The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Do mitochondria have an immune system?
Abstract
The question if mitochondria have some kind of immune system is not trivial. The basis for raising this question is the fact that bacteria, which are progenitors of mitochondria, do have an immune system. The CRISPR system in bacteria based on the principle of RNA interference serves as an organized mechanism for destroying alien nucleic acids, primarily those of viral origin. We have shown that mitochondria are also a target for viral attacks, probably due to a related organization of genomes in these organelles and bacteria. Bioinformatic analysis performed in this study has not given a clear answer if there is a CRISPR-like immune system in mitochondria. However, this does not preclude the possibility of mitochondrial immunity that can be difficult to decipher or that is based on some principles other than those of CRISPR.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“In line with the theory of the prokaryotic immune system, viral DNA fragments (“spacers” 17-84 bases long), separated by short palindromic repeats (23-50 bases [8]) and grouped into clusters in intergenic regions, represent a library of potentially dangerous genetic information”
From CRISPR–Cas9: A History of Its Discovery and Ethical Considerations of Its Use in Genome Editing (2022) · cites this paper as [8]
In the citing paper
“but these observations were not confirmed in later studies [8].”
From CRISPR–Cas9: A History of Its Discovery and Ethical Considerations of Its Use in Genome Editing (2022) · cites this paper as [8]
Citations
Cites
Mitochondrial dynamics regulate the RIG-I-like receptor antiviral pathway
Castanier, C., Garcin, D., Vazquez, A., & Arnoult, D. (2010) · The EMBO Reports · doi:10.1038/embor.2009.258 · Cited by 316
Research works printed but not linked: 71
- Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D. A., and Horvath, P. (2007) CRISPR provides acquired resistance against viruses in prokaryotes, Science, 315, 1709–1712. · DOI · Paper page
- Price, W. H. (1952) Bacterial viruses, Annu. Rev. Microbiol., 6, 333–348. · DOI
- Anand, S. K., and Tikoo, S. K. (2013) Viruses as modulators of mitochondrial functions, Adv. Virol., 2013, 738–794. · DOI
- Zhdanov, V. M., Tikhonenko, T. I., Bocharov, A. F., and Naroditsky, B. A. (1971) Reproduction of tobacco mosaic virus in isolated rat liver mitochondria, DAN SSSR, 199, 944–947.
- Zhdanov, V. M. (1972) Functioning of viral genome in isolated mitochondria, Vest. Akad. Med. Nauk, 27, 86–91.
- Macho, A., Castedo, M., Marchetti, P., Aguilar, J. J., Decaudin, D., Zamzami, N., Girard, P. M., Uriel, J., and Kroemer, G. (1995) Mitochondrial dysfunctions in circulating T-lymphocytes from human immunodeficiency virus-1 carriers, Blood, 86, 2481–2487. · DOI
- Tollefson, A. E., Ryerse, J. S., Scaria, A., Hermiston, T. W., and Wold, W. S. (1996) The E3-11.6-kDa adenovirus death protein (ADP) is required for efficient cell death: characterization of cells infected with adp mutants, Virology, 220, 152–162. · DOI
- Alandijany, T., Kammouni, W., Roy Chowdhury, S. K., Fernyhough, P., and Jackson, A. C. (2013) Mitochondrial dysfunction in rabies virus infection of neurons, J. Neurovirol., 19, 537–549. · DOI
- Kruman, I. I., Nath, A., and Mattson, M. P. (1998) HIV-1 protein Tat induces apoptosis of hippocampal neurons by a mechanism involving caspase activation, calcium overload, and oxidative stress, Exp. Neurol., 154, 276–288. · DOI
- Lassoued, S., Ben Ameur, R., Ayadi, W., Gargouri, B., Ben Mansour, R., and Attia, H. (2008) Epstein–Barr virus induces an oxidative stress during the early stages of infection in B-lymphocytes, epithelial, and lymphoblastoid cell lines, Mol. Cell. Biochem., 313, 179–186. · DOI
- Monne, M., Robinson, A. J., Boes, C., Harbour, M. E., Fearnley, I. M., and Kunji, E. R. S. (2007) The mimivirus genome encodes a mitochondrial carrier that transports dATP and dTTP, J. Virol., 81, 3181–3186. · DOI
