The DOI matches its Crossref record; 142 of the 142 references it cites were found in a registry or an index.
Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
Open accessAbstract
This work is part of a 10-year project to examine thawing permafrost peatlands and is the first virome-particle-based approach to characterize viruses in these systems. This method yielded >2-fold-more viral populations (vOTUs) per gigabase of metagenome than vOTUs derived from bulk-soil metagenomes from the same site (J. B. Emerson, S. Roux, J. R. Brum, B. Bolduc, et al., Nat Microbiol 3:870–880, 2018, https://doi.org/10.1038/s41564-018-0190-y ). We compared the ecology of the recovered vOTUs along a permafrost thaw gradient and found (i) habitat specificity, (ii) a shift in viral community identity from soil-like to aquatic-like viruses, (iii) infection of dominant microbial hosts, and (iv) carriage of host metabolic genes. These vOTUs can impact ecosystem carbon processing via top-down (inferred from lysing dominant microbial hosts) and bottom-up (inferred from carriage of auxiliary metabolic genes) controls. This work serves as a foundation which future studies can build upon to increase our understanding of the soil virosphere and how viruses affect soil ecosystem services.
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Cited by
Kieft, K., Zhou, Z., & Anantharaman, K. (2020) · Microbiome · doi:10.1186/s40168-020-00867-0 · Cited by 1,123
The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
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Self-citationWilpiszeski, R. L., Aufrecht, J. A., Retterer, S. T., Sullivan, M. B., Graham, D. E., Pierce, E. M., Zablocki, O. D., Palumbo, A. V., & Elias, D. A. (2019) · Applied and Environmental Microbiology · doi:10.1128/aem.00324-19 · Cited by 441
Self-citationWildfire-dependent changes in soil microbiome diversity and function
Nelson, A. R., Narrowe, A. B., Rhoades, C. C., Fegel, T. S., Daly, R. A., Roth, H. K., Chu, R. K., Amundson, K. K., Young, R. B., Steindorff, A. S., et al. (2022) · Nature Microbiology · doi:10.1038/s41564-022-01203-y · Cited by 259
Bacteriophages in Natural and Artificial Environments
Batinovic, S., Wassef, F., Knowler, S. A., Rice, D. T. F., Stanton, C. R., Rose, J., Tucci, J., Nittami, T., Vinh, A., Drummond, G. R., et al. (2019) · Pathogens · doi:10.3390/pathogens8030100 · Cited by 253
Metadata
- Authors
- Trubl, G., Jang, H. B., Roux, S., Emerson, J. B., Solonenko, N., Vik, D. R., Solden, L., Ellenbogen, J., Runyon, A. T., Bolduc, B., Woodcroft, B. J., Saleska, S. R., Tyson, G. W., Wrighton, K. C., Sullivan, M. B., & Rich, V. I.
- Venue
- mSystems
- Publisher
- American Society for Microbiology
- Published
- 2018-10-30
- Volume
- 3
- Issue
- 5
- ISSN
- 2379-5077 (ISSN-L)
- OpenAlex
- W2808646128
- Cited by
- 355
- References
- 142
- FWCI
- 27.16
- Type
- journal article
- Language
- en
- Open access
- gold
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- Trubl, G., Jang, H. B., Roux, S., Emerson, J. B., Solonenko, N., Vik, D. R., Solden, L., Ellenbogen, J., Runyon, A. T., Bolduc, B., Woodcroft, B. J., Saleska, S. R., Tyson, G. W., Wrighton, K. C., Sullivan, M. B., & Rich, V. I. (2018). Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing. mSystems. https://doi.org/10.1128/msystems.00076-18
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