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Molecular Phylogeny of Metazoa (Animals): Monophyletic Origin
M�ller, W. E. G. (1995) · Die Naturwissenschaften · doi:10.1007/bf01131528 · Cited by 169
Wu, J., Kun, Y., Zhang, F. F., & Chen, F. S. (2011) · Food Microbiology · doi:10.1016/j.fm.2011.08.010 · Cited by 169
Do microorganisms influence seed-bank dynamics?
Chee‐Sanford, J. C., Williams, M., Davis, A. S., & Sims, G. K. (2006) · Weed Science · doi:10.1614/ws-05-055r.1 · Cited by 168
Cameron, K. A., Hodson, A., & Osborn, A. M. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01277.x · Cited by 167
Ueno, Y., Yoshioka, H., Maruyama, S., & Isozaki, Y. (2004) · Geochimica et Cosmochimica Acta · doi:10.1016/s0016-7037(03)00462-9 · Cited by 170
Comparative biochemistry of Archaea and Bacteria
Zillig, W. (1991) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(05)80206-0 · Cited by 167
Archaic chaos: intrinsically disordered proteins in Archaea
Xue, B., Williams, R. W., Oldfield, C. J., Dunker, A. K., & Uversky, V. N. (2010) · BMC Systems Biology · doi:10.1186/1752-0509-4-s1-s1 · Cited by 166
Muñoz, R., Rossello-Mora, R. A., & Amann, R. (2016) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2016.04.004 · Cited by 166
Vainshtein, M. B., Hippe, H., & Kroppenstedt, R. M. (1992) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(11)80115-3 · Cited by 166
Klotz, M. G. (2003) · Molecular Biology and Evolution · doi:10.1093/molbev/msg129 · Cited by 169
“…an accession number (GenBank or the relevant genome project) related to the source organisms, which have been organized alphabetically in phylogenetic groups using rDNA similarities (Woese 1987; Olsen, Woese, and Overbeek 1994) and the taxonomic system proposed by Cavalier-Smith (2002a, 2002b).”
MethodCompilation of 5S rRNA and 5S rRNA gene sequences
Specht, T., Wolters, J., & Erdmann, V. A. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.suppl.2215 · Cited by 166
Gasparich, G. E., Whitcomb, R. F., Dodge, D. E., French, F. E., Glass, J. I., & Williamson, D. L. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.02688-0 · Cited by 165
“The general phylogenetic position of the genus Spiroplasma was determined as a result of the pioneering work of Carl Woese and his associates [summarized by Woese (1987)], which utilized 16S rRNA for the study of prokaryote phylogeny.”
BackgroundMicrobial technologies for the discovery of novel bioactive metabolites
Donadio, S., Monciardini, P., Alduina, R., Mazza, P., Chiocchini, C., Cavaletti, L., Sosio, M., & Puglia, A. M. (2002) · Journal of Biotechnology · doi:10.1016/s0168-1656(02)00209-2 · Cited by 165
Sulfur, ultraviolet radiation, and the early evolution of life
Kasting, J. F., Zahnle, K. J., Pinto, J. P., & Young, A. T. (1989) · Origins of life and evolution of the biosphere · doi:10.1007/bf01808144 · Cited by 164
Mosaic Origin of the Heme Biosynthesis Pathway in Photosynthetic Eukaryotes
Obornı́k, M., & Green, B. R. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi230 · Cited by 164
The microbiome and obesity: Is obesity linked to our gut flora?