- Kim, Y.-J., Jung, J. K., Lee, S. Y., and Jang, K. L. (2010) Hepatitis B virus X protein overcomes stress-induced premature senescence by repressing p16(INK4a) expression via DNA methylation, Cancer Lett., 288, 226–235. · DOI
- Lund, K., and Ziola, B. (1985) Cell sonicates used in the analysis of how measles and herpes simplex type 1 virus infections influence Vero cell mitochondrial calcium uptake, Can. J. Biochem. Cell Biol., 63, 1194–1197. · DOI
- Foti, M., Cartier, L., Piguet, V., Lew, D. P., Carpentier, J. L., Trono, D., and Krause, K. H. (1999) The HIV Nef protein alters Ca2+ signaling in myelomonocytic cells through SH3-mediated protein–protein interactions, J. Biol. Chem., 274, 34765–34772. · DOI
- Campbell, R. V., Yang, Y., Wang, T., Rachamallu, A., Li, Y., Watowich, S. J., and Weinman, S. A. (2009) Chapter 20. Effects of hepatitis C core protein on mitochondrial electron transport and production of reactive oxygen species, Methods Enzymol., 456, 363–380. · DOI
- Diaz, Y., Chemello, M. E., Pena, F., Aristimuno, O. C., Zambrano, J. L., Rojas, H., Bartoli, F., Salazar, L., Chwetzoff, S., Sapin, C., Trugnan, G., Michelangeli, F., and Ruiz, M. C. (2008) Expression of nonstructural rotavirus protein NSP4 mimics Ca2+ homeostasis changes induced by rotavirus infection in cultured cells, J. Virol., 82, 11331–11343. · DOI
- Aldabe, R., Irurzun, A., and Carrasco, L. (1997) Poliovirus protein 2BC increases cytosolic free calcium concentrations, J. Virol., 71, 6214–6217. · DOI
- Moise, A. R., Grant, J. R., Vitalis, T. Z., and Jefferies, W. A. (2002) Adenovirus E3-6.7K maintains calcium homeostasis and prevents apoptosis and arachidonic acid release, J. Virol., 76, 1578–1587. · DOI
- Van Kuppeveld, F. J. M., De Jong, A. S., Melchers, W. J., and Willems, P. H. (2005) Enterovirus protein 2B po(u)res out the calcium: a viral strategy to survive? Trends Microbiol., 13, 41–44. · DOI
- Bozidis, P., Williamson, C. D., Wong, D. S., and ColbergPoley, A. M. (2010) Trafficking of UL37 proteins into mitochondrion-associated membranes during permissive human cytomegalovirus infection, J. Virol., 84, 7898–7903. · DOI
- McGuire, K. A., Barlan, A. U., Griffin, T. M., and Wiethoff, C. M. (2011) Adenovirus type 5 rupture of lysosomes leads to cathepsin B-dependent mitochondrial stress and production of reactive oxygen species, J. Virol., 85, 10806–10813. · DOI
- Nishina, S., Hino, K., Korenaga, M., Vecchi, C., Pietrangelo, A., Mizukami, Y., Furutani, T., Sakai, A., Okuda, M., Hidaka, I., Okita, K., and Sakaida, I. (2008) Hepatitis C virus-induced reactive oxygen species raise hepatic iron level in mice by reducing hepcidin transcription, Gastroenterology, 134, 226–238. · DOI · Paper page
- Gil, L., Tarinas, A., Hernandez, D., Riveron, B. V., Perez, D., Tapanes, R., Capo, V., and Perez, J. (2011) Altered oxidative stress indexes related to disease progression marker in human immunodeficiency virus infected patients with antiretroviral therapy, Biomed. Aging Pathol., 1, 8–15. · DOI
- Lassoued, S., Gargouri, B., El Feki Ael F., Attia, H., and Van Pelt, J. (2010) Transcription of the Epstein–Barr virus lytic cycle activator BZLF-1 during oxidative stress induction, Biol. Trace Elem. Res., 137, 13–22. · DOI
- Hu, L., Chen, L., Yang, G., Li, L., Sun, H., Chang, Y., Tu, Q., Wu, M., and Wang, H. (2011) HBx sensitizes cells to oxidative stress-induced apoptosis by accelerating the loss of Mcl-1 protein via caspase-3 cascade, Mol. Cancer, 10, 43. · DOI
- Srisuttee, R., Koh, S. S., Park, E. H., Cho, I.-R., Min, H. J., Jhun, B. H., Yu, D.-Y., Park, S., Park, D. Y., Lee, M. O., Castrillon, D. H., Johnston, R. N., and Chung, Y.-H. (2011) Up-regulation of Foxo4 mediated by hepatitis B virus X protein confers resistance to oxidative stressinduced cell death, Int. J. Mol. Med., 28, 255–260.
