliovirus-Mediated Disruption of Cytoplasmic Processing Bodies
    Jonathan D. Dougherty, James P. White, Richard E. Lloyd · 2010 · Journal of Virology
41. A stress assembly that confers cell viability by preserving ERES components during amino-acid starvation
    Margarita Zacharogianni, Angelica Aguilera-Gomez, Tineke Veenendaal, Jan Smout, Cathérine Rabouille · 2014 · eLife
42. Circular reasoning: microRNAs and cell-cycle control
    Raghu R. Chivukula, Joshua T. Mendell · 2008 · Trends in Biochemical Sciences
43. Ciphers and Executioners: How 3′-Untranslated Regions Determine the Fate of Messenger RNAs
    Vinay K. Mayya, Thomas F. Duchaîne · 2019 · Frontiers in Genetics
44. Potential Uses of MicroRNA in Lung Cancer Diagnosis, Prognosis, and Therapy
    Qi Zhao Wang, William Xu, Nagy Habib, Ruian Xu · 2009 · Current Cancer Drug Targets
45. Control of maternal mRNA stability in germ cells and early embryos
    Bridlin Barckmann, Martine Simonelig · 2013 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
46. Mitochondria Associate with P-bodies and Modulate MicroRNA-mediated RNA Interference
    Lue Huang, Stéphanie Mollet, Sylvie Souquère, Florence Le Roy, Michèle Ernoult‐Lange, Gérard Pierron, François Dautry, Dominique Barbieri-Weill · 2011 · Journal of Biological Chemistry
47. PAPI, a novel TUDOR-domain protein, complexes with AGO3, ME31B and TRAL in the nuage to silence transposition
    Li Liu, Hongying Qi, Jianquan Wang, Haifan Lin · 2011 · Development
48. MicroRNAs in rheumatoid arthritis
    Angela Ceribelli, Md A. Nahid, Minoru Satoh, Edward K. L. Chan · 2011 · FEBS Letters
49. MicroRNA Regulation of T-Lymphocyte Immunity: Modulation of Molecular Networks Responsible for T-Cell Activation, Differentiation, and Development
    Katie Podshivalova, Daniel R. Salomon · 2013 · Critical Reviews in Immunology
50. The Role of RNA in Biological Phase Separations
    Marta M. Fay, Paul Anderson · 2018 · Journal of Molecular Biology
51. Cytoplasmic mRNP granules at a glance
    Stacy L. Erickson, Jens Lykke‐Andersen · 2011 · Journal of Cell Science
52. BR-Bodies Provide Selectively Permeable Condensates that Stimulate mRNA Decay and Prevent Release of Decay Intermediates
    Nadra Al-Husini, Dylan T. Tomares, Zechariah J. Pfaffenberger, Nisansala S. Muthunayake, Mohammad Abdus Samad, Tiancheng Zuo, Obaidah Bitar, James R. Aretakis, Mohammed-Husain M. Bharmal, Alisa Gega et al. · 2020 · Molecular Cell
53. A genome-wide RNAi screen reveals that mRNA decapping restricts bunyaviral replication by limiting the pools of Dcp2-accessible targets for cap-snatching
    Kaycie C. Hopkins, Laura M. McLane, Tariq Maqbool, Debasis Panda, Beth Gordesky-Gold, Sara R. Cherry · 2013 · Genes & Development
54. Similar Modes of Interaction Enable Trailer Hitch and EDC3 To Associate with DCP1 and Me31B in Distinct Protein Complexes
    Felix Tritschler, Ana Eulálio, Sigrun Helms, Steffen Schmidt, M.P. Coles, Oliver Weichenrieder, Elisa Izaurralde, Vincent Truffault · 2008 · Molecular and Cellular Biology
55. The Arabidopsis Tandem Zinc Finger 9 Protein Binds RNA and Mediates Pathogen-Associated Molecular Pattern-Triggered Immune Responses
    Luis David Maldonado-Bonilla, Lennart Eschen‐Lippold, Selma Gago‐Zachert, Naheed Tabassum, Nicole Bauer, Dierk Scheel, Justin Lee · 2013 · Plant and Cell Physiology
56. Cells Lacking the Fragile X Mental Retardation Protein (FMRP) have Normal RISC Activity but Exhibit Altered Stress Granule Assembly
    Marie-Cécile Didiot, Murugan Subramanian, Eric Flatter, Jean‐Louis Mandel, Hervé Moine · 2008 · Molecular Biology of the Cell