Tsai, F., & Coyle, W. (2009) · Current Gastroenterology Reports · doi:10.1007/s11894-009-0045-z · Cited by 166
Life: past, present and future
Nealson, K. H., & Conrad, P. G. (1999) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.1999.0532 · Cited by 162
Hassler, H. B., Probert, B., Moore, C. P., Lawson, E., Jackson, R. W., Russell, B. T., & Richards, V. P. (2022) · Microbiome · doi:10.1186/s40168-022-01295-y · Cited by 191
Evolutionary primacy of sodium bioenergetics
Mulkidjanian, A. Y., Galperin, M. Y., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2008) · Biology Direct · doi:10.1186/1745-6150-3-13 · Cited by 163
Pursuing Human-Relevant Gut Microbiota-Immune Interactions
Spencer, S. P., Fragiadakis, G. K., & Sonnenburg, J. L. (2019) · Immunity · doi:10.1016/j.immuni.2019.08.002 · Cited by 167
“…and loop structural units, provide excellent sites from primer annealing and slowly evolving regions, respectively, enable identification of bacteria by PCR-enabled sequencing— generally providing phylogenetic resolution to the genus level(Fox et al., 1977; Hugenholtz and Pace, 1996; Woese, 1987).”
BackgroundCyanobacteria: Model Microorganisms and Beyond
Allaf, M. M., & Peerhossaini, H. (2022) · Microorganisms · doi:10.3390/microorganisms10040696 · Cited by 168
“The cell wall composition of cyanobacteria is a specific group of Gram-negative bacteria [36] with a thin layer of peptidoglycan [37] and lipopolysaccharide outer membrane Figure 3.”
BackgroundEcology and evolution of bacterial microdiversity: Table 1
Schloter, M., Lebuhn, M., Heulin, T., & Hartmann, A. (2000) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2000.tb00564.x · Cited by 161
Rainey, F. A., Dorsch, M., Morgan, H. W., & Stackebrandt, E. S. (1992) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(11)80092-5 · Cited by 163
Board-invited review: Rumen microbiology: Leading the way in microbial ecology1,2
Krause, D. O., Nagaraja, T. G., Wright, A.-D. G., & Callaway, T. R. (2013) · Journal of Animal Science · doi:10.2527/jas.2012-5567 · Cited by 162
Deep phylogeny, ancestral groups and the four ages of life
Cavalier‐Smith, T. (2009) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2009.0161 · Cited by 162
“Both stasis and change are needed to explain the patterns of similarity and difference that enable hierarchical Linnean classification.”
BackgroundThe gut microbiome of nonhuman primates: Lessons in ecology and evolution
Clayton, J. B., Gomez, A. M., Amato, K. R., Knights, D., Travis, D. A., Blekhman, R., Knight, R. D., Leigh, S. R., Stumpf, R. M., Wolf, T. M., et al. (2018) · American Journal of Primatology · doi:10.1002/ajp.22867 · Cited by 168
“In the late 1970s, Carl Woese and George E. Fox pioneered the use of 16S rRNA in phylogenetics, and ultimately discovered a newdomain of life, archaebacteria (Woese, 1987;Woese, Kandler, & Wheelis, 1990).”
BackgroundMethodA review on the applications and recent advances in environmental DNA (eDNA) metagenomics
Garlapati, D., Charankumar, B., Ramu, K., Madeswaran, P., & Murthy, M. V. R. (2019) · Reviews in Environmental Science and Bio/Technology · doi:10.1007/s11157-019-09501-4 · Cited by 168
“Experimental advances changed the way we visualize the microbial world, further from the works of Carl Woese, it became evident that rRNA is responsible for evolutionary chronometers (Woese 1987).”
BackgroundLiebl, U., Mockensturm-Wilson, M., Trost, J. T., Brune, D. C., Blankenship, R. E., & Vermaas, W. F. J. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.15.7124 · Cited by 162
Early evolution of photosynthesis: clues from nitrogenase and chlorophyll iron proteins.
Burke, D. H., Hearst, J. E., & Sidow, A. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.15.7134 · Cited by 162
Holo, H. (1989) · Archives of Microbiology · doi:10.1007/bf00413138 · Cited by 162
Lin, J., & Gerstein, M. (2000) · Genome Research · doi:10.1101/gr.10.6.808 · Cited by 161
“Traditionally, microorganisms have been grouped together into trees based on the sequence similarity of small subunit ribosomal RNA (SSU rRNA) (Woese et al. 1990; Woese 1987).”
