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A molecular phylogeny of enteric bacteria and implications for a bacterial species concept
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“Molecular approaches have revealed three (Archaea, Bacteria and Eukarya), rather than five (Animalia, Plantae, Fungi, Protista and Monera), primary divisions of life and forced an acknowledgement of the extraordinary levels of microbial diversity (Fox et al., 1980; Pace et al., 1985; Woese, 1987; Woese et al., 1990).”
BackgroundPolyphasic approach of bacterial classification — An overview of recent advances
Prakash, O., Verma, M., Sharma, P., Kumar, M., Kumari, K., Singh, A. K., Kumari, H., Jit, S., Gupta, S. K., Khanna, M., et al. (2007) · Indian Journal of Microbiology · doi:10.1007/s12088-007-0022-x · Cited by 126
Cavalier‐Smith, T., & Chao, E. E. (1996) · Journal of Molecular Evolution · doi:10.1007/bf02202103 · Cited by 127
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Self-citationMetagenomics: Advances in ecology and biotechnology
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“The field of microbial ecology was revolutionised by the introduction of phylogenetics, the study of diversity based on the 16S rRNA/DNA [5].”
BackgroundArıkan, M., & Muth, T. (2023) · Molecular Omics · doi:10.1039/d3mo00089c · Cited by 133
Reactions and Enzymes Involved in Methanogenesis from CO2 and H2
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Efficient algorithms for lateral gene transfer problems
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Legionella-Like Amebal Pathogens––Phylogenetic Status and Possible Role in Respiratory Disease
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16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community
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Rapid molecular theranostics in infectious diseases.
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Phylogeny of nitrogenase sequences inFrankia and other nitrogen-fixing microorganisms
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Riemann, L., Steward, G. F., Fandino, L. B., Campbell, L., Landry, M. R., & Azam, F. (1999) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/s0967-0645(99)00044-2 · Cited by 124
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Bacterial classifications derived from recA protein sequence comparisons
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Fecal Microbiota Analysis: An Overview of Sample Collection Methods and Sequencing Strategies
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The enemy within: phloem‐limited pathogens
Bendix, C., & Lewis, J. D. (2016) · Molecular Plant Pathology · doi:10.1111/mpp.12526 · Cited by 130
Genera Leuconostoc, Oenococcus and Weissella
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Characterization of microbial communities in anaerobic bioreactors using molecular probes
Raskin, L. M., Zheng, D., Griffin, M. E., Stroot, P. G., & Misra, P. (1995) · Antonie van Leeuwenhoek · doi:10.1007/bf00874140 · Cited by 123
Molecular ecology of hydrothermal vent microbial communities
Jeanthon, C. (2000) · Antonie van Leeuwenhoek · doi:10.1023/a:1002463825025 · Cited by 123
“These were perceived to have a number of characteristics that made them eminently suitable for phylogenetic and determinative studies (Woese 1987).”
BackgroundThe emerging view on the origin and early evolution of eukaryotic cells
Vosseberg, J., van Hooff, J. J. E., Köstlbacher, S., Panagiotou, K., Tamarit, D., & Ettema, T. J. G. (2024) · Nature · doi:10.1038/s41586-024-07677-6 · Cited by 143
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“In general, the Planctomycetes constitute an independent phylum within the domain Bacteria (Woese, 1987), consisting of only one single family (Planctomycetaceae) with six accepted (Rhodopirellula, Blastopirellula, Pirellula, Planctomyces, Isosphaera, Gemmata) (Schlesner et al., 2004) and four candidate genera (Kuenen…”
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“If we accept the Universal Tree as determined by SSU rRNA gene sequences (Woese 1987; Pace 1997), it further appears that anaerobic chemosynthetic micro- organisms preceded photosynthetic groups.”
MethodAdvantages and limitations of genomics in prokaryotic taxonomy
Sentausa, E., & Fournier, P. (2013) · Clinical Microbiology and Infection · doi:10.1111/1469-0691.12181 · Cited by 121
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Phylogenetic Analysis of Molluscan Mitochondrial LSU rDNA Sequences and Secondary Structures
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“Genes encoding rRNAs (or rDNA genes) are considered reliable evolutionary markers for studying bacterial phylogeny due to their universal distribution, high conservation, and apparent absence of interspeci® c transfer (Woese 1987; Amann, Ludwig, and Schleifer 1995).”