57. Small noncoding RNAs: Biogenesis, function, and emerging significance in toxicology
    Supratim Choudhuri · 2010 · Journal of Biochemical and Molecular Toxicology
58. RNA granules: functional compartments or incidental condensates?
    Andrea Putnam, Laura L. Thomas, G. Seydoux · 2023 · Genes & Development
59. Role of GW182 proteins and PABPC1 in the miRNA pathway: a sense of déjà vu
    Felix Tritschler, Eric Huntzinger, Elisa Izaurralde · 2010 · Nature Reviews Molecular Cell Biology
60. Processing Body and Stress Granule Assembly Occur by Independent and Differentially Regulated Pathways in Saccharomyces cerevisiae
    Khyati H. Shah, Bo Zhang, Vidhya Ramachandran, Paul K. Herman · 2012 · Genetics
61. Cyclin B1 mRNA translation is temporally controlled through formation and disassembly of RNA granules
    Tomoya Kotani, Kyota Yasuda, Ryoma Ota, Masakane Yamashita · 2013 · The Journal of Cell Biology
62. Non-canonical features of microRNAs: paradigms emerging from cardiovascular disease
    Donato Santovito, Christian Weber · 2022 · Nature Reviews Cardiology
63. Genetic Analysis of theCaenorhabditis elegansGLH Family of P-Granule Proteins
    Caroline A. Spike, Nicole Meyer, Erica L. Racen, April Marie Orsborn, Jay Kirchner, Kathleen Kuznicki, Christopher W. Yee, Karen L. Bennett, Susan Strome · 2008 · Genetics
64. The role of miRNAs and endogenous siRNAs in maternal‐to‐zygotic reprogramming and the establishment of pluripotency
    Petr Svoboda, Matyáš Flemr · 2010 · EMBO Reports
65. siRNA Delivery: From Lipids to Cell‐penetrating Peptides and Their Mimics
    Matt Gooding, Lorcan Browne, Filipa M. Quinteiro, David L. Selwood · 2012 · Chemical Biology & Drug Design
66. Regulation of epithelial-mesenchymal transition and metastasis by TGF-β, P-bodies, and autophagy
    Shana D. Hardy, Aparna B. Shinde, Wen‐Horng Wang, Michael K. Wendt, Robert L. Geahlen · 2017 · Oncotarget
67. Composition and function of P bodies in Arabidopsis thaliana
    Luis David Maldonado-Bonilla · 2014 · Frontiers in Plant Science
68. Drosophila processing bodies in oogenesis
    Ming‐Der Lin, Xinfu Jiao, Dominic P. Grima, Sarah Faith Newbury, Megerditch Kiledjian, Tze-Bin Chou · 2008 · Developmental Biology
69. Multiple binding of repressed mRNAs by the P-body protein Rck/p54
    Michèle Ernoult‐Lange, Sonia Baconnais, Maryannick Harper, Nicola Minshall, Sylvie Souquère, Thomas Boudier, Marianne Bénard, Philippe Andrey, Gérard Pierron, Michel Kress et al. · 2012 · RNA
70. The role of the CNOT1 subunit of the CCR4-NOT complex in mRNA deadenylation and cell viability
    Kentaro Ito, Akinori Takahashi, Masahiro Morita, Toru Suzuki, Tadashi S. Yamamoto · 2011 · Protein & Cell
71. A Divergent Sm Fold in EDC3 Proteins Mediates DCP1 Binding and P-Body Targeting
    Felix Tritschler, Ana Eulálio, Vincent Truffault, Marcus D. Hartmann, Sigrun Helms, Steffen Schmidt, M.P. Coles, Elisa Izaurralde, Oliver Weichenrieder · 2007 · Molecular and Cellular Biology
72. RNP Granule Formation: Lessons from P-Bodies and Stress Granules
    Giulia Ada Corbet, Roy Parker · 2019 · Cold Spring Harbor Symposia on Quantitative Biology
73. Conserved RNaseII domain protein functions in cytoplasmic mRNA decay and suppresses Arabidopsis decapping mutant phenotypes
    Weiping Zhang, Caroline Murphy, Leslie Sieburth · 2010 · Proceedings of the National Academy of Sciences
74. Formation of Potato Virus A-Induced RNA Granules and Viral Translation Are Interrelated Processes Required for Optimal Virus Accumulation
    Anders Hafrén, Andres Lõhmus, Kristiina M. Mäkinen · 2015 · PLoS Pathogens
75. Human 4E-T represses translation of bound mRNAs and enhances microRNA-mediated silencing
    Anastasiia Kamenska, Wei-Ting Lu, Dorota Kubacka, Helen E. Broomhead, Nicola Minshall, Martin Bushell, Nancy Standart · 2013 · Nucleic Acids Research
76. c-Jun N-terminal kinase phosphorylates DCP1a to control formation of P bodies
    Katharina Rzeczkowski, Knut Beuerlein, Helmut Müller, Oliver Dittrich‐Breiholz, Heike Schneider, Daniela Kettner-Buhrow, Helmut Holtmann, Michael Kracht · 2011 · The Journal of Cell Biology
77. The Role of MicroRNAs in Viral Infection
    Ashley P. E. Roberts, Andrew Lewis, Catherine L. Jopling · 2011 · Progress in molecular biology and translational science
78. Processing bodies are not required for mammalian nonsense-mediated mRNA decay
    Lukas Stalder, Oliver Mühlemann · 2009 · RNA
79. Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes
    Tobias Brandmann, Hana Fakim, Zoya Padamsi, Ji‐Young Youn, Anne‐Claude Gingras, Marc Robert Fabian, Martin Jínek · 2018 · The EMBO Journal
80. RNAi and antiviral defense in Drosophila: Setting up a systemic immune response
    Margot Karlikow, Bertsy Goić, Maria‐Carla Saleh · 2013 · Developmental & Comparative Immunology
81. The novel gene twenty-four defines a critical translational step in the Drosophila clock
    Chunghun Lim, Jongbin Lee, Changtaek Choi, Valerie L. Kilman, Juwon Kim, Sung Mi Park, Sung Key Jang, Ravi Allada, Joonho Choe · 2011 · Nature
82. Traffic into silence: endomembranes and post‐transcriptional RNA silencing
    Yun Ju Kim, Alexis Maizel, Xuemei Chen · 2014 · The EMBO Journal
83. Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny
    Christelle Morris, D. Cluet, E. Ricci · 2021 · Wiley Interdisciplinary Reviews - RNA