BackgroundComparative Analysis of Myxococcus Predation on Soil Bacteria
Morgan, A. D., MacLean, R. C., Hillesland, K. L., & Velicer, G. J. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00414-10 · Cited by 162
Makarova, K. S., Ponomarev, V. A., & Koonin, E. V. (2001) · Genome biology · doi:10.1186/gb-2001-2-9-research0033 · Cited by 161
North, A. K., Klose, K. E., Stedman, K. M., & Kustu, S. G. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.14.4267-4273.1993 · Cited by 161
Pond, M. J., Stone, D. M., & Alderman, D. J. (2006) · Aquaculture · doi:10.1016/j.aquaculture.2006.06.037 · Cited by 160
RIDOM: Comprehensive and public sequence database for identification of Mycobacteriumspecies
Harmsen, D., Dostal, S., Roth, A. J., Niemann, S., Rothgänger, J., Sammeth, M., Albert, J., Frosch, M., & Richter, E. (2003) · BMC Infectious Diseases · doi:10.1186/1471-2334-3-26 · Cited by 160
bcgTree: automatized phylogenetic tree building from bacterial core genomes
Ankenbrand, M. J., & Keller, A. (2016) · Genome · doi:10.1139/gen-2015-0175 · Cited by 167
The Ocular Microbiome: Molecular Characterisation of a Unique and Low Microbial Environment
Ozkan, J., & Willcox, M. D. P. (2019) · Current Eye Research · doi:10.1080/02713683.2019.1570526 · Cited by 162
“The 16S ribosomal(r) RNA gene is the standard in prokaryotic community sampling.(8) This method permits the entire microbial community to be characterised and also defines the relative abundance of these communities spatially and temporally.”
MethodThe origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?
Gribaldo, S., Poole, A. M., Daubin, V., Forterre, P., & Brochier‐Armanet, C. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2426 · Cited by 173
Gutu, A., & Kehoe, D. M. (2011) · Molecular Plant · doi:10.1093/mp/ssr054 · Cited by 156
Bavykin, S. G., Lysov, Y., Zakhariev, V. M., Kelly, J. J., Jackman, J., Stahl, D. A., & Cherni, A. (2004) · Journal of Clinical Microbiology · doi:10.1128/jcm.42.8.3711-3730.2004 · Cited by 159
Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer
Ward, L. M., Hemp, J., Shih, P. M., McGlynn, S. E., & Fischer, W. W. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00260 · Cited by 166
“It was hypothesized that photosynthesis was present in the last common ancestor of all bacteria (Woese et al., 1985; Woese, 1987) or a broad clade containing all extant phototrophs (Cardona, 2016), followed by extensive loss in most lineages; however, this idea remains controversial.”
Homology throughout the multiple 32-kilobase circular plasmids present in Lyme disease spirochetes
Casjens, S., van Vugt, R., Tilly, K., Rosa, P. A., & Stevenson, B. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.1.217-227.1997 · Cited by 159
Derakshani, M., Lukow, T., & Liesack, W. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.2.623-631.2001 · Cited by 159
A Comprehensive Species to Strain Taxonomic Framework forXanthomonas
Rademaker, J. L. W., Louws, F. J., Schultz, M. H., Rossbach, U., Vauterin, L., Swings, J., & de Bruijn, F. J. (2005) · Phytopathology · doi:10.1094/phyto-95-1098 · Cited by 159
Davidov, Y., & Jurkevitch, É. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.02978-0 · Cited by 159
“, 2000), which are affiliated with the d-Proteobacteria (Woese, 1987).”
