A Field Guide to Eukaryotic Transposable Elements

The zebrafish reference genome sequence and its relationship to the human genome.

Howe, K., Clark, M. D., Torroja, C. F., Torrance, J., Berthelot, C., Muffato, M., Collins, J. E., Humphray, S., McLaren, K., Matthews, L., et al. (2013) · Nature · doi:10.1038/nature12111 · Cited by 5,100

RepeatModeler2 for automated genomic discovery of transposable element families

Flynn, J. M., Hubley, R., Goubert, C., Rosen, J., Clark, A. G., Feschotte, C., & Smit, A. F. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1921046117 · Cited by 3,848

A unified classification system for eukaryotic transposable elements

Wicker, T., Sabot, F., Hua‐Van, A., Bennetzen, J. L., Capy, P., Chalhoub, B., Flavell, A. J., Leroy, P., Morgante, M., Panaud, O., et al. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2165 · Cited by 3,159

Repeated Sequences in DNA

Britten, R. J., & Kohne, D. E. (1968) · Science · doi:10.1126/science.161.3841.529 · Cited by 2,789

Gene Regulation for Higher Cells: A Theory

Britten, R. J., & Davidson, E. H. (1969) · Science · doi:10.1126/science.165.3891.349 · Cited by 2,078

The origins of genome complexity

Lynch, M., & Conery, J. S. (2003) · Science · doi:10.1126/science.1089370 · Cited by 1,698

Alu repeats and human genomic diversity

Batzer, M., & Deininger, P. (2002) · Nature reviews genetics · doi:10.1038/nrg798 · Cited by 1,522

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Ou, S., Su, W., Liao, Y., Chougule, K. M., Agda, J. R. A., Hellinga, A. J., Lugo, C. S. B., Elliott, T. A., Ware, D., Peterson, T., et al. (2019) · Genome biology · doi:10.1186/s13059-019-1905-y · Cited by 1,522

Regulatory activities of transposable elements: from conflicts to benefits

Chuong, E. B., Elde, N. C., & Feschotte, C. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2016.139 · Cited by 1,489

The Norway spruce genome sequence and conifer genome evolution

Nystedt, B., Street, N. R., Wetterbom, A., Zuccolo, A., Lin, Y., Scofield, D. G., Vezzi, F., Delhomme, N., Giacomello, S., Alexeyenko, A., et al. (2013) · Nature · doi:10.1038/nature12211 · Cited by 1,463

From survival of irradiated mice to modern molecular insights: a seventy-year journey in radiobiology at the institute of biophysics, Czech academy of sciences

Toufar, J., Toufarová, L., Falková, I., Bačı́ková, A., & Falk, M. (2025) · European Biophysics Journal · doi:10.1007/s00249-025-01765-9 · Cited by 2

Transposable Elements in the Genome of Human Parasite Schistosoma mansoni: A Review

Philippsen, G. S. (2021) · Tropical Medicine and Infectious Disease · doi:10.3390/tropicalmed6030126 · Cited by 2

Patterns of genome size evolution versus fraction of repetitive elements in statu nascendi species: the case of the willistoni subgroup of Drosophila (Diptera, Drosophilidae)

Antoniolli, H., Deprá, M., & Valente, V. L. D. S. (2023) · Genome · doi:10.1139/gen-2022-0073 · Cited by 2

Jack of all trades versus master of one: how generalist versus specialist strategies of transposable elements relate to their horizontal transfer between lineages

Kelleher, E. S. (2023) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2023.102080 · Cited by 3

Copy number variations: The potential association genetic cause in severe cardiovascular diseases with unknown aetiology

Naderi, N., MozafaryBazargany, M., Maleki, M., & Kalayinia, S. (2024) · Journal of Cellular and Molecular Medicine · doi:10.1111/jcmm.18461 · Cited by 2

Transposable Element Landscape in the Monotypic Species Barthea barthei (Hance) Krass (Melastomataceae) and Its Role in Ecological Adaptation

Wu, W., Zeng, Y., Huang, Z., Peng, H., Sun, Z., & Xu, B. (2025) · Biomolecules · doi:10.3390/biom15030346 · Cited by 2

Spatial Transcriptomics Unveils the Blueprint of Mammalian Lung Development

陈明月, M. C., 吕俊杰, J. L., 张乔, Q. Z., 龚倩, Q. G., 赵婷, T. Z., 陈振平, Z. C., 徐海深, H. X., 周南, N. Z., 姜姗, S. J., 都建, J. D., et al. (2025) · Genomics Proteomics & Bioinformatics · doi:10.1093/gpbjnl/qzaf053 · Cited by 2

