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Rice Sheath Rot: An Emerging Ubiquitous Destructive Disease Complex
Bigirimana, V. D. P., Hua, G. K. H., Nyamangyoku, O. I., & Höfte, M. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.01066 · Cited by 112
“In their work, they defined, based on the guidelines for the taxonomy of Proteobacteria, originally called purple bacteria (Woese, 1987), four main groups of Gammaproteobacteria associated with rice sheath rot and grain discoloration named after the representative species: P. putida, P. aeruginosa,…”
BackgroundPolyphasic taxonomy of acetic acid bacteria: An overview of the currently applied methodology
Cleenwerck, I., & Vos, P. D. (2008) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2007.04.017 · Cited by 112
Molecular Epidemiology and Association of Putative Pathogens in Root Canal Infection
Jung, I., CHOI, B., Kum, K., Roh, B., Lee, S., Lee, C.-K., & Park, D. H. (2000) · Journal of Endodontics · doi:10.1097/00004770-200010000-00006 · Cited by 112
What does the future hold for clinical microbiology?
Raoult, D., Fournier, P., & Drancourt, M. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro820 · Cited by 112
Forterre, P., Brochier‐Armanet, C., & Philippe, H. (2002) · Theoretical Population Biology · doi:10.1006/tpbi.2002.1592 · Cited by 123
“The discovery, by Woese and colleagues in the 1970s, that three ribosome forms are present in living organisms initiated a revolution in evolutionary biology (Woese and Fox, 1977; Woese, 1987; Woese et al., 1990).”
BackgroundCooper, D. M., Swanson, D. L., & Gebhart, C. J. (1997) · Veterinary Microbiology · doi:10.1016/s0378-1135(96)01264-3 · Cited by 112
Christensen, H. K., Kuhnert, P., Olsen, J. E., & Bisgaard, M. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.03018-0 · Cited by 112
“Classification based on 16S rRNA gene sequences has provided the background for modern prokaryotic systematics (Woese, 1987; Garrity & Holt, 2001; Ludwig & Klenk, 2001) and congruence is expected when other well-conserved genes are used for phylogenetic analysis.”
Phylogenetic Inferences from Molecular Sequences: Review and Critique
Brocchieri, L. (2001) · Theoretical Population Biology · doi:10.1006/tpbi.2000.1485 · Cited by 112
Evolutionary variation in bacterial RNase P RNAs
Haas, E. S. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.18.4093 · Cited by 112
Ovrutsky, A. R., Chan, E. D., Kartalija, M., Bai, X., Jackson, M., Gibbs, S., Falkinham, J. O., Iseman, M. D., Reynolds, P. R., McDonnell, G. E., et al. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.03823-12 · Cited by 111
The Tree of Life: Metaphor, Model, and Heuristic Device
Mindell, D. P. (2013) · Systematic Biology · doi:10.1093/sysbio/sys115 · Cited by 111
“…of molecular sequencing and orthologous gene sets for organismal groups in the 1960s and 1970s, efforts to reconstruct phylogeny for all known life forms in a universal tree with bifurcating or multifurcating branching diagrams came to be associated with the tree of life (ToL) (e.g., Woese 1987).”
Clark, C. M., Costa, M., Sanchez, L. M., & Murphy, B. T. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1801247115 · Cited by 111
“Four plipastatin (1-4) and three surfactin (5-7) analogs, including their resolved isotopes and adducts, were detected from strain 3610 and not from PY79, while both strains shared the ability to produce partially characterized polyglutamate polymers, which have been implicated in speciesspecific functions such as vir…”
BackgroundGaby, J. C., Rishishwar, L., Valderrama-Aguirre, L. C., Green, S. J., Valderrama-Aguirre, A., Jordan, I. K., & Kostka, J. E. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.01512-17 · Cited by 111
Gustafson, J. E., Strässle, A., Hächler, H., Kayser, F. H., & Berger‐Bächi, B. (1994) · Journal of Bacteriology · doi:10.1128/jb.176.5.1460-1467.1994 · Cited by 111
rpoB sequence-based identification of Mycobacterium avium complex species
Salah, I. B., Adékambi, T., Raoult, D., & Drancourt, M. (2008) · Microbiology · doi:10.1099/mic.0.2008/020164-0 · Cited by 111
“16S rDNA amplification and sequencing were done using the primer pair fd1–Rp2 (Woese, 1987).”