BackgroundResultEvolution of the cytochrome P450 superfamily: sequence alignments and pharmacogenetics
Lewis, D. F. V., Watson, E., & Lake, B. G. (1998) · Mutation Research/Reviews in Mutation Research · doi:10.1016/s1383-5742(97)00040-9 · Cited by 160
Critical Issues in Bacterial Phylogeny
Gupta, R. S., & Griffiths, E. (2002) · Theoretical Population Biology · doi:10.1006/tpbi.2002.1589 · Cited by 158
“…colleagues using 16S rRNA sequences led to the suggestion that the prokaryotic organisms are of two different kinds, archaebacteria (or Archaea) and eubacteria (or Bacteria), which are distinct from each other and originated independently from a universal ancestor (Fox et al., 1980; Woese, 1987).”
BackgroundMethodInfluentialIkenaga, M., Guevara, R., Dean, A. L., Pisani, C., & Boyer, J. N. (2009) · Microbial Ecology · doi:10.1007/s00248-009-9572-2 · Cited by 158
Kaltenboeck, B., Kousoulas, K. G., & Storz, J. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.2.487-502.1993 · Cited by 159
Vergin, K. L., Urbach, E., Stein, J. L., DeLong, E. F., Lanoil, B., & Giovannoni, S. J. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.8.3075-3078.1998 · Cited by 158
Nasmyth, K. (1995) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.1995.0113 · Cited by 159
Pneumocystis carinii organisms derived from rat and human hosts are genetically distinct
Sinclair, K., Wakefield, A. E., Banerji, S., & Hopkin, J. M. (1991) · Molecular and Biochemical Parasitology · doi:10.1016/0166-6851(91)90042-5 · Cited by 158
Matsuki, T., Watanabe, K., Tanaka, R., & Oyaizu, H. (1998) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1998.tb13216.x · Cited by 153
Tetraponeraants have gut symbionts related to nitrogen–fixing root–nodule bacteria
Borm, S. V., Buschinger, A., Boomsma, J. J., & BILLEN, J. P. J. (2002) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2002.2101 · Cited by 157
Eubacterial phylogeny based on translational apparatus proteins
Brochier‐Armanet, C., Bapteste, E. P., Moreira, D., & Philippe, H. (2002) · Trends in Genetics · doi:10.1016/s0168-9525(01)02522-7 · Cited by 157
AMPLIFICATION OF RIBOSOMAL RNA GENES FOR MOLECULAR EVOLUTION STUDIES
Sogin, M. L. (1990) · Elsevier eBooks · doi:10.1016/b978-0-12-372180-8.50041-x · Cited by 155
Polyamines As A Chemotaxonomic Marker in Bacterial Systematics
Hamana, K., & Matsuzaki, S. (1992) · Critical Reviews in Microbiology · doi:10.3109/10408419209113518 · Cited by 156
Reeves, A. R., D'Elia, J. N., Frías, J., & Salyers, A. A. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.3.823-830.1996 · Cited by 156
Two Distinct Mechanisms Cause Heterogeneity of 16S rRNA
Ueda, K., Seki, T., Kudo, T., Yoshida, T., & Kataoka, M. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.1.78-82.1999 · Cited by 157
Dibiphytanyl Ether Lipids in Nonthermophilic Crenarchaeotes
DeLong, E. F., King, L. L., Massana, R., Cittone, H., Murray, A. E., Schleper, C., & Wakeham, S. G. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.3.1133-1138.1998 · Cited by 156
Tsetse – A Haven for Microorganisms
Aksoy, S. (2000) · Parasitology Today · doi:10.1016/s0169-4758(99)01606-3 · Cited by 156
Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor
Douglas, S. E., & Turner, S. D. (1991) · Journal of Molecular Evolution · doi:10.1007/bf02100678 · Cited by 155
Gene transfer is a major factor in bacterial evolution
Lan, R., & Reeves, P. R. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025569 · Cited by 155