Dynamics and evolution of transposable elements in mosquito genomes

Daron, J., Bergman, A., & Lambrechts, L. (2025) · Current Opinion in Insect Science · doi:10.1016/j.cois.2025.101406 · Cited by 3

Helitrons are enriched in lichenized fungi with long generation lengths and small distribution sizes

Paulsen, J., Sharrett, S. T., Mumey, D., Larsen, E. M., Nguyen, N. K., Lendemer, J. C., Calabria, L. M., Hoffman, J. R., Mágori, K., & Allen, J. L. (2026) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkag153 · Cited by 3

Nuclear genome profiling of two species of Epidendrum (Orchidaceae): genome size, repeatome, and ploidy

Alcalá-Gaxiola, M. A., Salazar, G. A., Hágsater, E., Flores-Iniestres, M. A., Cabrera, L. G., Aviña-Rivera, A. I., Mercado‐Ruaro, P., Magallón, S., Mendoza, C. G., Núñez-Ruiz, A., et al. (2026) · NAR Genomics and Bioinformatics · doi:10.1093/nargab/lqag045 · Cited by 2

Functional Characterization of the N-Terminal Disordered Region of the piggyBac Transposase

Wachtl, G., Schád, É., Huszár, K., Palazzo, A., Ivics, Z., Tantos, Á., & Orbán, T. I. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms231810317 · Cited by 3

The Chlamydomonas nuclear genome

Craig, R. J., & Vallon, O. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-822457-1.00017-0 · Cited by 2

A Molecular Analysis of the Aminopeptidase P-Related Domain of PID-5 from Caenorhabditis elegans

Lloyd, A. C., Gregory, K. S., Isaac, R. E., & Acharya, K. R. (2023) · Biomolecules · doi:10.3390/biom13071132 · Cited by 2

A genomic portrait of zebrafish transposable elements and their spatiotemporal embryonic expressionPreprint

Chang, N., Rovira, Q., Wells, J. N., Feschotte, C., & Vaquerizas, J. M. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.04.08.439009 · Cited by 2

Recombination

Korol, A., & Rybnikov, S. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-822562-2.00078-5 · Cited by 2

Transposon accumulation at xenobiotic gene family loci: a comparative genomic analysis in aphidsPreprint

Baril, T., Pym, A., Bass, C., & Hayward, A. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.02.20.529256 · Cited by 2

RNA Regulatory Networks 2.0

Enguita, F. J., Leitão, A. L., & Mattick, J. S. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24109001 · Cited by 2

Navigating the Maze of Maize Genomics: The Impact of Transposable Elements and Tandem RepeatsPreprint

Heringer, P., Benson, C. W., & Ou, S. (2024) · Cold Spring Harbor Protocols · doi:10.1101/pdb.top108441 · Cited by 2

PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based PangenomesPreprint

Wang, Y., Cao, S., Liu, Z., Liu, Y., Liu, Z., Ma, W., Lü, J., Xiao, H., Chen, J., Ou, S., et al. (2025) · Research Square · doi:10.21203/rs.3.rs-5867196/v1 · Cited by 2

TypeSINE: Genome-Wide Detection of SINE Retrotransposon Polymorphisms Reveals Functional Variants Linked to Body Size Variation in PigsPreprint

Zheng, Y., Yang, N., Chen, C., Zong, W., Chen, H., Shi, S., Wang, X., Muráni, E., Reyer, H., Gao, B., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.05.21.653756 · Cited by 2

Evolutionary remodeling of non-canonical ORF translation in mammalsPreprint

Chang, Y., Lei, T., Zhou, F., Jiang, J., Huang, Y., Zhu, Z., & Zhang, H. (2025) · eLife · doi:10.7554/elife.109128 · Cited by 2

LEMONmethyl-seq: Targeted long-read DNA methylation profiling reveals dynamics of CRISPR epigenome editing and endogenous DNA methylation patternsPreprint

Christenson, A. E., Divekar, N. S., Lubin, J. P., Palma, L. G., Colias, P. J., Pattali, R. K., Xu, D. Z., Hubbard, A., Lin, K., Phan, N., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.24.707761 · Cited by 2