MethodMolecular approaches: advantages and artifacts in assessing bacterial diversity
Pontes, D. S., Lima-Bittencourt, C. I., Chartone‐Souza, E., & Nascimento, A. M. A. (2007) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-007-0219-3 · Cited by 111
Patterns and governing forces in aquatic microbial communities
Nold, S. C., & Zwart, G. (1998) · Aquatic Ecology · doi:10.1023/a:1009991918036 · Cited by 111
A mycoplasma high‐affinity transport system and the in vitro invasiveness of mouse sarcoma cells.
Dudler, R., Schmidhauser, C., Parish, R. W., Wettenhall, R. E. H., & Schmidt, T. (1988) · The EMBO Journal · doi:10.1002/j.1460-2075.1988.tb03283.x · Cited by 111
Bergerat, A., Gadelle, D., & Forterre, P. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)47037-8 · Cited by 111
Liu, S. L., Hessel, A., & Sanderson, K. E. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.13.4104-4120.1993 · Cited by 111
Singularities: Landmarks on the Pathways of Life
de Duve, C. (2005) · doi:10.1017/cbo9780511614736 · Cited by 141
The role of soil microorganisms in soil organic matter conservation in the tropics
Powlson, D. S., Hirsch, P. R., & Brookes, P. C. (2001) · Nutrient Cycling in Agroecosystems · doi:10.1023/a:1013338028454 · Cited by 110
“The ribosomal genes, in particular the 16s rRNA gene in prokaryotes, have been very useful for such studies: parts of the gene for this essential cellular component are highly conserved at the kingdom level, whereas others vary at the family, genus or species level (Woese, 1987).”
BackgroundCarro, L., Nouioui, I., Sangal, V., Meier‐Kolthoff, J. P., Trujillo, M. E., Montero‐Calasanz, M. D. C., Şahi̇n, N., Smith, D., Kim, K. E., Peluso, P. S., et al. (2018) · Scientific Reports · doi:10.1038/s41598-017-17392-0 · Cited by 110
Sundström, M., Lindqvist, Y., Schneider, G., Hellman, U., & Ronne, H. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(20)80532-8 · Cited by 110
Ventura, M., & Zink, R. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.12.6429-6434.2002 · Cited by 110
Naum, M., Brown, E. W., & Mason‐Gamer, R. J. (2008) · Journal of Molecular Evolution · doi:10.1007/s00239-008-9115-3 · Cited by 110
Lee, S., & Kemp, P. F. (1994) · Limnology and Oceanography · doi:10.4319/lo.1994.39.4.0869 · Cited by 110
Drancourt, M., & Raoult, D. (2005) · Journal of Clinical Microbiology · doi:10.1128/jcm.43.9.4311-4315.2005 · Cited by 110
In Situ Accessibility of Escherichia coli 23S rRNA to Fluorescently Labeled Oligonucleotide Probes
Fuchs, B. M., Syutsubo, K., Ludwig, W., & Amann, R. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.2.961-968.2001 · Cited by 110
Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA — a review
Pace, N. R., Smith, D. K., Olsen, G. J., & James, B. D. (1989) · Gene · doi:10.1016/0378-1119(89)90031-0 · Cited by 109
Evolution of heliobacteria: Implications for photosynthetic reaction center complexes
Vermaas, W. F. J. (1994) · Photosynthesis Research · doi:10.1007/bf02184169 · Cited by 109
Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum
RamÅ¡ak, A., Peterka, M., Tajima, K., Martin, J. C., Wood, J., Johnston, M. E. A., Aminov, R. I., Flint, H. J., & AvguÅ¡tin, G. (2000) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2000.tb00728.x · Cited by 109
Sugita, H., Nakamura, H., & Shimada, T. (2004) · Aquaculture · doi:10.1016/j.aquaculture.2004.09.028 · Cited by 109
Bacterial diversity in aortic aneurysms determined by 16S ribosomal RNA gene analysis
da Silva, R. M., Caugant, D. A., Eribe, E. R. K., Aas, J. A., Lingaas, P. S., Geiran, O. R., Tronstad, L., & Olsen, I. (2006) · Journal of Vascular Surgery · doi:10.1016/j.jvs.2006.07.021 · Cited by 111
Matthias, M. A., Díaz, M. M., Campos, K. J., Calderon, M. M., Willig, M. R., Pacheco, V., Gotuzzo, E., Gilman, R. H., & Vinetz, J. M. (2005) · American Journal of Tropical Medicine and Hygiene · doi:10.4269/ajtmh.2005.73.964 · Cited by 109
Gherna, R. L., & Woese, C. R. (1992) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(11)80110-4 · Cited by 109
Self-citationSpirochete chemotaxis, motility, and the structure of the spirochetal periplasmic flagella
Charon, N. W., Greenberg, E. P., Koopman, M. B. H., & Limberger, R. J. (1992) · Research in Microbiology · doi:10.1016/0923-2508(92)90117-7 · Cited by 109
Grtler, V., & Barrie, H. D. (1995) · Microbiology · doi:10.1099/13500872-141-5-1255 · Cited by 109
Rappé, M. S., Suzuki, M. T., Vergin, K. L., & Giovannoni, S. J. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.1.294-303.1998 · Cited by 111
Role of integration host factor in stimulating transcription from the σ54-dependent nifH promoter
Santero, E., Hoover, T. R., North, A. K., Berger, D. K., Porter, S. C., & Kustu, S. G. (1992) · Journal of Molecular Biology · doi:10.1016/0022-2836(92)90211-2 · Cited by 109
Koonin, E. V., Krupovìč, M., & Yutin, N. (2015) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.12728 · Cited by 108
A Biochemical Mechanism for Nonrandom Mutations and Evolution
Wright, B. E. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.11.2993-3001.2000 · Cited by 107
Rumen Bacterial Diversity of 80 to 110-Day-Old Goats Using 16S rRNA Sequencing
Han, X., Yang, Y., Yan, H., Wang, X., Qu, L., & Chen, Y. (2015) · PLoS ONE · doi:10.1371/journal.pone.0117811 · Cited by 108
Jenkins, C., Ling, C. L., Ciesielczuk, H., Lockwood, J., Hopkins, S., McHugh, T. D., Gillespie, S. H., & Kibbler, C. C. (2011) · Journal of Medical Microbiology · doi:10.1099/jmm.0.030387-0 · Cited by 111
“Use of broad-range 16S rRNA gene PCR as a tool for identification of bacteria is possible because the 16S rRNA gene is present in all bacteria (Woese, 1987).”
MethodSystems chemistry of peptide-assemblies for biochemical transformations
Chatterjee, A., Reja, A., Pal, S., & Das, D. (2022) · Chemical Society Reviews · doi:10.1039/d1cs01178b · Cited by 108
Advances in nucleic acid-based diagnostics of bacterial infections
Barken, K. B., Haagensen, J. A. J., & Tolker‐Nielsen, T. (2007) · Clinica Chimica Acta · doi:10.1016/j.cca.2007.07.004 · Cited by 111
The prokaryotic tree of life: past, present…and future?
McInerney, J. O., Cotton, J. A., & Pisani, D. (2008) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2008.01.008 · Cited by 109
An accuracy center in the ribosome conserved over 2 billion years.