- Ano, Y., Sakudo, A., Kimata, T., Uraki, R., Sugiura, K., and Onodera, T. (2010) Oxidative damage to neurons caused by the induction of microglial NADPH oxidase in encephalomyocarditis virus infection, Neurosci. Lett., 469, 39–43. · DOI
- Gonzalez, M. E., and Carrasco, L. (2003) Viroporins, FEBS Lett., 552, 28–34. · DOI
- Deniaud, A., Brenner, C., and Kroemer, G. (2004) Mitochondrial membrane permeabilization by HIV-1 Vpr, Mitochondrion, 4, 223–233. · DOI
- Everett, H., Barry, M., Sun, X., Lee, S. F., Frantz, C., Berthiaume, L. G., McFadden, G., and Bleackley, R. C. (2002) The myxoma poxvirus protein, M11L, prevents apoptosis by direct interaction with the mitochondrial permeability transition pore, J. Exp. Med., 196, 1127–1139. · DOI
- Gibbs, J. S., Malide, D., Hornung, F., Bennink, J. R., and Yewdell, J. W. (2003) The influenza A virus PB1-F2 protein targets the inner mitochondrial membrane via a predicted basic amphipathic helix that disrupts mitochondrial function, J. Virol., 77, 7214–7224. · DOI
- Biasiotto, R., Aguiari, P., Rizzuto, R., Pinton, P., D’ Agostino, D. M., and Ciminale, V. (2010) The p13 protein of human T-cell leukemia virus type 1 (HTLV-1) modulates mitochondrial membrane potential and calcium uptake, Biochim. Biophys. Acta, 1797, 945–951. · DOI
- Nudson, W. A., Rovnak, J., Buechner, M., and Quackenbush, S. L. (2003) Walleye dermal sarcoma virus Orf C is targeted to the mitochondria, J. Gen. Virol., 84, 375–381. · DOI
- Nieva, J. L., Agirre, A., Nir, S., and Carrasco, L. (2003) Mechanisms of membrane permeabilization by picornavirus 2B viroporin, FEBS Lett., 552, 68–73. · DOI
- Matthews, D. A., and Russell, W. C. (1998) Adenovirus core protein V interacts with p32–a protein, which is associated with both the mitochondria and the nucleus, J. Gen. Virol., 79, 1677–1685. · DOI
- Kaminska, M., Shalak, V., Francin, M., and Mirande, M. (2007) Viral hijacking of mitochondrial lysyl-tRNA synthetase, J. Virol., 81, 68–73. · DOI
- Seo, J.-Y., Yaneva, R., Hinson, E. R., and Cresswell, P. (2011) Human cytomegalovirus directly induces the antiviral protein viperin to enhance infectivity, Science, 332, 1093–1097. · DOI
- Kim, S., Kim, H.-Y., Lee, S., Kim, S. W., Sohn, S., Kim, K., and Cho, H. (2007) Hepatitis B virus X protein induces perinuclear mitochondrial clustering in microtubuleand dynein-dependent manners, J. Virol., 81, 1714–1726. · DOI
- Nomura-Takigawa, Y., Nagano-Fujii, M., Deng, L., Kitazawa, S., Ishido, S., Sada, K., and Hotta, H. (2006) Non-structural protein 4A of hepatitis C virus accumulates on mitochondria and renders the cells prone to undergoing mitochondria-mediated apoptosis, J. Gen. Virol., 87, 1935–1945. · DOI
- Radovanovic, J., Todorovic, V., Boricic, I., JankovicHladni, M., and Korac, A. (1999) Comparative ultrastructural studies on mitochondrial pathology in the liver of AIDS patients: clusters of mitochondria, protuberances, minimitochondria, vacuoles, and virus-like particles, Ultrastruct. Pathol., 23, 19–24. · DOI
- Rojo, G., Chamorro, M., Salas, M. L., Vinuela, E., Cuezva, J. M., and Salas, J. (1998) Migration of mitochondria to viral assembly sites in African swine fever virusinfected cells, J. Virol., 72, 7583–7588. · DOI