Transposon targeting non-coding RNA transcription targets G/C-rich tracts and is facilitated by an intrinsically disordered protein in Tetrahymena

Cai, X., Liu, Y., Li, J., Zhao, Z., Yao, X., Zhai, Z., Liucong, M., Liu, Y., Wang, X., Mochizuki, K., et al. (2026) · Science China Life Sciences · doi:10.1007/s11427-025-3103-x · Cited by 1

Comparative genomic and transcriptome analyses of transposable elements in buffalo identify key short interspersed element–derived genes for testicular and muscle development

Liu, Q., Ni, Z., Yu, B., Abdel-Shafy, H., Cheng, L., & Chen, H. (2025) · Journal of Dairy Science · doi:10.3168/jds.2025-26854 · Cited by 1

Analysis of human endogenous retrovirus in hepatocellular carcinomas using HERV-Fcount

Chang, Y., Hsu, M.-H., Chung, C., Lai, I., Lee, Y.-T., Yen, J.-C., Chang, C., Liu, T., & Chang, J. (2025) · BMC Microbiology · doi:10.1186/s12866-025-04358-w · Cited by 1

Deconstructing gene therapy in hemophilia for the clinician

Young, G. A. (2025) · Hematology · doi:10.1182/hematology.2025000763 · Cited by 1

Oncogenic role of ERV with therapeutic potential

Xia, P.-H., Zhao, W., & Xiong, J. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1807944 · Cited by 1

Plant eccDNA as drivers of genome plasticity and stress adaptation

Ni, H., López-Arredondo, D. L., Gu, M., Yong‐Villalobos, L., Xu, G., & Herrera‐Estrella, L. (2026) · Trends in Plant Science · doi:10.1016/j.tplants.2026.04.014 · Cited by 1

MORC3 represses a tandem repeat enhancer to regulate interferon

Krumwiede, L., Hollaus, D., Valeri, E., Schindler, K., Bazyl, M. A., Schiedlbauer, J., Becht, N. N., Jaritz, M., de Almeida, B. P., Schloissnig, S., et al. (2026) · The EMBO Journal · doi:10.1038/s44318-026-00799-9 · Cited by 1

Integrative transcriptomic analysis uncovers the microRNA-centric regulation of Japanese encephalitis virus infection in porcine trophoblast cells

Yang, J., Jiang, J., Gong, J., Zhang, L., Li, C., Bao, X., Fan, H., Dai, C., Li, Y., Chen, S., et al. (2026) · Virulence · doi:10.1080/21505594.2026.2690825 · Cited by 1

Molecular mechanisms of genome size scaling

Zhou, C. Y. (2026) · Journal of Cell Science · doi:10.1242/jcs.264429 · Cited by 1

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Barkova, A., Adhya, I., Conesa, C., Asif-Laidin, A., Bonnet, A., Rabut, E., Chagneau, C., Lesage, P., & Acker, J. (2022) · Mobile DNA · doi:10.1186/s13100-022-00284-0 · Cited by 1

Epigenetics and genotypic variation

Merenciano, M., Larue, A. E. A., Groza, C., Vieira, C. P., Rebollo, R., & Goubert, C. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-19051-3.00006-1 · Cited by 2

Lifespan Extension by Retrotransposons under Conditions of Mild Stress Requires Genes Involved in tRNA Modifications and Nucleotide Metabolism

Maxwell, P. H., Mahmood, M. M., Villanueva, M., Devine, K., & Avery, N. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms251910593 · Cited by 1

Retrotransposons and DNA transposons: insights into evolutionary genomics

Mun, S., & Han, K. (2024) · Genes & Genomics · doi:10.1007/s13258-024-01583-x · Cited by 1

Starship Discovery: A Collaborative Approach to Uncover Massive Transposable Elements

Ament‐Velásquez, S. L., Gluck‐Thaler, E., Urquhart, A. S., McDonald, M. C., & Vogan, A. A. (2024) · The mycota · doi:10.1007/978-3-031-75666-5_1 · Cited by 1

Analysis of nucleotide sequences of bacterial retrointrons for the presence of homology to eukaryotic MGE

Пидпала, О. В., & Лукаш, Л. Л. (2025) · Visnik ukrains kogo tovaristva genetikiv i selekcioneriv · doi:10.7124/visnyk.utgis.22.1-2.1683 · Cited by 1

TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers

Zhang, Y., She, J., Hu, X., Jin, Y., Tao, C., Du, M., & Yang, E. (2026) · Database · doi:10.1093/database/baag025 · Cited by 1

Of Short Interspersed Nuclear Elements, Long Interspersed Nuclear Elements and Leeches: Identification and Molecular Characterization of Transposable Elements in Leech Genomes

Müller, C. R. (2025) · DNA · doi:10.3390/dna5020030 · Cited by 1

Identification of cell-type-specific, transcriptionally active transposable elements using long-read RNA-sequencing data-based comprehensive annotation

Lim, C., An, H., & Park, J. (2025) · Genomics & Informatics · doi:10.1186/s44342-025-00048-1 · Cited by 1

The extraordinary satellitome diversity of freshwater crayfish: a driver of genome evolution

Bonassin, L., Boštjančić, L. L., Rutz, C., Francesconi, C., Schardt, L., Baranski, D., Greve, C., Pârvulescu, L., Besendorfer, V., Mlinarec, J., et al. (2026) · Mobile DNA · doi:10.1186/s13100-026-00399-8 · Cited by 1

RNA triple helix assembled by the poly(A) tail enhances retrotransposon mobilization by preventing RNA deadenylation

Li, H., Wang, L., Lei, Z., Biacsi, A.-S., Jeong, D., & Cho, J. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2510774122 · Cited by 1

Divergent landscapes and evolutionary trajectories of 5S rDNA and Cassandra retroelement in Saccharinae

Liu, J., Lin, J., Li, X., Deng, Z., & Huang, Y. (2025) · BMC Plant Biology · doi:10.1186/s12870-025-07279-y · Cited by 1

A recent and rapid genome expansion driven by the amplification of transposable elements in the Neotropical annual killifish Garcialebias charrua

Gajardo-Escobar, F., Valdivieso, C., Genova, A. D., Pereiro, L., Arezo, M. J., Nardocci, G., Rojas, N., Gutiérrez, V., Papa, N. G., Berois, N., et al. (2025) · Biological Research · doi:10.1186/s40659-025-00649-8 · Cited by 1

Transposable Elements and Genome Evolution in Vertebrates

Fard, V. N., & Tollis, M. (2025) · Epigenetics and human health · doi:10.1007/978-3-032-04125-8_1 · Cited by 1

Cis-regulatory co-option of a transposon family reinforces cell identity across the immune system

Chobirko, J. D., Feschotte, C., & Grimson, A. (2026) · The EMBO Journal · doi:10.64898/2025.12.22.696042 · Cited by 1

Prokaryotic defense systems: Diversity and evolutionary adaptation

Yang, C., Gong, L., Guo, J., & Xiang, H. (2026) · mLife · doi:10.1002/mlf2.70068 · Cited by 1

Genome evolution and regulatory dynamics underlying salt stress tolerance in the halophyte Halogeton arachnoideus

Xu, K., ye, P., (38117), L. Z., Liu, J., Tian, F., & Liu, S. (2026) · Communications Biology · doi:10.1038/s42003-026-09802-9 · Cited by 1

From ancient catalytic folds to retrotransposons and retroviruses

Kyriakou, E., & Magiorkinis, G. (2026) · Trends in Microbiology · doi:10.1016/j.tim.2026.03.003 · Cited by 1

Learning Principle for the Adaptive Shaping of Epigenetic Memory Repertoires

Karin, O. (2026) · PRX Life · doi:10.1103/l3gb-4zfx · Cited by 1

ERGA-CBP chromosome-level genome assembly of the blind scorpion Belisarius xambeui Simon, 1879 (Belisariidae, Scorpiones), a singular scorpion in Europe

Guirao‐Rico, S., Pisarenco, V. A., Escuer, P., Balart‐García, P., Domènech, M., Bellvert, A., Adrián‐Serrano, S., Sánchez-Gracia, A., Arnedo, M. A., & Rozas, J. (2026) · Open Research Europe · doi:10.12688/openreseurope.22872.2 · Cited by 2

Genome reshaping by Helitron transposons in Fusarium oxysporum TR4 affects secondary metabolism but not virulence

Dijkstra, J., Xie, S., van Westerhoven, A. C., Li, Y., Aguilera-Gálvez, C., Nakasato‐Tagami, G., Shi‐Kunne, X., Etalo, D. W., & Kema, G. H. J. (2026) · Nature Communications · doi:10.1038/s41467-026-72669-1 · Cited by 2

