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Stress Genes and Proteins in the Archaea
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“Because the nucleotide sequence encoding the prokaryotic small subunit rRNA (SSU or 16S rRNA) is particularly useful for inferring phylogenetic relationships at the genus and higher taxonomic levels, it has become the standard for studies of bacterial diversity (Rosselló-Mora and Amann, 2001; Stackebrandt and Rainey,…”
BackgroundGene Transfer in Bacteria: Speciation without Species?
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“The sequences of universally distributed rRNA loci even provided a framework for inferring relationships among all Bacteria, Archaea, and Eukaryotes (Fox et al., 1980; Woese, 1987, 1991; Olsen and Woese, 1993).”
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The Ecology and Genetics of Microbial Diversity
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The nineteenth century roots of 'everything is everywhere'
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Taxonomy annotation and guide tree errors in 16S rRNA databases
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“it has historically been used for classification of isolates [4], and more recently in complex samples coming from a variety of environments, such as the human gut [5], soil [6], and oceans [7] where it can also be used to determine the bacterial number and composition of samples.”
Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections
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Endocytosis-like protein uptake in the bacterium Gemmata obscuriglobus
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The burgeoning molecular genetics of the Lyme disease spirochaete
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Forces and factors that contribute to the structural stability of membrane proteins
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Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing
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Self-splicing introns in tRNA genes of widely divergent bacteria
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The Glutamine Synthetases of Rhizobia: Phylogenetics and Evolutionary Implications
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In situ characterization of the microbial consortia active in two wastewater treatment plants
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The origin of the eukaryotic cell
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Genome Diversity of Spore-Forming Firmicutes
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How big is the iceberg of which organellar genes in nuclear genomes are but the tip?
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“In a strong rejoinder, Woese et al. (1980) dismissed this interpretation (although Woese and Fox had always endorsed LGT as a major force in early cell evolution (Woese 1987)).”
BackgroundAnthony, R. M., Brown, T., & French, G. L. (2000) · Journal of Clinical Microbiology · doi:10.1128/jcm.38.2.781-788.2000 · Cited by 211
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C OMPLEX E VOLUTION OF P HOTOSYNTHESIS
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Achievements and new knowledge unraveled by metagenomic approaches
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“Usually, phylogenetic relationships are determined by analysis of conserved ribosomal RNA (rRNA) gene sequences (Woese 1987).”
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“There is controversy over whether the first life forms were hyperthermophiles (Woese 1987; Pace 1991; Nisbet and Fowler 1996; Yamagishi et al. 1998) or not (Miller and Lazcano 1995; Forterre 1996; Galtier et al. 1999).”
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“Ribosomal RNA phylogenetics are exhaustively described elsewhere (Amann et al., 1995; Lane et al., 1985; Pace, 1997; Woese, 1987).”
Proposal to restrict the genus Clostridium Prazmowski to Clostridium butyricum and related species
Lawson, P. A., & Rainey, F. A. (2015) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.000824 · Cited by 208
“Johnson & Francis (1975) began to pioneer molecular insights into the considerable diversity within the genus using DNA–rRNA pairing, this was later expanded using 16S rRNA oligonucleotide cataloguing studies (Ludwig et al., 1988; Stackebrandt, 1992; Tanner et al., 1981; Woese, 1987).”
Thermoadaptation of methanogenic bacteria by intracellular ion concentration
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Photosynthetic reaction center genes in green sulfur bacteria and in photosystem 1 are related.
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Evolution of Cyanobacteria by Exchange of Genetic Material among Phyletically Related Strains
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Bacterial Community Structure and Diversity in a Century-Old Manure-Treated Agroecosystem
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Natural relationships among sulfate-reducing eubacteria
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Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria)
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A survey of the methods for the characterization of microbial consortia and communities
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“Namely, rRNA coding sequences are among the most highly conserved, are present in high copy numbers in the cell, are ubiquitous, and are absolutely essential to all cellular functions (Woese 1987).”
BackgroundInfluentialProkaryotic taxonomy and nomenclature in the age of big sequence data
Hugenholtz, P., Chuvochina, M. S., Oren, A., Parks, D. H., & Soo, R. M. (2021) · The ISME Journal · doi:10.1038/s41396-021-00941-x · Cited by 225
“The combination of these properties make small subunit rRNAs useful molecular clocks with both an hour and minute hand to measure ancient and more recent relationships [21 – 24].”
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Woese, C. R., Achenbach, L. A., Rouvière, P. E., & Mandelco, L. (1991) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(11)80311-5 · Cited by 206
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Bacterial Diversity in Agricultural Soils during Litter Decomposition
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Metadata
- Authors
- Woese, C. R.
- Corresponding author
- Woese, C R
- Venue
- Microbiological Reviews
- Publisher
- American Society for Microbiology
- Published
- 1987-06
- Volume
- 51
- Issue
- 2
- Pages
- 221-271
- ISSN
- 0146-0749 (ISSN-L)
- PMC
- PMC373105
- OpenAlex
- W4211022623
- Cited by
- 5,042
- References
- 2
- Citations by year
- 2026: 31 · 2025: 74 · 2024: 61 · 2023: 71 · 2022: 79 · 2021: 101 · 2020: 77 · 2019: 100 · 2018: 111 · 2017: 92 · 2016: 93 · 2015: 111 · 2014: 165 · 2013: 114 · 2012: 113
- FWCI
- 99.34
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Microbiological Reviews (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- bacterial evolution, bacterial phylogeny, bacterial diversity
- MeSH terms
- Bacteria, Base Sequence, Biological Evolution, Phylogeny, RNA, Bacterial, RNA, Ribosomal
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