- Kelly, D. C. (1975) Frog virus 3 replication: electron microscope observations on the sequence of infection in chick embryo fibroblasts, J. Gen. Virol., 26, 71–86. · DOI
- Kim, Y.-J., Jung, J. K., Lee, S. Y., and Jang, K. L. (2010) Hepatitis B virus X protein overcomes stress-induced premature senescence by repressing p16INK4a expression via DNA methylation, Cancer Lett., 288, 226–235. · DOI
- Wiedmer, A., Wang, P., Zhou, J., Rennekamp, A. J., Tiranti, V., Zeviani, M., and Lieberman, P. M. (2008) Epstein–Barr virus immediate-early protein Zta co-opts mitochondrial single-stranded DNA binding protein to promote viral and inhibit mitochondrial DNA replication, J. Virol., 82, 4647–4655. · DOI
- Machida, K., Cheng, K. T.-H., Lai, C.-K., Jeng, K.-S., Sung, V. M.-H., and Lai, M. M. (2006) Hepatitis C virus triggers mitochondrial permeability transition with production of reactive oxygen species, leading to DNA damage and STAT3 activation, J. Virol., 80, 7199–7207. · DOI
- De Mendoza, C., Martin-Carbonero, L., Barreiro, P., De Baar, M., Zahonero, N., Rodriguez-Novoa, S., Benito, J. M., Gonzalez-Lahoz, J., and Soriano, V. (2007) Mitochondrial DNA depletion in HIV-infected patients with chronic hepatitis C and effect of pegylated interferon plus ribavirin therapy, AIDS, 21, 583–588. · DOI
- Saffran, H. A., Pare, J. M., Corcoran, J. A., Weller, S. K., and Smiley, J. R. (2007) Herpes simplex virus eliminates host mitochondrial DNA, EMBO Rep., 8, 188–193. · DOI
- Koshiba, T. (2013) Mitochondrial-mediated antiviral immunity, Biochim. Biophys. Acta, 1833, 225–232. · DOI
- Seth, R. B., Sun, L., Ea, C.-K., and Chen, Z. J. (2005) Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3, Cell, 122, 669–682. · DOI · Paper page
- Sun, Q., Sun, L., Liu, H.-H., Chen, X., Seth, R. B., Forman, J., and Chen, Z. J. (2006) The specific and essential role of MAVS in antiviral innate immune responses, Immunity, 24, 633–642. · DOI
- Li, X.-D., Sun, L., Seth, R. B., Pineda, G., and Chen, Z. J. (2005) Hepatitis C virus protease NS3/4A cleaves mitochondrial antiviral signaling protein off the mitochondria to evade innate immunity, Proc. Natl. Acad. Sci. USA, 102, 17717–17722. · DOI
- Yang, Y., Liang, Y., Qu, L., Chen, Z., Yi, M., Li, K., and Lemon, S. M. (2007) Disruption of innate immunity due to mitochondrial targeting of a picornaviral protease precursor, Proc. Natl. Acad. Sci. USA, 104, 7253–7258. · DOI
- Wei, C., Ni, C., Song, T., Liu, Y., Yang, X., Zheng, Z., Jia, Y., Yuan, Y., Guan, K., Xu, Y., Cheng, X., Zhang, Y., Yang, X., Wang, Y., Wen, C., Wu, Q., Shi, W., and Zhong, H. (2010) The hepatitis B virus X protein disrupts innate immunity by downregulating mitochondrial antiviral signaling protein, J. Immunol., 185, 1158–1168. · DOI
- Koshiba, T., Yasukawa, K., Yanagi, Y., and Kawabata, S. (2011) Mitochondrial membrane potential is required for MAVS-mediated antiviral signaling, Sci. Signal., 4, ra7. · DOI
- Marraffini, L. A. (2015) CRISPR-Cas immunity in prokaryotes, Nature, 526, 55–61. · DOI
- Bagasra, O., and Prilliman, K. R. (2004) RNA interference: the molecular immune system, J. Mol. Histol., 35, 545–553. · DOI