Comprehensive profiling of insertion sequences and eukaryotic-like transposons across archaeal genomes

Peng, X.-Y., Gong, Z., & Mao, S.-Q. (2026) · BMC Genomics · doi:10.1186/s12864-026-12948-9 · Cited by 1

Locust cGAS-like Receptors Recognize Derivatives of a Gypsy Retrotransposon to Synergize with RNAi Against Viral Invasion

Li, Y.-L., Li, Y.-L., Zhang, M.-C., Huang, X., Shi, W.-P., Qian, H.-Y., & Cao, C. (2026) · Insects · doi:10.3390/insects17060539 · Cited by 1

Giant transposable elements drive genetic diversification in Aspergillus oryzae, a domesticated fungus traditionally used in food fermentation

Hamanaka, Y., Katayama, T., Chiken, Y., Nishiguchi, K., Yamaguchi, K., Shigenobu, S., & Maruyama, J. (2026) · iScience · doi:10.1016/j.isci.2026.117405 · Cited by 1

Retrotransposon-based mechanisms for transgene addition to the human genome

Collins, K. (2026) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2026.102762 · Cited by 1

Viral mimicry escape as a necessary feature of malignant transformation

Chen, R., He, A., Lindholm, H. T., & Carvalho, D. D. D. (2026) · Nature reviews. Cancer · doi:10.1038/s41568-026-00977-1 · Cited by 1

Comparative analysis of transposable elements in jellyfish and hydroid species (Cnidaria: Medusozoa)

Mays, A., Cabrera, F. P., & Macias-Muñoz, A. (2026) · BMC Genomics · doi:10.1186/s12864-026-13353-y · Cited by 1

To export, or not to export: how nuclear export factor variants resolve Piwi's dilemma

Wang, S., Lu, X., Qiu, D., & Yu, Y. (2021) · Biochemical Society Transactions · doi:10.1042/bst20201171 · Cited by 1

Science and Faith in Dialogue

Eberlin, M. N., GONZÁLEZ, G. A., Keas, M. N., Luskin, C. R., Meyer, S. C., Miller, B., Rana, F. R., Believe, R. T., Ross, H. N., Believe, R. T., et al. (2022) · Reformed theology in Africa series · doi:10.4102/aosis.2022.bk334 · Cited by 2

Mobilome characterization of the beetle Euchroma gigantea (Buprestidae) uncovers multiple long range Tc1-Mariner horizontal transfer events

Amorim, I. C., Mello, C. A. D. A., Félix, A. P., Xavier, C., Wallau, G. L., & de Moura, R. D. C. (2023) · Gene · doi:10.1016/j.gene.2023.147785 · Cited by 1

Impact of Chromosomal Fusion and Transposable Elements on the Genomic Evolution and Genetic Diversity of Ilex Species

Xu, Z., Wei, H., Li, M., Qiu, Y., Li, L., Xu, K., & Guo, Z. (2024) · Plants · doi:10.3390/plants13182649 · Cited by 1

Genomics of Triatominae, the Chagas Disease Vectors

Bacigalupo, A., & Pita, S. (2025) · Springer eBooks · doi:10.1007/978-3-031-70591-5_15 · Cited by 1

Transposon expression and repression in skeletal muscle

Borok, M. J., Zaidan, L. R., & Relaix, F. (2025) · Mobile DNA · doi:10.1186/s13100-025-00352-1 · Cited by 1

Pathway to Independence: a forecast for the future of developmental biology

Ewe, C. K., Farnworth, M. S., Miller, A., Acedo, J. N., Oomen, M. E., Paci, G., Widen, S. A., & Yamada, T. (2025) · Development · doi:10.1242/dev.205224 · Cited by 1

Structural dynamics of chloroplast genome in Paphiopedilum (Orchidaceae): in response to natural hybridization

Wei, X., Hu, A.-Q., Zhou, J., Shu, J., Sun, W.-Y., Li, L., Shao, J., Wang, H., & Yan, Y. (2025) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2025.108521 · Cited by 1

Resistance to genetic control

Knolhoff, L. M., & Overcash, J. M. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-823787-8.00009-x · Cited by 1

Inferring Protein-DNA Binding Profiles at Interspersed Repeats Using HiChIP and PAtChER

Taylor, D., & Branco, M. R. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2883-6_11 · Cited by 1