Alksne, L. E., Anthony, R. A., Liebman, S. W., & Warner, J. R. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.20.9538 · Cited by 108
Evolution according to large ribosomal subunit RNA
Rijk, P. D., de Peer, Y. V., den Broeck, I. V., & Wächter, R. D. (1995) · Journal of Molecular Evolution · doi:10.1007/bf01215184 · Cited by 108
Brahamsha, B., & Haselkorn, R. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.8.2442-2450.1991 · Cited by 108
A fresh look at the evolution and diversification of photochemical reaction centers
Cardona, T. (2014) · Photosynthesis Research · doi:10.1007/s11120-014-0065-x · Cited by 108
Connolly, D. M., & Winkler, M. E. (1989) · Journal of Bacteriology · doi:10.1128/jb.171.6.3233-3246.1989 · Cited by 95
On the nature of global classification
Wheelis, M. L., Kandler, O., & Woese, C. R. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.7.2930 · Cited by 108
Self-citationGogarten-Boekels, M., Hilario, E., & Gogarten, J. P. (1995) · Origins of Life and Evolution of Biospheres · doi:10.1007/bf01581588 · Cited by 107
Archaean metabolic evolution of microbial mats
Nisbet, E. G., & Fowler, C. M. R. (1999) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.1999.0934 · Cited by 108
Stępkowski, T., Czaplińska, M., Miedzinska, K., & Moulin, L. (2003) · Systematic and Applied Microbiology · doi:10.1078/072320203770865765 · Cited by 107
VanOrsdel, C. E., Bhatt, S., Allen, R. J., Brenner, E. P., Hobson, J. J., Jamil, A., Haynes, B. M., Genson, A. M., & Hemm, M. R. (2013) · Journal of Bacteriology · doi:10.1128/jb.00324-13 · Cited by 106
Molecular signatures of ribosomal evolution
Roberts, E., Sethi, A., Montoya, J. A., Woese, C. R., & Luthey-Schulten, Z. A. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0804861105 · Cited by 107
Self-citationEnterococci as Members of the Intestinal Microflora of Humans
Tannock, G. W., & Cook, G. (2014) · ASM Press eBooks · doi:10.1128/9781555817923.ch3 · Cited by 107
Sădziene, A., Thomas, D. D., Bundoc, V., Holt, S. C., & Barbour, A. G. (1991) · Journal of Clinical Investigation · doi:10.1172/jci115308 · Cited by 107
The violent environment of the origin of life: Progress and uncertainties
Chyba, C. F. (1993) · Geochimica et Cosmochimica Acta · doi:10.1016/0016-7037(93)90543-6 · Cited by 107
The nature of the last universal ancestor and the root of the tree of life, still open questions
Forterre, P., Benachenhou, N., Confalonieri, F., Duguet, M., Elie, C., & Labedan, B. (1992) · Biosystems · doi:10.1016/0303-2647(92)90004-i · Cited by 107
Archaebacteria: The Comparative Enzymology of Their Central Metabolic Pathways
Danson, M. J. (1988) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/s0065-2911(08)60348-3 · Cited by 107
How stands the Tree of Life a century and a half after The Origin?
O'Malley, M. A., & Koonin, E. V. (2011) · Biology Direct · doi:10.1186/1745-6150-6-32 · Cited by 106
Contributions of plant molecular systematics to studies of molecular evolution
Soltis, E. D., & Soltis, P. S. (2000) · Plant Molecular Biology · doi:10.1023/a:1006371803911 · Cited by 106
Balcázar, J. L., Giral, I. D. B., Ruiz‐Zarzuela, I., Vendrell, D., Gironés, O., & Múzquiz, J. L. (2007) · Comparative Immunology Microbiology and Infectious Diseases · doi:10.1016/j.cimid.2006.12.001 · Cited by 106
Phylogenetic mapping of bacterial morphology
Siefert, J. L., & Fox, G. E. (1998) · Microbiology · doi:10.1099/00221287-144-10-2803 · Cited by 106
Sulfur Compounds as Photosynthetic Electron Donors
Brune, D. C. (2006) · Kluwer Academic Publishers eBooks · doi:10.1007/0-306-47954-0_39 · Cited by 107
Rosenthal, B. M., Mai, Z., Caplivski, D., Ghosh, S. K., de la Vega, H., Graf, T., & Samuelson, J. C. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.11.3736-3745.1997 · Cited by 106
Metadata
- Authors
- Woese, C. R.
- Corresponding author
- Woese, C R
- Venue
- Microbiological Reviews
- Publisher
- American Society for Microbiology
- Published
- 1987-06
- Volume
- 51
- Issue
- 2
- Pages
- 221-271
- ISSN
- 0146-0749 (ISSN-L)
- PMC
- PMC373105
- OpenAlex
- W4211022623
- Cited by
- 5,042
- References
- 2
- Citations by year
- 2026: 31 · 2025: 74 · 2024: 61 · 2023: 71 · 2022: 79 · 2021: 101 · 2020: 77 · 2019: 100 · 2018: 111 · 2017: 92 · 2016: 93 · 2015: 111 · 2014: 165 · 2013: 114 · 2012: 113
- FWCI
- 99.34
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Microbiological Reviews (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- bacterial evolution, bacterial phylogeny, bacterial diversity
- MeSH terms
- Bacteria, Base Sequence, Biological Evolution, Phylogeny, RNA, Bacterial, RNA, Ribosomal
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