- Westra, E. R., Buckling, A., and Fineran, P. C. (2014) CRISPR-Cas systems: beyond adaptive immunity, Nat. Rev. Microbiol., 12, 317–326. · DOI
- Jaag, H. M., Lu, Q., Schmitt, M. E., and Nagy, P. D. (2011) Role of RNase MRP in viral RNA degradation and RNA recombination, J. Virol., 85, 243–253. · DOI
- Xia, C., Chen, Y.-C., Gong, H., Zeng, W., Vu, G.-P., Trang, P., Lu, S., Wu, J., and Liu, F. (2013) Inhibition of hepatitis B virus gene expression and replication by ribonuclease P, Mol. Ther., 21, 995–1003. · DOI
- Borralho, P. M., Rodrigues, C. M., and Steer, C. J. (2015) microRNAs in mitochondria: an unexplored niche, Adv. Exp. Med. Biol., 887, 31–51. · DOI
- Mojica, F. J., Diez-Villasenor, C., Soria, E., and Juez, G. (2000) Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria, Mol. Microbiol., 36, 244–246. · DOI
- Voinnet, O. (2001) RNA silencing as a plant immune system against viruses, Trends Genet., 17, 449–459. · DOI
- Kuzminova, A. E., Zhuravlyova, A. V., Vyssokikh, M. Yu., V., Zorova, L. D., Krasnikov, B. F., and Zorov, D. B. (1998) The permeability transition pore induced under anaerobic conditions in mitochondria energized with ATP, FEBS Lett., 434, 313–316. · DOI
- Zorova, L. D., Krasnikov, B. F., Kuzminova, A. E., Polyakova, I. A., Dobrov, E. N., and Zorov, D. B. (2000) Virus-induced permeability transition in mitochondria, FEBS Lett., 466, 305–309. · DOI
- Edgar, R. C. (2007) PILER-CR: fast and accurate identification of CRISPR repeats, BMC Bioinformatics, 8, 18. · DOI
- Rice, P., Longden, I., and Bleasby, A. (2000) EMBOSS: the European Molecular Biology Open Software Suite, Trends Genet., 16, 276–277. · DOI · Paper page
- Rahmani, Z., Huh, K. W., Lasher, R., and Siddiqui, A. (2000) Hepatitis B virus X protein colocalizes to mitochondria with a human voltage-dependent anion channel, HVDAC3, and alters its transmembrane potential, J. Virol., 74, 2840–2846. · DOI
- Zorov, D. B. (1996) Mitochondrial transport of nucleic acids. Involvement of the benzodiazepine receptor, Biochemistry (Moscow), 61, 939–946.
- Zorov, D. B. (1996) Mitochondrial damage as a source of diseases and aging: a strategy of how to fight these, Biochim. Biophys. Acta, 1275, 10–15. · DOI
- Simon, L. D., and Anderson, T. F. (1967) The infection of Escherichia coli by T2 and T4 bacteriophages as seen in the electron microscope. I. Attachment and penetration, Virology, 32, 279–297. · DOI
- Harrison, B. D., and Roberts, I. M. (1968) Association of tobacco rattle virus with mitochondria, J. Gen. Virol., 3, 121–124. · DOI
Cited by
Sorted by citations
CRISPR–Cas9: A History of Its Discovery and Ethical Considerations of Its Use in Genome Editing
Gostimskaya, I. (2022) · Biochemistry (Moscow) · doi:10.1134/s0006297922080090 · Cited by 224
Metadata
- Authors
- Popkov, V. A., Zorova, L. D., Korvigo, I. O., Silachev, D. N., Jankauskas, S. S., Babenko, V. A., Pevzner, I. B., Danilina, T. I., Zorov, S. D., Plotnikov, E. Y., & Zorov, D. B.
- Venue
- Biochemistry (Moscow)
- Publisher
- Pleiades Publishing Ltd
- Published
- 2016-10
- Volume
- 81
- Issue
- 10
- Pages
- 1229-1236
- ISSN
- 0006-2979
- 1608-3040
- Cited by
- 5
- References
- 1
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review