BackgroundBringing gene order into bacterial shape
Tamames, J., Gonzalez-Moreno, M., Mingorance, J., Valencia, A., & Vicente, M. (2001) · Trends in Genetics · doi:10.1016/s0168-9525(00)02212-5 · Cited by 121
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Self-citationMolecular taxonomy and phylogenetic position of lactic acid bacteria
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Sandler, S. (1996) · Nucleic Acids Research · doi:10.1093/nar/24.11.2125 · Cited by 121
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Occurrence of fragmented 16S rRNA in an obligate bacterial endosymbiont of Paramecium caudatum.
Springer, N., Ludwig, W., Amann, R., SCHMIDT, H. J., Görtz, H., & SCHLEIFER, K. H. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.21.9892 · Cited by 119
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Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria
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“Different species have been placed in this group based on 16S rRNA oligonucleotide catalogues and phylogenetic analysis based on full and partial 16S rRNA gene sequences, although some species do not possess a high G+C content (Woese, 1987; Stackebrandt et al., 1997; Labeda & Kroppenstedt, 2000; Ludwig & Klenk, 2001).”
MethodPortable System for Microbial Sample Preparation and Oligonucleotide Microarray Analysis
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DNA polymorphism in strains of the genus Brucella
Allardet-Servent, A., Bourg, G., Ramuz, M., Pagès, M., Bellis, M., & Roizès, G. (1988) · Journal of Bacteriology · doi:10.1128/jb.170.10.4603-4607.1988 · Cited by 120
“Missing” protists: a molecular prospective
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Unusual Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase of Anoxic Archaea
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Is the periplasm continuous in filamentous multicellular cyanobacteria?
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Weller, R., Glöckner, F. O., & Amann, R. (2000) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(00)80051-x · Cited by 119
Origins of hydrogenosomes and mitochondria: evolution and organelle biogenesis
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Zehr, J. P., & Capone, D. G. (1996) · Microbial Ecology · doi:10.1007/bf00183062 · Cited by 119
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“The current taxonomy includes the Planctomycetes within the PVC superphylum, which encompass Planctomycetes, Verrucomicrobiae, Chlamydiae, Lentisphaerae, Poribacteria, OP3, WWE2 (Cho et al., 2004; Wagner and Horn, 2006; Siegl et al., 2010; Gupta et al., 2012; Pinos et al., 2016), and a novel phylum Saltatorellota, rec…”
BackgroundA possible chlorophycean affinity of some Neoproterozoic acritarchs
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“During the last two decades, 16S rRNA gene sequence analysis has provided new and valuable insights into the phylogenetic interrelationships between microorganisms (Woese, 1987) and is now considered essential for bacterial taxonomy.”
Complete 23S Ribosomal RNA Sequences of Gram-positive Bacteria with a Low DNA G+C Content
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The anammox case – A new experimental manifesto for microbiological eco-physiology
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Molecular Phylogenetic Analysis of a Bacterial Community in an Oligotrophic Cave Environment
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Metadata
- Authors
- Woese, C. R.
- Corresponding author
- Woese, C R
- Venue
- Microbiological Reviews
- Publisher
- American Society for Microbiology
- Published
- 1987-06
- Volume
- 51
- Issue
- 2
- Pages
- 221-271
- ISSN
- 0146-0749 (ISSN-L)
- PMC
- PMC373105
- OpenAlex
- W4211022623
- Cited by
- 5,042
- References
- 2
- Citations by year
- 2026: 31 · 2025: 74 · 2024: 61 · 2023: 71 · 2022: 79 · 2021: 101 · 2020: 77 · 2019: 100 · 2018: 111 · 2017: 92 · 2016: 93 · 2015: 111 · 2014: 165 · 2013: 114 · 2012: 113
- FWCI
- 99.34
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Microbiological Reviews (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- bacterial evolution, bacterial phylogeny, bacterial diversity
- MeSH terms
- Bacteria, Base Sequence, Biological Evolution, Phylogeny, RNA, Bacterial, RNA, Ribosomal
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