84. microRNA Biogenesis and Function
    René F. Ketting · 2010 · Advances in experimental medicine and biology
85. How and where are nonsense mRNAs degraded in mammalian cells?
    Oliver Mühlemann, Jens Lykke‐Andersen · 2010 · RNA Biology
86. RNA Granules: A View from the RNA Perspective
    Si-Ran Tian, Harrison A Curnutte, Tatjana Trcek · 2020 · Molecules
87. The Regulatory Properties of the Ccr4–Not Complex
    Nafiseh Chalabi Hagkarim, Roger J.A. Grand · 2020 · Cells
88. The 3′ Untranslated Region of Sindbis Virus Represses Deadenylation of Viral Transcripts in Mosquito and Mammalian Cells
    Nicole L. Garneau, Kevin J. Sokoloski, Mateusz Opyrchal, Charles Preston Neff, Carol J. Wilusz, Jeffrey Wilusz · 2007 · Journal of Virology
89. Viral Regulation of RNA Granules in Infected Cells
    Qiang Zhang, Nishi Raj Sharma, Zhi‐Ming Zheng, Mingzhou Chen · 2019 · Virologica Sinica
90. Cell stress is related to re-localization of Argonaute 2 and to decreased RNA interference in human cells
    Detzer, Anke, Engel, Christina, Wünsche, Winfried, Sczakiel, Georg · 2011 · Nucleic Acids Research
91. HPat provides a link between deadenylation and decapping in metazoa
    Gabrielle Haas, Joerg E. Braun, Cátia Igreja, Felix Tritschler, Tadashi Nishihara, Elisa Izaurralde · 2010 · The Journal of Cell Biology
92. Translational control mechanisms in metabolic regulation: critical role of RNA binding proteins, microRNAs, and cytoplasmic RNA granules.
    K. Adeli · 2011 · American Journal of Physiology. Endocrinology and Metabolism
93. Subcellular Heterogeneity of the microRNA Machinery
    Michèle Trabucchi, Raphaël Matégot · 2018 · Trends in Genetics
94. The interferon stimulated gene 20 protein (ISG20) is an innate defense antiviral factor that discriminates self versus non-self translation
    Nannan Wu, Xuan-Nhi Nguyen, Li Wang, Romain Appourchaux, Chengfei Zhang, Baptiste Panthu, Henri Gruffat, Chloé Journo, Sandrine Alais, Juliang Qin et al. · 2019 · PLoS Pathogens
95. New Insights into the Regulation of RNP Granule Assembly in Oocytes
    Jennifer A Schisa · 2012 · International review of cytology
96. Post-Transcriptional Trafficking and Regulation of Neuronal Gene Expression
    Belinda J. Goldie, Murray J. Cairns · 2011 · Molecular Neurobiology
97. MicroRNAs and Toll-like Receptor/Interleukin-1 Receptor Signaling
    Anthony T. Virtue, Hong Wang, Xiaofeng Yang · 2012 · Journal of Hematology & Oncology
98. Roles of R2D2, a Cytoplasmic D2 Body Component, in the Endogenous siRNA Pathway in Drosophila
    Nishida, Kazumichi M., Miyoshi, Keita, Ogino, Akiyo, Miyoshi, Tomohiro, Siomi, Haruhiko, Siomi, Mikiko C. · 2013 · Molecular Cell
99. The DHH1/RCKp54 family of helicases: An ancient family of proteins that promote translational silencing
    Vladimir Presnyak, Jeff Coller · 2013 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
100. Aberrant Phase Transitions: Side Effects and Novel Therapeutic Strategies in Human Disease
     Veronica Verdile, Elisa De Paola, Maria Paola Paronetto · 2019 · Frontiers in Genetics