Experimental Validation of Transposable Element Insertions Using the Polymerase Chain Reaction (PCR)

Merenciano, M., Coronado‐Zamora, M., & González, J. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2883-6_6 · Cited by 1

Retrotransposons and telomeres

Kalmykova, A. I., & Sokolova, O. A. (2023) · Biochemistry (Moscow) · doi:10.31857/s0320972523110076 · Cited by 1

TEPEAK: A novel method for identifying and characterizing polymorphic transposable elements in non-model species populations

Burke, D., Raychaudhuri, J., Chuong, E. B., Taylor, W., & Layer, R. M. (2026) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1013122 · Cited by 1

Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-κB bindingPreprint

Wang, L., Taylor, T., Rathnakumar, K., Khyzha, N., Liang, M., Alizada, A., Campitelli, L., Pour, S. E., Patel, Z. M., Antounians, L., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.10.25.513724 · Cited by 2

Comprehensive identification of potentially functional genes for transposon mobility in the C. elegans genomePreprint

Arata, Y., Jurica, P., Parrish, N. F., & Sako, Y. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.08.552548 · Cited by 1

Comprehensive identification of potentially functional genes for transposon mobility in the C. elegans genomePreprint

Arata, Y., Jurica, P., Parrish, N. F., & Sako, Y. (2023) · Research Square · doi:10.21203/rs.3.rs-3322788/v1 · Cited by 1

Altered defense patterns upon retrotransposition highlights the potential for rapid adaptation by transposable elementsPreprint

Aller, E. S. T., Kanstrup, C., Hunziker, P., Kliebenstein, D. J., & Burow, M. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.12.20.572632 · Cited by 1

Transposable Elements

Bonnet, A., Casier, K., Carré, C., Teysset, L., & Lesage, P. (2023) · Wiley eBooks · doi:10.1002/9781394264902.ch3 · Cited by 1

Transposable Elements and Adaptation

Coronado‐Zamora, M., & González, J. (2024) · Wiley eBooks · doi:10.1002/9781394312467.ch5 · Cited by 1

Transposable Elements in Eukaryotes

Hua‐Van, A. (2024) · Wiley eBooks · doi:10.1002/9781394312467.ch1 · Cited by 1

Lifestyles shape genome size and gene content in fungal pathogensPreprint

Fijarczyk, A., Hessenauer, P., Hamelin, R. C., & Landry, C. R. (2025) · eLife · doi:10.7554/elife.104975.1 · Cited by 1

AGO2 slicing restrains RTL1 to prevent vascular defects and lethal neonatal muscle failurePreprint

Kumar, M., Maria, A. G., Moses, A., Prajapat, M., Clements, J., Kitazawa, M., Shiura, H., Fukuda, K., & Vidigal, J. A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.04.02.646793 · Cited by 2

Centromere divergence and allopolyploidy reshape carnivorous sundew genomesPreprint

Robledillo, L. Á., Fukushima, K., Salojärvi, J., Marques, A., & Albert, V. A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.27.666937 · Cited by 1

SWIF-TE: identifying novel transposable element insertions from short read dataPreprint

Menard, C. C., Catlin, N. S., Platts, A. E., Qiu, Y., Roback, E. Y., Munasinghe, M., Springer, N. M., Josephs, E. B., & Hirsch, C. N. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.30.667279 · Cited by 1

Recent Non-LTR Retrotransposon Activity Predicts Cancer Prevalence in MammalsPreprint

Fard, V. N., & Tollis, M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.08.30.673284 · Cited by 1

Evolutionary remodeling of non-canonical ORF translation in mammalsPreprint

Chang, Y., Lei, T., Zhou, F., Jiang, J., Huang, Y., Zhu, Z., & Zhang, H. (2025) · eLife · doi:10.1101/2025.09.16.676541 · Cited by 1

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Çakır, U., Fritz, M., Butt, U. J., Kawaguchi, R., Geschwind, D. H., Nave, K., Ehrenreich, H., & Singh, M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.13.682070 · Cited by 1

Insertion of an invading retrovirus regulates a novel color trait in swordtail fishPreprint

Haghani, N. B., Dodge, T. O., Baczenas, J. J., Gunn, T. R., He, Q., Pangburn, W., Sood, R., Fascinetto‐Zago, P., Du, K., Kaatmann, A., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.11.07.687308 · Cited by 1