Chèneby, D., Philippot, L., Hartmann, A., Hénault, C., & Germon, J. C. (2000) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2000.tb00761.x · Cited by 154
Physiological, Biochemical and Genetic Control of Bacterial Bioluminescence
Meighen, E. A., & Dunlap, P. V. (1993) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/s0065-2911(08)60027-2 · Cited by 154
Molecular Evidence for Novel Planctomycete Diversityin a Municipal Wastewater TreatmentPlant
Chouari, R., Paslier, D. L., Daegelen, P., Ginestet, P., Weissenbach, J., & Sghir, A. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.12.7354-7363.2003 · Cited by 153
Marchandin, H., Teyssier, C., Campos, J., Jean‐Pierre, H., Roger, F., Gay, B., Carlier, J.-P., & Jumas‐Bilak, E. (2009) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.013102-0 · Cited by 153
Eukaryogenesis and oxygen in Earth history
Mills, D. B., Boyle, R. A., Daines, S. J., Sperling, E. A., Pisani, D., Donoghue, P. C. J., & Lenton, T. M. (2022) · Nature Ecology & Evolution · doi:10.1038/s41559-022-01733-y · Cited by 156
“In the mid-1980s, an origin of mitochondria from within the α -proteobacteria was proposed based on mitochondrial 16S ribosomal RNA (rRNA) sequences 155,156 , a view that quickly became the consensus 154 .”
Thermophilic Fe(III)-Reducing Bacteria from the Deep Subsurface: The Evolutionary Implications
Liu, S. V., Zhou, J., Zhang, C.-L. L., Cole, D., Gajdarziska-Josifovska, M., & Phelps, T. (1997) · Science · doi:10.1126/science.277.5329.1106 · Cited by 156
What are antibiotics? Archaic functions for modern activities
DAVIES, J. E. (1990) · Molecular Microbiology · doi:10.1111/j.1365-2958.1990.tb00701.x · Cited by 157
The Urgent Need for Robust Coral Disease Diagnostics
Pollock, F. J., Morris, P. J., Willis, B. L., & Bourne, D. G. (2011) · PLoS Pathogens · doi:10.1371/journal.ppat.1002183 · Cited by 159
Davies, C. E., Hill, K. E., Wilson, M. J., Stephens, P., Hill, C., Harding, K. G., & Thomas, D. W. (2004) · Journal of Clinical Microbiology · doi:10.1128/jcm.42.8.3549-3557.2004 · Cited by 152
“Although the sequences derived from the DGGE-PCR cloning of products of such small size is insufficient to allow great precision in the construction of phylogenetic trees, it does allow for a presumptive identification at least to genus level (54).”
BackgroundHipp, W. M., Pott-Sperling, A. S., Thum-Schmitz, N., Faath, I., Dahl, C., & Trüper, H. G. (1997) · Microbiology · doi:10.1099/00221287-143-9-2891 · Cited by 152
Metadata
- Authors
- Woese, C. R.
- Corresponding author
- Woese, C R
- Venue
- Microbiological Reviews
- Publisher
- American Society for Microbiology
- Published
- 1987-06
- Volume
- 51
- Issue
- 2
- Pages
- 221-271
- ISSN
- 0146-0749 (ISSN-L)
- PMC
- PMC373105
- OpenAlex
- W4211022623
- Cited by
- 5,042
- References
- 2
- Citations by year
- 2026: 31 · 2025: 74 · 2024: 61 · 2023: 71 · 2022: 79 · 2021: 101 · 2020: 77 · 2019: 100 · 2018: 111 · 2017: 92 · 2016: 93 · 2015: 111 · 2014: 165 · 2013: 114 · 2012: 113
- FWCI
- 99.34
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Microbiological Reviews (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- bacterial evolution, bacterial phylogeny, bacterial diversity
- MeSH terms
- Bacteria, Base Sequence, Biological Evolution, Phylogeny, RNA, Bacterial, RNA, Ribosomal
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