Lifestyles shape genome size and gene content in fungal pathogensPreprint

Fijarczyk, A., Hessenauer, P., Hamelin, R. C., & Landry, C. R. (2025) · eLife · doi:10.7554/elife.104975.3 · Cited by 2

Chronic alcohol exposure drives inflammaging and transposon derepression in hematopoietic stem progenitor cellsPreprint

Yuda, R. A. A., Bea, H., Kellett, V., Kim, J.-W., Yang, F., Choijilsuren, H. B., Park, Y., Fu, Y., Ha, Z., Choi, J., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.25.696246 · Cited by 1

Retrotransposon activation during spermatogenesis achieves massive ecDNA biogenesis but rare integrationPreprint

Tracy, L., Chen, Y., & Zhang, Z. Z. (2026) · Genes & Development · doi:10.1101/gad.353011.125 · Cited by 1

Taming the Genetic Fire: Transposable Element diversity across thermal environments in polychaetesPreprint

Lamothe, L., Hourdez, S., Robert, T., & Bonnivard, É. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.25.703748 · Cited by 1

An atlas of eukaryotic centromere architecture reveals recurrent evolutionary dynamicsPreprint

Włodzimierz, P., Pérez-Román, E., Isa, J. G., Hong, M., Zhang, M., Oliveira, L., Jenike, K. M., Burns, R., Sierra, P., Heuberger, M., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.09.17.752431 · Cited by 1

Candidate vectors of horizontal transfer of BovB retrotransposon

Skobel, O. I., Kosovsky, G. Y., & Глазко, В. И. (2022) · BIO Web of Conferences · doi:10.1051/bioconf/20224301014

Entre restriction des éléments transposables et évolution des génomes

Bonnet, A., & Lesage, P. (2022) · médecine/sciences · doi:10.1051/medsci/2021231

Rumours of war and evidence for peace between science and Christianity

Keas, M. N. (2022) · Reformed theology in Africa series · doi:10.4102/aosis.2022.bk334.10

Engineering principles explain biological systems better than evolutionary theory

Miller, B. (2022) · Reformed theology in Africa series · doi:10.4102/aosis.2022.bk334.07

Molecular and Chromosomal Evolution of DsTc1_5 and DsPogo_8 Elements (Tc1-Mariner) in Species of the Dichotomius Genus (Coleoptera: Scarabaeidae): Contributions to the Speciation Process

Amorim, I. C., Costa, R. G. C., Mota, L., Xavier, C., Wallau, G. L., & de Moura, R. D. C. (2022) · Cytogenetic and Genome Research · doi:10.1159/000527796

Análise da influência de elementos de transposição do clado CR1 na arquitetura do genoma do Schistosonoma mansoni

Martins, E. C. (2022) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.76.2022.tde-16022023-162317

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Santander, M. D. (2022) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.41.2022.tde-11112022-151353

Análise de elementos transponíveis em Hemileia vastatrix e Coffea spp.

da Silva, L. F. (2022) · doi:10.47328/ufvbbt.2022.753

Reviewer #2 (Public Review): Chromatin and gene expression changes during female Drosophila germline stem cell development illuminate the biology of highly potent stem cells

(2023) · eLife · doi:10.7554/elife.90509.1.sa0

Transposable Elements

KIDWELL, M. G. (2005) · Elsevier eBooks · doi:10.1016/b978-012301463-4/50005-x · Cited by 60

Conceptual and Empirical Investigations of Eukaryotic Transposable Element Evolution

Elliott, T. A. (2017) · The Atrium (University of Guelph) · doi:10.13140/rg.2.2.16651.49446 · Cited by 3

The Structural, Functional and Evolutionary Impact of Transposable Elements in Eukaryotes

Almojil, D., Bourgeois, Y., Falis, M., Hariyani, I. E., Wilcox, J. J. S., & Boissinot, S. (2021) · Genes · doi:10.3390/genes12060918 · Cited by 80

The genomes and transposable elements in plants: are they friends or foes?

Kim, N. (2017) · Genes & Genomics · doi:10.1007/s13258-017-0522-y · Cited by 23

Ten things you should know about transposable elements

Bourque, G., Burns, K. H., Gehring, M. A., Gorbunova, V., Seluanov, A., Hammell, M., Imbeault, M., Izsvák, Z., Levin, H. L., Macfarlan, T. S., et al. (2018) · Open Collections · doi:10.14288/1.0374202